VHB430
Library VH
(Link to library)
Clone ID VHB430
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHB430P
(Link to Original site)
Representative DNA sequence
>VHB430 (VHB430Q) /CSM/VH/VHB4-B/VHB430Q.Seq.d/
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAAXXXXXXXXXXGAATGGGA
TAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCT
NGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTNTTTCGTTGGTGC
TTTCCAATGGGCCACCAAANAAGGTGTTGTTTGTGATGAAAACATGANAGGTATCCGTTT
CAATNTTTATGATGTCACCCTCCACACTGATGCCATCCACANAGGTGGTGGTCAAATCAT
CCCAACTGCTCGTCGTGTACTNTATGCTGNTGAATTAACTGCCTCCCCAACTNTNTTAGA
ACCAATTTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGT
ACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTNGTATCGGTTCCCCATTATT
NTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTC
CCACACTGCCGGTCAAGCTTTCCCACAATGTGTNTTCGATCATTGGGCTTCAATTGGTGT
TGTCAACAAANATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAANAGAAAAGGTTT
AGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGC
NCTTTGAGTTTTCAAAAATAGTAATCAAATCTAAAAAAAATTTTAAAAAAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSPE---

---EWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDXFVGAFQWATKXGVVCDEN
MXGIRFNXYDVTLHTDAIHXGGGQIIPTARRVLYAXELTASPTXLEPIYLVEITAPENAI
GGIYSVLNRRXGIVIGEERXIGSPLXSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDH
WASIGVVNKXKKATEVALATRXRKGLAPEIPDLDKFHEKL*ti*val*vfknsnqi*kkf
*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
nsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllvtlkirnsvmslypqk---

---EWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDXFVGAFQWATKXGVVCDEN
MXGIRFNXYDVTLHTDAIHXGGGQIIPTARRVLYAXELTASPTXLEPIYLVEITAPENAI
GGIYSVLNRRXGIVIGEERXIGSPLXSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDH
WASIGVVNKXKKATEVALATRXRKGLAPEIPDLDKFHEKL*ti*val*vfknsnqi*kkf
*kkk

Frame B:
tleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*h*r*gir*chcipr---

---ngikmmp*tfglsvqkvtvpisxsmspkvfni*mklkixslvlsngppxkvlfvmkt
*xvsvsxfmmspstlmpstxvvvkssqllvvyxmlxn*lppqlx*nqft**kllpqktll
vvftlysivvxvlllvknvvsvphyxlskliyqy*npsvspliyvptlpvklshnvxsii
glqlvlstxirkplksl*ppexekv*pqksqiltnstknskqfksxfefskivikskknf
kkkn

Frame C:
LSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKV
SGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFS
SEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNTE
EAYLSFRRAIESVNVIVGNTEDKEFGDVTVSPE---

---mg*k*chehlvfrsrr*rcqspxqchqrcsife*n*rxfrwcfpmghqxrccl**kh
xrypfqxl*chpph*chpxrwwsnhpncssctxcx*inclpnxxrtnllsrnycprkryw
wyllctqssxrycyw*rtxyrfpiixcqssftsirilrfhr*ftfphcrssfptmcxrsl
gfnwccqqx*esh*srfshqkxkrfsprnprs*qiprktlnnlsrxlsfqk**snlkkil
kkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB430 (VHB430Q) /CSM/VH/VHB4-B/VHB430Q.Seq.d/ 2480 0.0
VHP213 (VHP213Q) /CSM/VH/VHP2-A/VHP213Q.Seq.d/ 1281 0.0
VHO796 (VHO796Q) /CSM/VH/VHO7-D/VHO796Q.Seq.d/ 1281 0.0
VHO652 (VHO652Q) /CSM/VH/VHO6-C/VHO652Q.Seq.d/ 1281 0.0
VHK290 (VHK290Q) /CSM/VH/VHK2-D/VHK290Q.Seq.d/ 1281 0.0
VHB836 (VHB836Q) /CSM/VH/VHB8-B/VHB836Q.Seq.d/ 1281 0.0
VHB592 (VHB592Q) /CSM/VH/VHB5-D/VHB592Q.Seq.d/ 1281 0.0
VHA626 (VHA626Q) /CSM/VH/VHA6-B/VHA626Q.Seq.d/ 1281 0.0
VHN508 (VHN508Q) /CSM/VH/VHN5-A/VHN508Q.Seq.d/ 1279 0.0
VHC716 (VHC716Q) /CSM/VH/VHC7-A/VHC716Q.Seq.d/ 1279 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 1231 0.0 1
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 3e-65 9
Y09664|Y09664.1 C.albicans EFT2 gene. 78 2e-64 9
AF107291|AF107291.1 Candida parapsilosis elongation factor 2 (EFT2) gene, partial cds. 66 8e-64 12
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 62 3e-61 10
AF107290|AF107290.1 Candida lusitaniae elongation factor 2 (EFT2) gene, partial cds. 62 8e-44 8
AY144999|AY144999.1 Saccharomyces kluyveri clone Contig1706 EFT2 gene, complete cds. 78 6e-40 7
AR550596|AR550596.1 Sequence 5727 from patent US 6747137. 66 1e-39 6
AY497659|AY497659.1 Candida dubliniensis strain CBS 7987 translation elongation factor gene, partial cds. 66 3e-39 6
EH015431|EH015431.1 USDA-FP_188032 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt081_G08 5', mRNA sequence. 78 8e-39 4
dna update 2007. 4. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 273 8e-72
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 270 1e-70
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 268 4e-70
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 268 4e-70
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 268 4e-70
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 267 6e-70
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 267 8e-70
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 267 8e-70
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 265 2e-69
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 265 3e-69
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
40.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for VHB430 is nuc

5' end seq. ID VHB430F
5' end seq.
>VHB430F.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAANNNNNNNNNN
Length of 5' end seq. 652
3' end seq. ID VHB430Z
3' end seq.
>VHB430Z.Seq
NNNNNNNNNNGAATGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGG
TAACGGTGCCAATCTCCTNGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAA
AGATTNTTTCGTTGGTGCTTTCCAATGGGCCACCAAANAAGGTGTTGTTTGTGATGAAAA
CATGANAGGTATCCGTTTCAATNTTTATGATGTCACCCTCCACACTGATGCCATCCACAN
AGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTNTATGCTGNTGAATTAACTGC
CTCCCCAACTNTNTTAGAACCAATTTACTTAGTAGAAATTACTGCCCCAGAAAACGCTAT
TGGTGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTNG
TATCGGTTCCCCATTATTNTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTT
CACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTNTTCGATCA
TTGGGCTTCAATTGGTGTTGTCAACAAANATAAGAAAGCCACTGAAGTCGCTTTAGCCAC
CAGAAANAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACT
CTAAACAATTTAAGTCGCNCTTTGAGTTTTCAAAAATAGTAATCAAATCTAAAAAAAATT
TTAAAAAAAAAAATA
Length of 3' end seq. 735
Connected seq. ID VHB430P
Connected seq.
>VHB430P.Seq
AACTCTCGAGTGCAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTC
GTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATC
ACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAG
TTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACCA
TTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCTG
GTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTCA
GTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGCG
TCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATCA
AACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACTG
AAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAACA
CTGAAGATAAGGAATTCGGTGATGTCACTGTATCCCCAGAAA----------GAATGGGA
TAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAACGGTGCCAATCTCCT
NGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGATTNTTTCGTTGGTGC
TTTCCAATGGGCCACCAAANAAGGTGTTGTTTGTGATGAAAACATGANAGGTATCCGTTT
CAATNTTTATGATGTCACCCTCCACACTGATGCCATCCACANAGGTGGTGGTCAAATCAT
CCCAACTGCTCGTCGTGTACTNTATGCTGNTGAATTAACTGCCTCCCCAACTNTNTTAGA
ACCAATTTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTACTCTGT
ACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTNGTATCGGTTCCCCATTATT
NTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACCGCTGATTTACGTTC
CCACACTGCCGGTCAAGCTTTCCCACAATGTGTNTTCGATCATTGGGCTTCAATTGGTGT
TGTCAACAAANATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGAAANAGAAAAGGTTT
AGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAAACAATTTAAGTCGC
NCTTTGAGTTTTCAAAAATAGTAATCAAATCTAAAAAAAATTTTAAAAAAAAAAATA
Length of connected seq. 1367
Full length Seq ID -
Full length Seq. -
Length of full length seq. -