VHB436
Library VH
(Link to library)
Clone ID VHB436
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHB436P
(Link to Original site)
Representative DNA sequence
>VHB436 (VHB436Q) /CSM/VH/VHB4-B/VHB436Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTXXXXXXXXXXACGAATGGGA
TAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCT
CGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGC
TTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTT
CAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAGAGGTGGTGGTCAAATCATCC
CAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAAC
CAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTAC
TCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCT
CTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCC
ACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTG
TCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAG
CCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCAC
TTTGAGTTTTCAAAAATAGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIES---

---EWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDEN
MRGIRFNLYDVTLHTDAIQRWWSNHPNCSSCTLCC*inclpnxxrtnxlsrnycprkryw
wyllctqssxrycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrsl
gfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtlsfqk*nqi*kkf*
kk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnp---

---tngikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmk
t*evsvsifmmspstlmpsrgggqiiptarrvlyaaeltasptxlepxylveitapenai
ggiysvlnrrxgivigeerrigsplfsvkahlpvlesfgftadlrshtagqafpqcvfdh
wasigvvnkdkkatevalatrkrkglapeipdldkfhekl*ti*val*vfknrikskknf
kkk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*ir---

---rmg*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**k
herypfqsl*chpph*chpevvvkssqllvvysmlln*lppqlx*nqxt**kllpqktll
vvftlysivvxvlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssii
glqlvlstkirkplksl*pperekv*pqksqiltnstknskqfkshfefskiesnlkkil
kkk

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIES---

---EWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDEN
MRGIRFNLYDVTLHTDAIQRWWSNHPNCSSCTLCC*inclpnxxrtnxlsrnycprkryw
wyllctqssxrycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrsl
gfnwccqqr*esh*srfshqkekrfsprnprs*qiprktlnnlsrtlsfqk*nqi*kkf*
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB436 (VHB436Q) /CSM/VH/VHB4-B/VHB436Q.Seq.d/ 2432 0.0
VHB369 (VHB369Q) /CSM/VH/VHB3-C/VHB369Q.Seq.d/ 1344 0.0
VHB331 (VHB331Q) /CSM/VH/VHB3-B/VHB331Q.Seq.d/ 1344 0.0
VHP408 (VHP408Q) /CSM/VH/VHP4-A/VHP408Q.Seq.d/ 1338 0.0
VHJ661 (VHJ661Q) /CSM/VH/VHJ6-C/VHJ661Q.Seq.d/ 1338 0.0
VHI313 (VHI313Q) /CSM/VH/VHI3-A/VHI313Q.Seq.d/ 1338 0.0
VHE393 (VHE393Q) /CSM/VH/VHE3-D/VHE393Q.Seq.d/ 1338 0.0
VHD770 (VHD770Q) /CSM/VH/VHD7-C/VHD770Q.Seq.d/ 1338 0.0
VHB225 (VHB225Q) /CSM/VH/VHB2-B/VHB225Q.Seq.d/ 1338 0.0
VHA723 (VHA723Q) /CSM/VH/VHA7-A/VHA723Q.Seq.d/ 1338 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EF059386|EF059386.1 Synthetic construct Saccharomyces cerevisiae clone FLH202901.01X EFT2, complete sequence. 54 4e-32 7
AR223730|AR223730.1 Sequence 3 from patent US 6440409. 54 3e-31 7
AR223729|AR223729.1 Sequence 1 from patent US 6440409. 54 4e-31 7
AB023579|AB023579.1 Plasmodium falciparum gene for elongation factor 2, partial cds. 76 8e-20 4
AC009894|AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence. 60 7e-12 4
AB095183|AB095183.1 Cyanidioschyzon merolae gene for elongation factor-2, complete cds. 40 0.013 2
AC009254|AC009254.8 Drosophila melanogaster, chromosome 2L, region 40A-40C, BAC clone BACR42E05, complete sequence. 46 0.059 1
AB190260|AB190260.1 Caenorhabditis elegans gmn-1 mRNA for geminin homolog, complete cds. 32 0.15 2
AC010823|AC010823.4 Homo sapiens clone RP11-4P4, WORKING DRAFT SEQUENCE, 4 unordered pieces. 44 0.23 1
AB026645|AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. 34 0.54 5
dna update 2007. 4. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 158 3e-68
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 249 9e-68
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 257 7e-67
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 245 5e-66
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 252 2e-65
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 251 5e-65
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 250 9e-65
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 249 1e-64
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 249 1e-64
BC077595_1(BC077595|pid:none) Xenopus laevis translation elongat... 229 3e-64
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHB436 is cyt

5' end seq. ID VHB436F
5' end seq.
>VHB436F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTNNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID VHB436Z
3' end seq.
>VHB436Z.Seq
NNNNNNNNNNACGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAA
GGTAACGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATT
AAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAA
AACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAG
AGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGC
CTCCCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTAT
TGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCG
TATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTT
CACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCA
TTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCAC
CAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACT
CTAAACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGAATCAAATCTAAAAAAAATTT
TAAAAAAAAAA
Length of 3' end seq. 731
Connected seq. ID VHB436P
Connected seq.
>VHB436P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGT----------ACGAATGGGA
TAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCT
CGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTCTTTCGTTGGTGC
TTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATGAGAGGTATCCGTTT
CAATCTTTATGATGTCACCCTCCACACTGATGCCATCCAGAGGTGGTGGTCAAATCATCC
CAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCCCCAACTNTNTTAGAAC
CAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGTAC
TCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATCGGTTCCCCATTATTCT
CTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTCCC
ACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGGGCTTCAATTGGTGTTG
TCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAAAGGTTTAG
CCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGCAC
TTTGAGTTTTCAAAAATAGAATCAAATCTAAAAAAAATTTTAAAAAAAAAA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -