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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB393
Library VH
(Link to library)
Clone ID VHB393
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15722-1
Original site URL
Representative seq. ID VHB393P
(Link to Original site)
Representative DNA sequence 
>VHB393 (VHB393Q) /CSM/VH/VHB3-D/VHB393Q.Seq.d/
CTGTTGGCCTACTGGTAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAAT
TAAATAAGTAAGCAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTT
GTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATA
ATATCAAATTTGATGXXXXXXXXXXATNGTTGGACNCCNAAATGGTACTTGGTGATAATA
ATACTGGTAATTGNACCAGCCCATAATGAACATTTTGGGTAATGGTTGTGAATTTACTCG
ATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTAC
ATGCCATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTC
GACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTT
TGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTG
TGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAAT
TAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAG
TGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATT
AATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTT
TGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAA
AGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATAT
TACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGA
AAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGT
TGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGT
TAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGTTTTTTATTACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vgllvkfqfkknkgkntpklnk*AIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYN
IKFD---

---XWTPKWYLVIIILVIXPAHNEHFG*wl*iysmstrlfdtkwyl***yw*lymp**tf
w*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wy
lym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirl
nqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***
pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg*sfllk
tkikfnh*vfyy
Translated Amino Acid sequence (All Frames) 
Frame A:
llayw*nfnlkkikekthqn*iskq*k*niy*yiytyyyfvy*rsiaksialivvlekii
isnlm---

---xvgxxngtw***yw*lxqpimnilgngceftrcpldcstpngtcdnntgnctchneh
fgnsceftrcpldcstpngtcdnntgnctchnehfgngceftqcplycstpngtcdinsg
ictcdnehigngceikfieckhkcstkhgicdndsgnckcdtqtkgltceesrlliesld
sinskggtiniigyfgnttslltikigesqcknikvfnettlkcdigegkgihnitiidd
dlsftainkfqyldektkiskisrgaiagivvgcvvavsligsiafyyhhknkkvnlff*
klk*nltirffit

Frame B:
cwptgkisi*kk*rkkhtkik*vsnkneifisifthitilfikdq*pkvlhl*wcwrrl*
yqi*---

---xldxxmvlgdnntgnxtsp**tfwvmvvnlldvhsivrhqmvlviiilvivhaimni
lvilvnlldvhsivrhqmvlviiilvivhaimnilvmvvnslnahsivqhqmvlvilivv
fvhvimnilvmvaklnllnvninvqpnmeyvimivvivnvilkqkd*rvknqdy*lnh*t
qsiqkvvq*i*lvileiqhhy*qlklvnhnvkiskysmkqh*nvilvkvkvfiilqslmm
tfrsqqsissnismkkqksqkyrevqllvlllvvlllfh*lvlllfiiitkikrlifssk
n*nki*plgfllq

Frame C:
vgllvkfqfkknkgkntpklnk*AIKMKYLLVYLHILLFCLLKINSQKYCTYSGVGEDYN
IKFD---

---XWTPKWYLVIIILVIXPAHNEHFG*wl*iysmstrlfdtkwyl***yw*lymp**tf
w*fl*iysmstrlfdtkwyl***yw*lymp**tfw*wl*ihsmptllfntkwyl*y**wy
lym***tyw*wlrn*iy*m*t*mfnqtwnm****w*l*m*ysnkrinv*rikiin*iirl
nqfkrwynkynwlfwkyniiinn*nw*itm*kyqsiq*nnikm*yw*r*rys*yynh***
pfvhsnq*vpisr*knknlkniercncwyccwlccccfinwfycfllssqk*kg*sfllk
tkikfnh*vfyy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB393 (VHB393Q) /CSM/VH/VHB3-D/VHB393Q.Seq.d/                       1647   0.0
VHP548 (VHP548Q) /CSM/VH/VHP5-B/VHP548Q.Seq.d/                       1429   0.0
AHH863 (AHH863Q) /CSM/AH/AHH8-C/AHH863Q.Seq.d/                       1405   0.0
VHP522 (VHP522Q) /CSM/VH/VHP5-A/VHP522Q.Seq.d/                       1403   0.0
VHQ484 (VHQ484Q) /CSM/VH/VHQ4-D/VHQ484Q.Seq.d/                       1398   0.0
VHA815 (VHA815Q) /CSM/VH/VHA8-A/VHA815Q.Seq.d/                       1396   0.0
VHP265 (VHP265Q) /CSM/VH/VHP2-C/VHP265Q.Seq.d/                       1394   0.0
VHI141 (VHI141Q) /CSM/VH/VHI1-B/VHI141Q.Seq.d/                       1392   0.0
VHH671 (VHH671Q) /CSM/VH/VHH6-C/VHH671Q.Seq.d/                       1392   0.0
VHA893 (VHA893Q) /CSM/VH/VHA8-D/VHA893Q.Seq.d/                       1390   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB032076|AB032076.1 Dictyostelium discoideum mRNA for lagC2, complete cds.    36   0.045  2
AR224385|AR224385.1 Sequence 2 from patent US 6440720.             46   0.051  1
AR194032|AR194032.1 Sequence 2 from patent US 6348331.             46   0.051  1
AR162109|AR162109.1 Sequence 8 from patent US 6258559.             46   0.051  1
AG070858|AG070858.1 Pan troglodytes DNA, clone: PTB-061O01.R.      46   0.051  1
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.72   4
AC009462|AC009462.7 Drosophila melanogaster clone BACR27G04, complete sequence.    42   0.80   1
AC007650|AC007650.7 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone BACR30G22, complete sequence.    42   0.80   1
AC006933|AC006933.3 Drosophila melanogaster, chromosome 3L, region 73B7-73D6, BAC clone BACR48E21, complete sequence.    32   2.8    6
AC011094|AC011094.3 Homo sapiens clone RP11-1N4, WORKING DRAFT SEQUENCE, 13 unordered pieces.    40   3.2    1
dna update 2007. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...   125   2e-27
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...   108   3e-22
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    97   1e-18
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom...    95   4e-18
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    94   1e-17
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    93   2e-17
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    90   1e-16
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    90   2e-16
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    89   4e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    86   2e-15
protein update 2009. 6.27
PSORT 

 psg: 0.93  gvh: 0.70  alm: 0.38  top: 0.47  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VHB393 is exc
5' end seq. ID VHB393F
5' end seq. 
>VHB393F.Seq
CTGTTGGCCTACTGGTAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAAT
TAAATAAGTAAGCAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTT
GTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATA
ATATCAAATTTGATGNNNNNNNNNN
Length of 5' end seq. 205
3' end seq. ID VHB393Z
3' end seq. 
>VHB393Z.Seq
NNNNNNNNNNATNGTTGGACNCCNAAATGGTACTTGGTGATAATAATACTGGTAATTGNA
CCAGCCCATAATGAACATTTTGGGTAATGGTTGTGAATTTACTCGATGTCCACTCGATTG
TTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACA
TTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTCGACACCAAATGGTAC
TTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTTTGGTAATGGTTGTGA
ATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTGTGATATTAATAGTGG
TATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAATTAAATTTATTGAATG
TAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAGTGGTAATTGTAAATG
TGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATTAATTGAATCATTAGA
CTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTTTGGAAATACAACATC
ATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAAAGTATTCAATGAAAC
AACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATATTACAATCATTGATGA
TGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGAAAAAACAAAAATCTC
AAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGTTGTTGCTGTTTCATT
AATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGTTAATCTTTTCTTCTA
AAAACTAAAATAAAATTTAACCATTAGGTTTTTTATTACAA
Length of 3' end seq. 941
Connected seq. ID VHB393P
Connected seq. 
>VHB393P.Seq
CTGTTGGCCTACTGGTAAAATTTCAATTTAAAAAAAATAAAGGAAAAAACACACCAAAAT
TAAATAAGTAAGCAATAAAAATGAAATATTTATTAGTATATTTACACATATTACTATTTT
GTTTATTAAAGATCAATAGCCAAAAGTATTGCACTTATAGTGGTGTTGGAGAAGATTATA
ATATCAAATTTGATG----------ATNGTTGGACNCCNAAATGGTACTTGGTGATAATA
ATACTGGTAATTGNACCAGCCCATAATGAACATTTTGGGTAATGGTTGTGAATTTACTCG
ATGTCCACTCGATTGTTCGACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTAC
ATGCCATAATGAACATTTTGGTAATTCTTGTGAATTTACTCGATGTCCACTCGATTGTTC
GACACCAAATGGTACTTGTGATAATAATACTGGTAATTGTACATGCCATAATGAACATTT
TGGTAATGGTTGTGAATTCACTCAATGCCCACTCTATTGTTCAACACCAAATGGTACTTG
TGATATTAATAGTGGTATTTGTACATGTGATAATGAACATATTGGTAATGGTTGCGAAAT
TAAATTTATTGAATGTAAACATAAATGTTCAACCAAACATGGAATATGTGATAATGATAG
TGGTAATTGTAAATGTGATACTCAAACAAAAGGATTAACGTGTGAAGAATCAAGATTATT
AATTGAATCATTAGACTCAATCAATTCAAAAGGTGGTACAATAAATATAATTGGTTATTT
TGGAAATACAACATCATTATTAACAATTAAAATTGGTGAATCACAATGTAAAAATATCAA
AGTATTCAATGAAACAACATTAAAATGTGATATTGGTGAAGGTAAAGGTATTCATAATAT
TACAATCATTGATGATGACCTTTCGTTCACAGCAATCAATAAGTTCCAATATCTCGATGA
AAAAACAAAAATCTCAAAAATATCGAGAGGTGCAATTGCTGGTATTGTTGTTGGTTGTGT
TGTTGCTGTTTCATTAATTGGTTCTATTGCTTTTTATTATCATCACAAAAATAAAAAGGT
TAATCTTTTCTTCTAAAAACTAAAATAAAATTTAACCATTAGGTTTTTTATTACAA
Length of connected seq. 1126
Full length Seq ID -
Full length Seq. -
Length of full length seq. -