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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB431
Library VH
(Link to library)
Clone ID VHB431
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16283-1
Original site URL
Representative seq. ID VHB431P
(Link to Original site)
Representative DNA sequence 
>VHB431 (VHB431Q) /CSM/VH/VHB4-B/VHB431Q.Seq.d/
TGGCCTACTGGTATAGTACCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTA
GAAGATTATCTAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTG
CTGTCCCAGTTAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAA
AAACTTCACAAGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTACAXXXXXXXXXXG
TCGATCCATTAGATTCAACCTCATTGATGATGGATCCAAATATTATTGGTGTTGAACATT
ACAAAGTTGCCNCCGATGTACAAAAGATCCTCCAAGAATATAAATCNCTTCAAGATATTA
TTGCCNTTTTAGGTATGGATGATTTATTTGAAGACCAAAAAGCAACTGTATTCCGTGCTN
GTAANATTCAACGTTTTTTATCNCAACCATTTGAAGTTGCCCACGCCTTCACCAATATGG
AAGGTAGATTNGTTAAACTNTCCGACTNTATCAAAGCCTTCAAAGGTATCCTNGAAGGTA
AATACGATCATNTCCCAGAAGCTGCCTTNTANATGGTTGGTGGTATCGAAGATGTNGAAA
TTAAAGCTGNTAAACTNTTAGAATCCGCTGGTAAAGAAGAAAAGAAAACCNCCNCTACCT
CCNCCNCTGGTCAAGTCAAAGAAGAAACTGTCANAGAAAAAGTTACCAGACTNGTNGATG
AAGCTTNCAATGNTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAANTGNTCNCCTTG
AAGAATTACGTGCTCAATANGAAAAGAACTTTGAATCTGAAATCAGTCNATTAGAAGTTT
TATTAAAAAAATNAATTAACTTCCAAAACTAAAAATAATTATATAATATTCNAATACTAA
NAAAAAAAANAA
sequence update 2002.10.25
Translated Amino Acid sequence 
WPTGIVPDYYIFLKQKCLLLEDYLKTSHKLAKLQLKPQFVLSQLEVSKLLQLTKPQHQHQ
KLHKKKNTLKRIRVFY---

---VDPLDSTSLMMDPNIIGVEHYKVAXDVQKILQEYKSLQDIIAXLGMDDLFEDQKATV
FRAXXIQRFLSQPFEVAHAFTNMEGRXVKLSDXIKAFKGILEGKYDHXPEAAXXMVGGIE
DVEIKAXKLLESAGKEEKKTXXTSXXGQVKEETVXEKVTRLVDEAXNXKVKKLKEYGASX
XXLEELRAQXEKNFESEISXLEVLLKKXINFQN*k*lynixilxkkx
Translated Amino Acid sequence (All Frames) 
Frame A:
WPTGIVPDYYIFLKQKCLLLEDYLKTSHKLAKLQLKPQFVLSQLEVSKLLQLTKPQHQHQ
KLHKKKNTLKRIRVFY---

---VDPLDSTSLMMDPNIIGVEHYKVAXDVQKILQEYKSLQDIIAXLGMDDLFEDQKATV
FRAXXIQRFLSQPFEVAHAFTNMEGRXVKLSDXIKAFKGILEGKYDHXPEAAXXMVGGIE
DVEIKAXKLLESAGKEEKKTXXTSXXGQVKEETVXEKVTRLVDEAXNXKVKKLKEYGASX
XXLEELRAQXEKNFESEISXLEVLLKKXINFQN*k*lynixilxkkx

Frame B:
gllv*yliitsf*nknvcc*kii*khhtn*qncs*nlssccps*rfqnyfs*psrststk
nftrkril*ke*esft---

---sih*iqph**wiqillvlnitklppmykrsskninxfkillpf*vwmiylktkkqly
svlvxfnvfyxnhlklptpspiwkvdxlnxptxskpskvsxkvntixsqklpxxwlvvsk
mxklklxnx*nplvkkkrkpplppplvkskkklsxkklpdxxmklxmxksrn*rnmvpqx
xxlknyvlnxkrtlnlksvx*kfy*knxltsktknnyiifxy*xkkx

Frame C:
aywyst*llhlfktkmfvarrlsknitqisktavktsvravpvrgfkttsvnqaaapapk
tsqekeyfeknksll---

---rsirfnliddgskyywc*tlqscxrctkdppri*ixsryycxfryg*fi*rpksnci
pcx*xstffixti*scprlhqygr*ix*txrlyqslqrypxr*irsxprsclxxgwwyrr
cxn*sx*txrirw*rrkenxxylxxwssqrrncxrksyqtxx*sxqx*sqeikgiwclxx
sp*ritcsixkel*i*nqsirsfikkxn*lpklkiii*ysntxkkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB431 (VHB431Q) /CSM/VH/VHB4-B/VHB431Q.Seq.d/                       1463   0.0
SLH827 (SLH827Q) /CSM/SL/SLH8-B/SLH827Q.Seq.d/                       1025   0.0
SLC880 (SLC880Q) /CSM/SL/SLC8-D/SLC880Q.Seq.d/                       1025   0.0
SLC873 (SLC873Q) /CSM/SL/SLC8-D/SLC873Q.Seq.d/                       1025   0.0
VHK609 (VHK609Q) /CSM/VH/VHK6-A/VHK609Q.Seq.d/                       1019   0.0
VHK519 (VHK519Q) /CSM/VH/VHK5-A/VHK519Q.Seq.d/                       1019   0.0
VHI695 (VHI695Q) /CSM/VH/VHI6-D/VHI695Q.Seq.d/                       1019   0.0
VHE445 (VHE445Q) /CSM/VH/VHE4-B/VHE445Q.Seq.d/                       1019   0.0
VHA544 (VHA544Q) /CSM/VH/VHA5-B/VHA544Q.Seq.d/                       1019   0.0
VFN313 (VFN313Q) /CSM/VF/VFN3-A/VFN313Q.Seq.d/                       1017   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB035129|AB035129.1 Colwellia maris DNA, atp operon genes (atpB, atpE, atpF, atpH, atpA, atpG, atpD, atpC), complete sequence.    42   2e-07  2
AB104883|AB104883.1 Zygosaccharomyces rouxii ZrATP2 gene for mitochondrial ATPase beta-subunit, complete cds.    60   3e-06  1
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50   0.003  1
AB084306|AB084306.1 Pediastrum duplex chloroplast atpB gene for ATP synthase beta-subunit, partial cds.    50   0.003  1
AB014032|AB014032.1 Platydorina caudata chloroplast atpB gene for ATP synthase beta-subunit, strain UTEX 1658, partial cds.    42   0.043  2
AB014002|AB014002.1 Volvox globator chloroplast atpB gene for ATP synthase beta-subunit, strain UTEX 955, partial cds.    42   0.043  2
AC004805|AC004805.1 Homo sapiens Chromosome 17 BAC GS1-531I17 (Genome Systems Human BAC Library) complete sequence.    38   0.30   2
AE006406|AE006406.1 Lactococcus lactis subsp. lactis IL1403 section 168 of 218 of the complete genome.    42   0.33   2
AG044177|AG044177.1 Pan troglodytes DNA, clone: PTB-022L11.F.      42   0.64   1
AC011000|AC011000.3 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence.    42   0.64   1
dna update 2007. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P38482) RecName: Full=ATP synthase subunit beta, mitochondrial;...   166   1e-39
CP000613_2189(CP000613|pid:none) Rhodospirillum centenum SW, com...   162   1e-38
CP001016_215(CP001016|pid:none) Beijerinckia indica subsp. indic...   162   2e-38
(A9H9A8) RecName: Full=ATP synthase subunit beta;          EC=3....   162   2e-38
AK159737_1(AK159737|pid:none) Mus musculus osteoclast-like cell ...   161   2e-38
(P72247) RecName: Full=ATP synthase subunit beta;          EC=3....   161   3e-38
(Q5ZLC5) RecName: Full=ATP synthase subunit beta, mitochondrial;...   160   5e-38
(Q162S9) RecName: Full=ATP synthase subunit beta;          EC=3....   160   5e-38
AK151081_1(AK151081|pid:none) Mus musculus bone marrow macrophag...   160   7e-38
BC037127_1(BC037127|pid:none) Mus musculus ATP synthase, H+ tran...   160   7e-38
protein update 2009. 6.27
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHB431 is cyt
5' end seq. ID VHB431F
5' end seq. 
>VHB431F.Seq
TGGCCTACTGGTATAGTACCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTA
GAAGATTATCTAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTG
CTGTCCCAGTTAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAA
AAACTTCACAAGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTACANNNNNNNNNN
Length of 5' end seq. 239
3' end seq. ID VHB431Z
3' end seq. 
>VHB431Z.Seq
NNNNNNNNNNGTCGATCCATTAGATTCAACCTCATTGATGATGGATCCAAATATTATTGG
TGTTGAACATTACAAAGTTGCCNCCGATGTACAAAAGATCCTCCAAGAATATAAATCNCT
TCAAGATATTATTGCCNTTTTAGGTATGGATGATTTATTTGAAGACCAAAAAGCAACTGT
ATTCCGTGCTNGTAANATTCAACGTTTTTTATCNCAACCATTTGAAGTTGCCCACGCCTT
CACCAATATGGAAGGTAGATTNGTTAAACTNTCCGACTNTATCAAAGCCTTCAAAGGTAT
CCTNGAAGGTAAATACGATCATNTCCCAGAAGCTGCCTTNTANATGGTTGGTGGTATCGA
AGATGTNGAAATTAAAGCTGNTAAACTNTTAGAATCCGCTGGTAAAGAAGAAAAGAAAAC
CNCCNCTACCTCCNCCNCTGGTCAAGTCAAAGAAGAAACTGTCANAGAAAAAGTTACCAG
ACTNGTNGATGAAGCTTNCAATGNTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAAN
TGNTCNCCTTGAAGAATTACGTGCTCAATANGAAAAGAACTTTGAATCTGAAATCAGTCN
ATTAGAAGTTTTATTAAAAAAATNAATTAACTTCCAAAACTAAAAATAATTATATAATAT
TCNAATACTAANAAAAAAAANAA
Length of 3' end seq. 683
Connected seq. ID VHB431P
Connected seq. 
>VHB431P.Seq
TGGCCTACTGGTATAGTACCTGATTATTACATCTTTTTAAAACAAAAATGTTTGTTGCTA
GAAGATTATCTAAAAACATCACACAAATTAGCAAAACTGCAGTTAAAACCTCAGTTCGTG
CTGTCCCAGTTAGAGGTTTCAAAACTACTTCAGTTAACCAAGCCGCAGCACCAGCACCAA
AAACTTCACAAGAAAAAGAATACTTTGAAAAGAATAAGAGTCTTTTACA----------G
TCGATCCATTAGATTCAACCTCATTGATGATGGATCCAAATATTATTGGTGTTGAACATT
ACAAAGTTGCCNCCGATGTACAAAAGATCCTCCAAGAATATAAATCNCTTCAAGATATTA
TTGCCNTTTTAGGTATGGATGATTTATTTGAAGACCAAAAAGCAACTGTATTCCGTGCTN
GTAANATTCAACGTTTTTTATCNCAACCATTTGAAGTTGCCCACGCCTTCACCAATATGG
AAGGTAGATTNGTTAAACTNTCCGACTNTATCAAAGCCTTCAAAGGTATCCTNGAAGGTA
AATACGATCATNTCCCAGAAGCTGCCTTNTANATGGTTGGTGGTATCGAAGATGTNGAAA
TTAAAGCTGNTAAACTNTTAGAATCCGCTGGTAAAGAAGAAAAGAAAACCNCCNCTACCT
CCNCCNCTGGTCAAGTCAAAGAAGAAACTGTCANAGAAAAAGTTACCAGACTNGTNGATG
AAGCTTNCAATGNTAAAGTCAAGAAATTAAAGGAATATGGTGCCTCAANTGNTCNCCTTG
AAGAATTACGTGCTCAATANGAAAAGAACTTTGAATCTGAAATCAGTCNATTAGAAGTTT
TATTAAAAAAATNAATTAACTTCCAAAACTAAAAATAATTATATAATATTCNAATACTAA
NAAAAAAAANAA
Length of connected seq. 902
Full length Seq ID -
Full length Seq. -
Length of full length seq. -