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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB392
Library VH
(Link to library)
Clone ID VHB392
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID VHB392P
(Link to Original site)
Representative DNA sequence 
>VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/
AATATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAAC
TAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATG
GTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGA
ATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTC
TTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAA
TCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGC
TGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGATTGT
TATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGTTAG
ACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACCAAA
TTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTTAXX
XXXXXXXXCTGGTAAATTCCCACATTTCCCTGCTCACGTTCAGAGAAACAAAATATTATT
GCCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTTA
TCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAAG
AACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGTT
TGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTCA
TTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCAT
TCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAAC
TTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGAT
GAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTT
TCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTT
CAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCA
ATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTA
ATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGNATAAAAA
GAAACTNNAAAANAAGAAAAACAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
IYFNGRSLGDEVNYILNRKTSKKLLPGNSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNE
SEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSSTDGIVNIDLSQLVEA
GSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLVRPLDSSLHYKEEKLITTVEPN
SPFEILNVNSSKYTVYDSL---

---GKFPHFPAHVQRNKILLPMLHHSPLV*f*nhllsiiyhgntlqikvhwnqswniyqr
ticivlisiisiidipirkfgik*lns*rn*nsmnlslghslfiirisft*kitslnkfi
pyq*nqsmhhpfmlihlkitssnswntlhwliqeliklvmkerfliinyqinimnsvvyf
h*n*ihpilnyfl*liiyyfkidlmnqlkl*relvniqfqfqn*fllqplliqnqlihq*
flllplqiyqpllivqkxkkklxxkknk
Translated Amino Acid sequence (All Frames) 
Frame A:
nifqw*iir**s*lhfk*kn**ktitw*fiketksigstmvnw*nyklykhtqtsk*iq*
i*skg*kinek*ts*keksffnksftifrvsftsinftfks*tiin*wysky*slsisrs
wfnnsypcr***fylykrdcyf*siiiiid*sfqry*is*tigfiftl*rreinync*tk
fti*nlkcklfkiysir*f---

---lvnshislltfretkyycqcytihl*csfktiycqsfimgihcksryiginlgifik
eqfvsc*flssls*iyr*eslg*sn*tlkeieil*iyhlvilyss*efrllerlpl*tns
flineinrctihlc*si*k*lhqilgilsig*fknssnw**kkds***iiksil*il*ft
fieiksiry*itffsllfitsr*i**in*nyeenw*tssfnskinfffnhy*fkinsfis
nfffflfkfinhy**fkxikrnxkxrkt

Frame B:
IYFNGRSLGDEVNYILNRKTSKKLLPGNSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNE
SEVKDEKSMRNRQVEKRRVSSTNRSPFLEFLSHPSILLLNLEPSSTDGIVNIDLSQLVEA
GSTIHIHAVDNDSIFTKEIVISDPSSSSSINHFKDTKLVRPLDSSLHYKEEKLITTVEPN
SPFEILNVNSSKYTVYDSL---

---w*iptfpcsrsekqniianvtpftfsvvlkpsivnhlsweyianqgtlesileylsk
nnlyrvdfyhlyhrytdkkvwdkviellkklkfyesitwsfsihhknfvylkdylseqih
slsmksidapsiyvdpfennfikfleysplvnsrthqigderkilnnklsnqyyefcsll
slklnpsdtellslayylllqdrfdesikimkrigkhpvsipklissstttdsksthssv
issssssnlstttdsskx*ketxkxekq

Frame C:
yismvdh*vmklitf*ieklvknyylvih*rnqvywfnhgqlvklqtlqthsnkqvntmn
lk*rmknq*eidklkreeflqqivhhf*sffhihqfyf*ilnhhqlmv**ilisln**kl
vqqfismplimilslqkrllflihhhhhrliiskiln*ldhwihlyiikkrn*lqllnqi
hhlks*m*tlqniqytiv---

---GKFPHFPAHVQRNKILLPMLHHSPLV*f*nhllsiiyhgntlqikvhwnqswniyqr
ticivlisiisiidipirkfgik*lns*rn*nsmnlslghslfiirisft*kitslnkfi
pyq*nqsmhhpfmlihlkitssnswntlhwliqeliklvmkerfliinyqinimnsvvyf
h*n*ihpilnyfl*liiyyfkidlmnqlkl*relvniqfqfqn*fllqplliqnqlihq*
flllplqiyqpllivqkxkkklxxkknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/                       2650   0.0
VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/                       1483   0.0
VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/                       1463   0.0
VHI335 (VHI335Q) /CSM/VH/VHI3-B/VHI335Q.Seq.d/                       1459   0.0
CHG769 (CHG769Q) /CSM/CH/CHG7-C/CHG769Q.Seq.d/                       1459   0.0
VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/                       1417   0.0
VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/                       1302   0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/                       1302   0.0
VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/                       1298   0.0
VHH672 (VHH672Q) /CSM/VH/VHH6-C/VHH672Q.Seq.d/                       1296   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC073434|AC073434.42 Mus musculus strain C57BL/6J chromosome 9 clone rp23-159l13, complete sequence.    40   0.026  3
AE001437|AE001437.1 Clostridium acetobutylicum ATCC 824, complete genome.    40   0.082  18
AC010459|AC010459.5 Homo sapiens chromosome 5 clone CTD-2270K19, WORKING DRAFT SEQUENCE, 12 ordered pieces.    38   0.11   4
AE006388|AE006388.1 Lactococcus lactis subsp. lactis IL1403 section 150 of 218 of the complete genome.    44   0.25   1
AC005314|AC005314.3 Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete sequence.    42   0.33   2
AC087098|AC087098.8 Genomic sequence for Mus musculus, clone RP23-206M19, complete sequence.    36   0.34   3
AC060781|AC060781.8 Mus musculus chromosome 19, clone RP23-196A19, complete sequence.    36   0.37   3
AC026911|AC026911.16 Mus musculus chromosome 1, clone RP23-190F21, complete sequence.    34   0.41   4
AC005315|AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.    38   0.42   3
AC146057|AC146057.2 Pan troglodytes BAC clone RP43-90E18 from chromosome 7, complete sequence.    36   0.47   5
dna update 2007. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1285(CP000685|pid:none) Flavobacterium johnsoniae UW101...    40   0.27
AL844507_40(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.0
AL935258_170(AL935258|pid:none) Lactobacillus plantarum strain W...    37   1.7
CP000551_1069(CP000551|pid:none) Prochlorococcus marinus str. AS...    37   2.2
AL844507_89(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    36   2.9
BC090886_1(BC090886|pid:none) Homo sapiens chromosome 1 open rea...    36   2.9
CP000084_162(CP000084|pid:none) Candidatus Pelagibacter ubique H...    36   3.8
CP000111_1067(CP000111|pid:none) Prochlorococcus marinus str. MI...    36   3.8
AL133320_3(AL133320|pid:none) Human DNA sequence from clone RP4-...    36   3.8
CP000409_33(CP000409|pid:none) Rickettsia canadensis str. McKiel...    35   5.0
protein update 2009. 6.27
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHB392 is cyt
5' end seq. ID VHB392F
5' end seq. 
>VHB392F.Seq
AATATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAAC
TAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATG
GTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGA
ATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTC
TTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAA
TCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGC
TGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGATTGT
TATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGTTAG
ACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACCAAA
TTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTTANN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID VHB392Z
3' end seq. 
>VHB392Z.Seq
NNNNNNNNNNCTGGTAAATTCCCACATTTCCCTGCTCACGTTCAGAGAAACAAAATATTA
TTGCCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATT
TATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAA
AGAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAG
TTTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGT
CATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTC
ATTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATA
ACTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTG
ATGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTAC
TTTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTAC
TTCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTT
CAATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAG
TAATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGNATAAA
AAGAAACTNNAAAANAAGAAAAACAAA
Length of 3' end seq. 807
Connected seq. ID VHB392P
Connected seq. 
>VHB392P.Seq
AATATATTTCAATGGTAGATCATTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAAC
TAGTAAAAAACTATTACCTGGTAATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATG
GTCAATTGGTAAAACTACAAACTCTACAAACACACTCAAACAAGCAAGTAAATACAATGA
ATCTGAAGTAAAGGATGAAAAATCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTC
TTCAACAAATCGTTCACCATTTTTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAA
TCTTGAACCATCATCAACTGATGGTATAGTAAATATTGATCTCTCTCAATTAGTAGAAGC
TGGTTCAACAATTCATATCCATGCCGTTGATAATGATTCTATCTTTACAAAAGAGATTGT
TATTTCTGATCCATCATCATCATCATCGATTAATCATTTCAAAGATACTAAATTAGTTAG
ACCATTGGATTCATCTTTACATTATAAAGAAGAGAAATTAATTACAACTGTTGAACCAAA
TTCACCATTTGAAATCTTAAATGTAAACTCTTCAAAATATACAGTATACGATAGTTTA--
--------CTGGTAAATTCCCACATTTCCCTGCTCACGTTCAGAGAAACAAAATATTATT
GCCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTTA
TCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAAG
AACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGTT
TGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTCA
TTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCAT
TCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAAC
TTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGAT
GAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACTT
TCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACTT
CAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTTTCA
ATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGTA
ATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGNATAAAAA
GAAACTNNAAAANAAGAAAAACAAA
Length of connected seq. 1395
Full length Seq ID -
Full length Seq. -
Length of full length seq. -