>VHB413 (VHB413Q) /CSM/VH/VHB4-A/VHB413Q.Seq.d/
XXXXXXXXXXTCNTTTGATCGTTGCTGAGGTATTACGTAATATTGAAATCAAGATCACCA
ATGTTCTCTCACCATACGTTAGTGAATTACTTCAAGGTATGCCTGCATCGACTAAATTAC
CAATCTATGATTATGGTACTGAAGGTGGCTATGGTTATTTCCAACTTAAATTGAAAGACA
TTTACATCTATCCAGATTTACGTCCAGAGGTACTTCAAACATTCAGAGAATTGGGTAGCA
GTTTGGTATTTATGAATCTTTTGGATCAAGTTATCACTCAAACCGATAGTTATAACTTTG
CCAAAGCTGCACCTTTCCTTGGTATCACTCCAGAGACTTGGAAAGATTTAGAACCATCCA
CTGAGGATCCAACCCTTCAATCACCATTGTACTCTCAATTACAAAAGTTGGCTCAACTCT
TGGAGAGTAGACCAGAGGTTGCCAAATCTTCACAATCAACTATAAACTATGGTAGTAGTC
GTAGGAATAGAGGTGCATCAATTGAGAATGATGATGATTTTAATGATGGTTATGATGAAG
ATTTATATAAAGATGATAATGATAGATATGAACTTTCATTATTACCAGAAATTGATAGAG
AAAATATATTATCAGAAAGATATGAAAAGAGAAAAGAAGCAAGAGAACTTTGGTTACAAC
AAAAATCAATTAGAGATAGAGAAAAGAAATCTGGTTCACAAGTTGACAATAAATTAAAAT
CACAATCATCAACTAGAGGACGTAGTGAAAAAGNAGGATAGACAAAGAGAAGCATTAAAA
GATTTACAAAANAAAAGAGAGA

---XLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEGGYGYFQLKLKDI
YIYPDLRPEVLQTFRELGSSLVFMNLLDQVITQTDSYNFAKAAPFLGITPETWKDLEPST
EDPTLQSPLYSQLQKLAQLLESRPEVAKSSQSTINYGSSRRNRGASIENDDDFNDGYDED
LYKDDNDRYELSLLPEIDRENILSERYEKRKEARELWLQQKSIRDREKKSGSQVDNKLKS
QSSTRGRSEKXG*tkrsikrftkxkr

Frame A:
---XLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEGGYGYFQLKLKDI
YIYPDLRPEVLQTFRELGSSLVFMNLLDQVITQTDSYNFAKAAPFLGITPETWKDLEPST
EDPTLQSPLYSQLQKLAQLLESRPEVAKSSQSTINYGSSRRNRGASIENDDDFNDGYDED
LYKDDNDRYELSLLPEIDRENILSERYEKRKEARELWLQQKSIRDREKKSGSQVDNKLKS
QSSTRGRSEKXG*tkrsikrftkxkr


Frame B:
---x*sllryyvilksrspmfshhtlvnyfkvclhrlnyqsmimvlkvamvisnln*ktf
tsiqiyvqryfkhsenwvavwyl*ifwiklslkpivitlpklhlslvslqrlgki*nhpl
riqpfnhhctlnykswlnswrvdqrlpnlhnql*tmvvvvgievhqlrmmmilmmvmmki
yikmimidmnfhyyqkliekiyyqkdmkrekkqenfgynknqleiekrnlvhkltin*nh
nhqledvvkkxdrqrealkdlqxkre


Frame C:
---fdrc*git*y*nqdhqcsltir**itsryacid*itnl*lwy*rwlwlfpt*ierhl
hlsrftsrgtsniqrig*qfgiyesfgssyhsnr*l*lcqsctfpwyhsrdlerfrtih*
gsnpsitivlsitkvgstlge*trgcqiftinyklw**s*e*rcin*e***f**wl**rf
i*r****i*tfiitrn**rkyiirki*kekrskrtlvttkin*r*rkeiwfts*q*ikit
iin*rt**kxridkekh*kiykxker

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB413 (VHB413Q) /CSM/VH/VHB4-A/VHB413Q.Seq.d/                       1552   0.0
AHL257 (AHL257Q) /CSM/AH/AHL2-C/AHL257Q.Seq.d/                        874   0.0
AFH509 (AFH509Q) /CSM/AF/AFH5-A/AFH509Q.Seq.d/                        874   0.0
CFG242 (CFG242Q) /CSM/CF/CFG2-B/CFG242Q.Seq.d/                        674   0.0
AFN192 (AFN192Q) /CSM/AF/AFN1-D/AFN192Q.Seq.d/                        648   0.0
VSD381 (VSD381Q) /CSM/VS/VSD3-D/VSD381Q.Seq.d/                        317   1e-85
AFB604 (AFB604Q) /CSM/AF/AFB6-A/AFB604Q.Seq.d/                        262   7e-69
VSG458 (VSG458Q) /CSM/VS/VSG4-C/VSG458Q.Seq.d/                         40   0.051
VFA690 (VFA690Q) /CSM/VF/VFA6-D/VFA690Q.Seq.d/                         40   0.051
VSI248 (VSI248Q) /CSM/VS/VSI2-B/VSI248Q.Seq.d/                         38   0.20

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB028616|AB028616.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MMG15.    34   0.72   3
AG086325|AG086325.1 Pan troglodytes DNA, clone: PTB-084K07.F.      34   1.1    2
AB236336|AB236336.1 Clostridium perfringens F4969 plasmid pCPF4969 DNA, complete sequence.    40   2.2    1
AC150680|AC150680.7 Monodelphis domestica, clone XX-28D5, complete sequence.    40   2.2    1
AC145468|AC145468.1 Pan troglodytes BAC clone RP43-60G12 from chromosome 7, complete sequence.    40   2.2    1
AC142355|AC142355.1 Pan troglodytes BAC clone RP43-22I16 from chromosome 7, complete sequence.    40   2.2    1
AC004740|AC004740.1 Homo sapiens PAC clone RP4-631B17 from 7, complete sequence.    40   2.2    1
AC004552|AC004552.1 Homo sapiens Xp22 BAC GSHB-184P14 (Genome Systems Human BAC library) complete sequence.    40   2.2    1
AC002288|AC002288.1 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-249B10, complete sequence.    40   2.2    1
AR212719|AR212719.1 Sequence 5 from patent US 6403094.             38   8.7    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6UK63) RecName: Full=Protein pirA;  &AY368270_1(AY368270|pid:n...   292   1e-77
AY687629_1(AY687629|pid:none) Aplysia californica cytoplasmic fr...    92   3e-17
(Q5R414) RecName: Full=Cytoplasmic FMR1-interacting protein 2;  ...    76   1e-12
AM393359_1(AM393359|pid:none) Synthetic construct Homo sapiens c...    74   4e-12
BC154082_1(BC154082|pid:none) Xenopus tropicalis cytoplasmic FMR...    74   4e-12
AK147632_1(AK147632|pid:none) Mus musculus adult male brain UNDE...    74   4e-12
AB093288_1(AB093288|pid:none) Mus musculus mRNA for mKIAA1168 pr...    74   4e-12
AM393421_1(AM393421|pid:none) Synthetic construct Homo sapiens c...    74   4e-12
AK303702_1(AK303702|pid:none) Homo sapiens cDNA FLJ55440 complet...    74   4e-12
AK147224_1(AK147224|pid:none) Mus musculus adult male kidney cDN...    74   4e-12

 psg: 0.75  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHB413 is cyt

>VHB413Z.Seq
NNNNNNNNNNTCNTTTGATCGTTGCTGAGGTATTACGTAATATTGAAATCAAGATCACCA
ATGTTCTCTCACCATACGTTAGTGAATTACTTCAAGGTATGCCTGCATCGACTAAATTAC
CAATCTATGATTATGGTACTGAAGGTGGCTATGGTTATTTCCAACTTAAATTGAAAGACA
TTTACATCTATCCAGATTTACGTCCAGAGGTACTTCAAACATTCAGAGAATTGGGTAGCA
GTTTGGTATTTATGAATCTTTTGGATCAAGTTATCACTCAAACCGATAGTTATAACTTTG
CCAAAGCTGCACCTTTCCTTGGTATCACTCCAGAGACTTGGAAAGATTTAGAACCATCCA
CTGAGGATCCAACCCTTCAATCACCATTGTACTCTCAATTACAAAAGTTGGCTCAACTCT
TGGAGAGTAGACCAGAGGTTGCCAAATCTTCACAATCAACTATAAACTATGGTAGTAGTC
GTAGGAATAGAGGTGCATCAATTGAGAATGATGATGATTTTAATGATGGTTATGATGAAG
ATTTATATAAAGATGATAATGATAGATATGAACTTTCATTATTACCAGAAATTGATAGAG
AAAATATATTATCAGAAAGATATGAAAAGAGAAAAGAAGCAAGAGAACTTTGGTTACAAC
AAAAATCAATTAGAGATAGAGAAAAGAAATCTGGTTCACAAGTTGACAATAAATTAAAAT
CACAATCATCAACTAGAGGACGTAGTGAAAAAGNAGGATAGACAAAGAGAAGCATTAAAA
GATTTACAAAANAAAAGAGAGA