VHB407
Library VH
(Link to library)
Clone ID VHB407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16292-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB407 (VHB407Q) /CSM/VH/VHB4-A/VHB407Q.Seq.d/
XXXXXXXXXXGAAGTGATACCTCTTTGAATAACACATTGGATGCATTAGATAAAATCAAA
CAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGT
TATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGA
GGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGT
GAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCAT
TTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATA
CTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGT
TTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAA
ATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATG
ATCGAAGAAATGTCTGATAAATTTAGACGTCCTCGTTCCCAATGGTGGATGGATTTGGTT
GAAACCTCTCAAAATATCTCTGTTTTCCCTTTAGATGACCCTTCCTCTACTAATTTCGAA
GGTTGTAATTCAAATTTATCGGAACAAGATAGT
sequence update 2002. 9.10
Translated Amino Acid sequence
---SDTSLNNTLDALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERG
ITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESIL
GHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMI
EEMSDKFRRPRSQWWMDLVETSQNISVFPLDDPSSTNFEGCNSNLSEQDS


Translated Amino Acid sequence (All Frames)
Frame A:
---k*ylfe*higcir*nqtissgitsfirrgghgcplwlfgcneffnlrc*tfiyngkr
yhieytnqgfgnvc*tfqt*t*nwsny*e*tc*qhllnsfhlftlqrrr*tfircp*iyt
rsfttrwysfcn*sylfnsfnesllsilgkrsqrtwsssnewlywfh*wwyslhsnarnd
rrnv**i*tssfpmvdgfg*nlskylcfpfr*pfly*frrl*fkfigtr*


Frame B:
---SDTSLNNTLDALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERG
ITLNTLTKDLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESIL
GHLQQGGTPSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMI
EEMSDKFRRPRSQWWMDLVETSQNISVFPLDDPSSTNFEGCNSNLSEQDS


Frame C:
---vipl*ithwmh*iksnnqqwhhvvysswrswvpivviwlq*vl*pqvlnvhi*wkev
sh*ih*priwkcllnvsnvnielv*llrvnllatptqlisfihsskkkvniysmsvnlys
viynkvvlllqlivsfqlv**iiiinswktisknmvifk*mvvlvslmvvfitlqckk*s
kkclinldvlvpnggwiwlkplkislfsl*mtlplliskvviqiyrnki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB407 (VHB407Q) /CSM/VH/VHB4-A/VHB407Q.Seq.d/ 1354 0.0
SHA235 (SHA235Q) /CSM/SH/SHA2-B/SHA235Q.Seq.d/ 1352 0.0
AHL557 (AHL557Q) /CSM/AH/AHL5-C/AHL557Q.Seq.d/ 1344 0.0
VHE233 (VHE233Q) /CSM/VH/VHE2-B/VHE233Q.Seq.d/ 1326 0.0
AHH678 (AHH678Q) /CSM/AH/AHH6-D/AHH678Q.Seq.d/ 1324 0.0
AHD787 (AHD787Q) /CSM/AH/AHD7-D/AHD787Q.Seq.d/ 1310 0.0
VHA389 (VHA389Q) /CSM/VH/VHA3-D/VHA389Q.Seq.d/ 1304 0.0
VHJ854 (VHJ854Q) /CSM/VH/VHJ8-C/VHJ854Q.Seq.d/ 1302 0.0
AHM716 (AHM716Q) /CSM/AH/AHM7-A/AHM716Q.Seq.d/ 1292 0.0
VHC779 (VHC779Q) /CSM/VH/VHC7-D/VHC779Q.Seq.d/ 1285 0.0

own update 2004. 8. 1
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X94340|X94340.1 D.discoideum mRNA for 6-phosphofructo-1-kinase. 1350 0.0 1
X89039|X89039.1 D.discoideum mRNA for 6-phosphofructo-1-kinase. 1350 0.0 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1350 0.0 1
DX414156|DX414156.1 SOYC248TH LargeInsertSoybeanGenLibBuild4 Glycine max genomic clone H12A17:Build4MTP4H23, genomic survey sequence. 48 0.33 1
CE635221|CE635221.1 tigr-gss-dog-17000366743799 Dog Library Canis familiaris genomic, genomic survey sequence. 46 1.3 1
BZ298846|BZ298846.1 CG4616.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4616, DNA sequence. 46 1.3 1
BZ297417|BZ297417.1 CG3420.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG3420, DNA sequence. 46 1.3 1
CR380955|CR380955.1 Candida glabrata strain CBS138 chromosome I complete sequence. 46 1.3 1
U97104|U97104.1 Bactrocera tryoni membrane transporter (white) gene, complete cds. 46 1.3 1
AM457870|AM457870.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X115751.5, clone ENTAV 115. 40 1.3 2
dna update 2007. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P90521) RecName: Full=6-phosphofructokinase; Short=Pho... 458 e-128
CP001337_2617(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 187 3e-46
AE017283_2204(AE017283|pid:none) Propionibacterium acnes KPA1712... 161 2e-38
BC081652_1(BC081652|pid:none) Danio rerio phosphofructokinase, m... 160 3e-38
(Q867C9) RecName: Full=6-phosphofructokinase, muscle type; ... 154 2e-36
BC057710_1(BC057710|pid:none) Xenopus laevis hypothetical protei... 153 4e-36
AY335614_1(AY335614|pid:none) Synthetic construct Homo sapiens p... 153 5e-36
CR858939_1(CR858939|pid:none) Pongo abelii mRNA; cDNA DKFZp468O1... 153 5e-36
DQ480147_1(DQ480147|pid:none) Sus scrofa muscle 6-phosphofructok... 153 5e-36
(P08237) RecName: Full=6-phosphofructokinase, muscle type; ... 153 5e-36
protein update 2009. 6.27
PSORT

psg: 0.75 gvh: 0.62 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VHB407 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB407Z
3' end seq.
>VHB407Z.Seq
NNNNNNNNNNGAAGTGATACCTCTTTGAATAACACATTGGATGCATTAGATAAAATCAAA
CAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGT
TATTTGGCTGCAATGAGTTCTTTAACCTCAGGTGCTGAACGTTCATATATAATGGAAAGA
GGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTCAAACGT
GAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCAACTCAT
TTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAATCTATA
CTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCAACTCGT
TTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCATCTTCAA
ATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAAGAAATG
ATCGAAGAAATGTCTGATAAATTTAGACGTCCTCGTTCCCAATGGTGGATGGATTTGGTT
GAAACCTCTCAAAATATCTCTGTTTTCCCTTTAGATGACCCTTCCTCTACTAATTTCGAA
GGTTGTAATTCAAATTTATCGGAACAAGATAGT
Length of 3' end seq. 693
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -