VHB377 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB377
Library	VH (Link to library)
Clone ID	VHB377 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15688-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB3-D/VHB377Q.Seq.d/
Representative seq. ID	VHB377P (Link to Original site)
Representative DNA sequence	>VHB377 (VHB377Q) /CSM/VH/VHB3-D/VHB377Q.Seq.d/ TTTTACCATCAACAACACCATCAACTACAATAACTGCATTATCAACCTAGCATTTTATGG AAAATTGTGGAATATATTATTAGTGAATTGAATTATTTAGATAGAATTTTAGATTCGTAT CAAGAGAAAAAAGAAAATACAAAAATATTGGGATCTACCTCCATAAGACTTGAGGAAATA TCTTATTTATTATCTTATATACAATCATCACCAAAAATGCATACAGGAGAATACTCAGAA TTATTAATCGGTATTAATGGACATATGAAAAAGATAACGTTAAAATTAAAGAATAATTTA GAAGAGGATCAATATTCAAATTGTGTAAAATATGGGTGGATTGAGAAAAGATGTGGTAAA AATCAATCATTTAGTTCATGGAAAAGAATGTGGTTTATATTAAAAGATAGTAAACTTACA TATTATATTAAAGAAAAGAATTTAAAGAAAAGATCATCAACAATTGGTAGTACTCAAGAA TTTTTTAAACAACAACATGGAATAGATAATAATAATTGTACAAATAGTAATAGTAATAAT AATAATAATAACTCTGATTTGATTCACTTATCAGCACCTTCATTATCATCATCAACATCA TCAACAATATCACCAATAAGCTCATCATCATCATTAACAACTACAACAACTACTACAACA ACAXXXXXXXXXXAAGTAAAGACAAAGAAAGTGGTCTCCCATTTAATTGGATTATTGGAT CCATCGATCGATGCAAAACTTTTAAATTTAGCTTCAAATCAATCAGAGTTACAAAAAGAA CTCTTATCATTTGAGGAACGTCAAACCACAAGTGGTTTTAAATTTGGTATGGTCTATTGC AGACATGGTCAAGTCACAGACGATGAAATCTTCTCCAATAAACAAGGTAGTCCAGAGTGG GACGAGTTCTTATCATTGATTGGTGACAAGATTGAATTGGTCGGTTGGCCACATTATAGT GCTGGTTTGGATGTTAAATTCAATTCAACAGGTACTCACTCTNTATACACCGATTATCAT GGAAATGAAGTTATGTTCCATGTTTCAACAATGTTACCTTTCTCCACTACCGATTATCAA CAAATTGAAAGAAAACGTCAAGTTGGCAATGATATTTGTGTTGTCATCTTTAATGATGGT ACTCTCTCTTATATGCCAAATACAATCACTTCTCAATTCAATCATGTTATCATTCTTGTT CAATACGATAAACAAAACAATGGTTATAAAGTTTCAATGGCTTGTAAAGATGGTGTTAAA TCACCTTTCGAACCCCTATCTCCAAATAATTTAATTAAAAAATCTGATATTAAAGATTTC ATTTAAANTAAATTAATTAATG
sequence update	2002.10.25
Translated Amino Acid sequence	fyhqqhhqlqLHYQPSILWKIVEYIISELNYLDRILDSYQEKKENTKILGSTSIRLEEI SYLLSYIQSSPKMHTGEYSELLIGINGHMKKITLKLKNNLEEDQYSNCVKYGWIEKRCGK NQSFSSWKRMWFILKDSKLTYYIKEKNLKKRSSTIGSTQEFFKQQHGIDNNNCTNSNSNN NNNNSDLIHLSAPSLSSSTSSTISPISSSSSLTTTTTTTTT--- ---VKTKKVVSHLIGLLDPSIDAKLLNLASNQSELQKELLSFEERQTTSGFKFGMVYCRH GQVTDDEIFSNKQGSPEWDEFLSLIGDKIELVGWPHYSAGLDVKFNSTGTHSXYTDYHGN EVMFHVSTMLPFSTTDYQQIERKRQVGNDICVVIFNDGTLSYMPNTITSQFNHVIILVQY DKQNNGYKVSMACKDGVKSPFEPLSPNNLIKKSDIKDFIxklin
Translated Amino Acid sequence (All Frames)	Frame A: fyhqqhhqlqLHYQPSILWKIVEYIISELNYLDRILDSYQEKKENTKILGSTSIRLEEI SYLLSYIQSSPKMHTGEYSELLIGINGHMKKITLKLKNNLEEDQYSNCVKYGWIEKRCGK NQSFSSWKRMWFILKDSKLTYYIKEKNLKKRSSTIGSTQEFFKQQHGIDNNNCTNSNSNN NNNNSDLIHLSAPSLSSSTSSTISPISSSSSLTTTTTTTTT--- ---krqrkwspildywihrsmqnfilqinqsykknsyhlrnvkpqvvlnlvwsiad mvksqtmksspinkvvqsgtssyhlvtrlnwsvghiivlvwmlnsiqqvltlytpiime mklcsmfqqcylsplpiinklkenvklamifvlsslmmvlslicqiqsllnsimlsflfn tinktmvikfqwlvkmvlnhlsnpylqiilknlilkisfkxnlm Frame B: ftinntinynnciinlafygklwnillvniiiefirikrkkkiqkywdlppdlrky liyyliynhhqkciqentqnysvlmdikrrnriikriniqivnmgglrkdvvk inhlvhgkecglykivnlhiilkkrirkdhqqlvvlknflnnnmeiiiivqivivii iiitliftyqhlhyhhqhhqqyhqahhhhqlqqllqq--- ---skdkesglpfnwiigsidrcktfkfsfksirvtkrtliigtsnhkwfiwygllqt wsshrrnllqtrsrvgrvliidwqdigrlatlcwfgciqfnryslxihrlswk syvpcfnnvtflhyrlstnkktsswqylcchlwysllyakynhfsiqscyhscsi rtkqwlsfnglrwcitfrtpiskfnkiyrfhlxin* Frame C: lpsttpsttitalsthfmencgiyyielfrnfrfvsrekrkyknigiylhktgni lfiilytiitknayrrilriinrywtyekdnvkikefrrgsifklckiwvdekmwk siifmeknvvyikr*tyilyrkefkekiinnwysriftttwnr*lyk** lfdslistfiiiiniinnitnkliiiinnynnyynn--- ---VKTKKVVSHLIGLLDPSIDAKLLNLASNQSELQKELLSFEERQTTSGFKFGMVYCRH GQVTDDEIFSNKQGSPEWDEFLSLIGDKIELVGWPHYSAGLDVKFNSTGTHSXYTDYHGN EVMFHVSTMLPFSTTDYQQIERKRQVGNDICVVIFNDGTLSYMPNTITSQFNHVIILVQY DKQNNGYKVSMACKDGVKSPFEPLSPNNLIKKSDIKDFI*xklin
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB377 (VHB377Q) /CSM/VH/VHB3-D/VHB377Q.Seq.d/ 1219 0.0 AHF117 (AHF117Q) /CSM/AH/AHF1-A/AHF117Q.Seq.d/ 1201 0.0 AHO756 (AHO756Q) /CSM/AH/AHO7-C/AHO756Q.Seq.d/ 1183 0.0 AHH387 (AHH387Q) /CSM/AH/AHH3-D/AHH387Q.Seq.d/ 1183 0.0 SFK590 (SFK590Q) /CSM/SF/SFK5-D/SFK590Q.Seq.d/ 1174 0.0 AHF455 (AHF455Q) /CSM/AH/AHF4-C/AHF455Q.Seq.d/ 1166 0.0 VHD440 (VHD440Q) /CSM/VH/VHD4-B/VHD440Q.Seq.d/ 1160 0.0 AHN716 (AHN716Q) /CSM/AH/AHN7-A/AHN716Q.Seq.d/ 1094 0.0 SFI714 (SFI714Q) /CSM/SF/SFI7-A/SFI714Q.Seq.d/ 971 0.0 AHQ526 (AHQ526Q) /CSM/AH/AHQ5-B/AHQ526Q.Seq.d/ 967 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC048362\|AC048362.14 Mus musculus, clone RP23-105E2, complete sequence. 44 0.24 1 AC147033\|AC147033.2 Pan troglodytes BAC clone RP43-99I5 from chromosome 7, complete sequence. 36 0.91 3 AB050505\|AB050505.1 Dictyostelium discoideum GP138-2 pseudogene. 42 0.95 1 AB050504\|AB050504.1 Dictyostelium discoideum GP138-1 pseudogene. 42 0.95 1 AB050503\|AB050503.1 Dictyostelium discoideum GP138D gene for DdFRP1 alpha, complete cds. 42 0.95 1 AB016609\|AB016609.1 Dictyostelium discoideum gene for gp138, complete cds. 42 0.95 1 AB192950\|AB192950.1 Sciurus lis mitochondrial DNA, D-loop region, complete sequence, haplotype:DH27. 42 0.95 1 AC036145\|AC036145.11 Mus musculus chromosome 5, clone RP23-439C22, complete sequence. 36 1.8 4 AC011149\|AC011149.1 Homo sapiens clone 3_L_16, LOW-PASS SEQUENCE SAMPLING. 40 3.7 1 AC006754\|AC006754.1 Caenorhabditis elegans clone Y40B10, * SEQUENCING IN PROGRESS *, 5 unordered pieces. 40 3.7 1
dna update	2007. 4. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC117072_36(AC117072\|pid:none) Dictyostelium discoideum chromoso... 420 e-116 AC114263_1(AC114263\|pid:none) Dictyostelium discoideum chromosom... 182 2e-44 (Q3V0G7) RecName: Full=GTPase-activating Rap/Ran-GAP domain-like... 175 3e-42 AK034068_1(AK034068\|pid:none) Mus musculus adult male diencephal... 175 3e-42 AL445222_1(AL445222\|pid:none) Human DNA sequence from clone RP11... 174 8e-42 AK294970_1(AK294970\|pid:none) Homo sapiens cDNA FLJ61250 complet... 174 8e-42 AK296246_1(AK296246\|pid:none) Homo sapiens cDNA FLJ59309 complet... 174 8e-42 BX511160_1(BX511160\|pid:none) Zebrafish DNA sequence from clone ... 173 1e-41 (A5PF44) RecName: Full=GTPase-activating Rap/Ran-GAP domain-like... 173 1e-41 FN357469_8(FN357469\|pid:none) Schistosoma mansoni genome sequenc... 160 1e-37
protein update	2009. 6.27
PSORT	psg: 0.71 gvh: 0.50 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for VHB377 is cyt
5' end seq. ID	VHB377F
5' end seq.	>VHB377F.Seq TTTTACCATCAACAACACCATCAACTACAATAACTGCATTATCAACCTAGCATTTTATGG AAAATTGTGGAATATATTATTAGTGAATTGAATTATTTAGATAGAATTTTAGATTCGTAT CAAGAGAAAAAAGAAAATACAAAAATATTGGGATCTACCTCCATAAGACTTGAGGAAATA TCTTATTTATTATCTTATATACAATCATCACCAAAAATGCATACAGGAGAATACTCAGAA TTATTAATCGGTATTAATGGACATATGAAAAAGATAACGTTAAAATTAAAGAATAATTTA GAAGAGGATCAATATTCAAATTGTGTAAAATATGGGTGGATTGAGAAAAGATGTGGTAAA AATCAATCATTTAGTTCATGGAAAAGAATGTGGTTTATATTAAAAGATAGTAAACTTACA TATTATATTAAAGAAAAGAATTTAAAGAAAAGATCATCAACAATTGGTAGTACTCAAGAA TTTTTTAAACAACAACATGGAATAGATAATAATAATTGTACAAATAGTAATAGTAATAAT AATAATAATAACTCTGATTTGATTCACTTATCAGCACCTTCATTATCATCATCAACATCA TCAACAATATCACCAATAAGCTCATCATCATCATTAACAACTACAACAACTACTACAACA ACANNNNNNNNNN
Length of 5' end seq.	673
3' end seq. ID	VHB377Z
3' end seq.	>VHB377Z.Seq NNNNNNNNNNAAGTAAAGACAAAGAAAGTGGTCTCCCATTTAATTGGATTATTGGATCCA TCGATCGATGCAAAACTTTTAAATTTAGCTTCAAATCAATCAGAGTTACAAAAAGAACTC TTATCATTTGAGGAACGTCAAACCACAAGTGGTTTTAAATTTGGTATGGTCTATTGCAGA CATGGTCAAGTCACAGACGATGAAATCTTCTCCAATAAACAAGGTAGTCCAGAGTGGGAC GAGTTCTTATCATTGATTGGTGACAAGATTGAATTGGTCGGTTGGCCACATTATAGTGCT GGTTTGGATGTTAAATTCAATTCAACAGGTACTCACTCTNTATACACCGATTATCATGGA AATGAAGTTATGTTCCATGTTTCAACAATGTTACCTTTCTCCACTACCGATTATCAACAA ATTGAAAGAAAACGTCAAGTTGGCAATGATATTTGTGTTGTCATCTTTAATGATGGTACT CTCTCTTATATGCCAAATACAATCACTTCTCAATTCAATCATGTTATCATTCTTGTTCAA TACGATAAACAAAACAATGGTTATAAAGTTTCAATGGCTTGTAAAGATGGTGTTAAATCA CCTTTCGAACCCCTATCTCCAAATAATTTAATTAAAAAATCTGATATTAAAGATTTCATT TAAANTAAATTAATTAATG
Length of 3' end seq.	679
Connected seq. ID	VHB377P
Connected seq.	>VHB377P.Seq TTTTACCATCAACAACACCATCAACTACAATAACTGCATTATCAACCTAGCATTTTATGG AAAATTGTGGAATATATTATTAGTGAATTGAATTATTTAGATAGAATTTTAGATTCGTAT CAAGAGAAAAAAGAAAATACAAAAATATTGGGATCTACCTCCATAAGACTTGAGGAAATA TCTTATTTATTATCTTATATACAATCATCACCAAAAATGCATACAGGAGAATACTCAGAA TTATTAATCGGTATTAATGGACATATGAAAAAGATAACGTTAAAATTAAAGAATAATTTA GAAGAGGATCAATATTCAAATTGTGTAAAATATGGGTGGATTGAGAAAAGATGTGGTAAA AATCAATCATTTAGTTCATGGAAAAGAATGTGGTTTATATTAAAAGATAGTAAACTTACA TATTATATTAAAGAAAAGAATTTAAAGAAAAGATCATCAACAATTGGTAGTACTCAAGAA TTTTTTAAACAACAACATGGAATAGATAATAATAATTGTACAAATAGTAATAGTAATAAT AATAATAATAACTCTGATTTGATTCACTTATCAGCACCTTCATTATCATCATCAACATCA TCAACAATATCACCAATAAGCTCATCATCATCATTAACAACTACAACAACTACTACAACA ACA----------AAGTAAAGACAAAGAAAGTGGTCTCCCATTTAATTGGATTATTGGAT CCATCGATCGATGCAAAACTTTTAAATTTAGCTTCAAATCAATCAGAGTTACAAAAAGAA CTCTTATCATTTGAGGAACGTCAAACCACAAGTGGTTTTAAATTTGGTATGGTCTATTGC AGACATGGTCAAGTCACAGACGATGAAATCTTCTCCAATAAACAAGGTAGTCCAGAGTGG GACGAGTTCTTATCATTGATTGGTGACAAGATTGAATTGGTCGGTTGGCCACATTATAGT GCTGGTTTGGATGTTAAATTCAATTCAACAGGTACTCACTCTNTATACACCGATTATCAT GGAAATGAAGTTATGTTCCATGTTTCAACAATGTTACCTTTCTCCACTACCGATTATCAA CAAATTGAAAGAAAACGTCAAGTTGGCAATGATATTTGTGTTGTCATCTTTAATGATGGT ACTCTCTCTTATATGCCAAATACAATCACTTCTCAATTCAATCATGTTATCATTCTTGTT CAATACGATAAACAAAACAATGGTTATAAAGTTTCAATGGCTTGTAAAGATGGTGTTAAA TCACCTTTCGAACCCCTATCTCCAAATAATTTAATTAAAAAATCTGATATTAAAGATTTC ATTTAAANTAAATTAATTAATG
Length of connected seq.	1332
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas