VHB371
Library VH
(Link to library)
Clone ID VHB371
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID VHB371P
(Link to Original site)
Representative DNA sequence
>VHB371 (VHB371Q) /CSM/VH/VHB3-C/VHB371Q.Seq.d/
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAX
XXXXXXXXXTGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC
GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT
TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG
AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT
GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC
CCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT
GGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATC
GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC
GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG
GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA
AANAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAA
ACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTAA
AAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVG---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIG
GIYSVLNRRXGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVNKDKKATEVALATRXRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*
kk


Translated Amino Acid sequence (All Frames)
Frame A:
NSRVQKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADK
VSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDF
SSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDRFLLELQLNT
EEAYLSFRRAIESVNVIVG---

---WDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENM
RGIRFNLYDVTLHTDAIHRGGGQIIPTARRVLYAAELTASPTXLEPXYLVEITAPENAIG
GIYSVLNRRXGIVIGEERRIGSPLFSVKAHLPVLESFGFTADLRSHTAGQAFPQCVFDHW
ASIGVVNKDKKATEVALATRXRKGLAPEIPDLDKFHEKL*ti*val*vfknrnqi*kkf*
kk

Frame B:
tleckkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpik
flvi*dichvvlmnksvvsplnlhlyhftskcqrktnyqlvvlhtnf*silsipqvtlis
vqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksivsy*nsn*tl
kklislsvellnpsmsllv---

---gikmmp*tfglsvqkvtvpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*
evsvsifmmspstlmpstevvvkssqllvvysmlln*lppqlx*nqxt**kllpqktllv
vftlysivvxvlllvknvvsvphyslskliyqy*npsvspliyvptlpvklshnvssiig
lqlvlstkirkplksl*ppexekv*pqksqiltnstknskqfkshfefskigikskknfk
kk

Frame C:
lssakkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*s
fw*yeiyvmsc**trawyhh*ificitslrnakgrqitswlyftrifnqsyrfprsr*fq
frsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrsflirtpikh*
rslslfp*sy*irqchcw*---

---g*k*chehlvfrsrr*rcqsprqchqrcsife*n*rffrwcfpmghqrrccl**khe
rypfqsl*chpph*chpqrwwsnhpncssctlcc*inclpnxxrtnxlsrnycprkryww
yllctqssxrycyw*rtsyrfpiilcqssftsirilrfhr*ftfphcrssfptmclrslg
fnwccqqr*esh*srfshqkxkrfsprnprs*qiprktlnnlsrtlsfqk*esnlkkilk
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB371 (VHB371Q) /CSM/VH/VHB3-C/VHB371Q.Seq.d/ 2458 0.0
VHB458 (VHB458Q) /CSM/VH/VHB4-C/VHB458Q.Seq.d/ 1352 0.0
VHP776 (VHP776Q) /CSM/VH/VHP7-D/VHP776Q.Seq.d/ 1346 0.0
VHO793 (VHO793Q) /CSM/VH/VHO7-D/VHO793Q.Seq.d/ 1346 0.0
VHO565 (VHO565Q) /CSM/VH/VHO5-C/VHO565Q.Seq.d/ 1346 0.0
VHK347 (VHK347Q) /CSM/VH/VHK3-B/VHK347Q.Seq.d/ 1346 0.0
VHB347 (VHB347Q) /CSM/VH/VHB3-B/VHB347Q.Seq.d/ 1346 0.0
VHA658 (VHA658Q) /CSM/VH/VHA6-C/VHA658Q.Seq.d/ 1346 0.0
VHA267 (VHA267Q) /CSM/VH/VHA2-C/VHA267Q.Seq.d/ 1346 0.0
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 1344 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

EF059386|EF059386.1 Synthetic construct Saccharomyces cerevisiae clone FLH202901.01X EFT2, complete sequence. 68 6e-36 7
AR223730|AR223730.1 Sequence 3 from patent US 6440409. 68 3e-35 7
AR223729|AR223729.1 Sequence 1 from patent US 6440409. 68 5e-35 7
AB023579|AB023579.1 Plasmodium falciparum gene for elongation factor 2, partial cds. 76 2e-24 5
AC009894|AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence. 60 9e-18 5
AB026185|AB026185.1 Lithospermum erythrorhizon mRNA for elongation factor 2, partial cds. 42 0.001 2
AC009254|AC009254.8 Drosophila melanogaster, chromosome 2L, region 40A-40C, BAC clone BACR42E05, complete sequence. 46 0.003 2
AB095183|AB095183.1 Cyanidioschyzon merolae gene for elongation factor-2, complete cds. 40 0.014 2
AB026645|AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6. 34 0.060 5
AR245261|AR245261.1 Sequence 620 from patent US 6476212. 40 0.092 2
dna update 2007. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB171046_1(AB171046|pid:none) Macaca fascicularis brain cDNA clo... 424 e-117
AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 277 5e-73
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 276 1e-72
BT071866_1(BT071866|pid:none) Salmo salar clone ssal-rgf-501-088... 275 3e-72
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 275 3e-72
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 275 3e-72
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 274 5e-72
BT072304_1(BT072304|pid:none) Salmo salar clone ssal-rgf-520-280... 274 5e-72
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 272 2e-71
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 272 2e-71
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.38 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: mitochondrial
16.0 %: nuclear
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VHB371 is cyt

5' end seq. ID VHB371F
5' end seq.
>VHB371F.Seq
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAAN
NNNNNNNNN
Length of 5' end seq. 609
3' end seq. ID VHB371Z
3' end seq.
>VHB371Z.Seq
NNNNNNNNNNTGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAA
CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGA
TTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACAT
GAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGG
TGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTC
CCCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGG
TGGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTAT
CGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCAC
CGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTG
GGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAG
AAANAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTA
AACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTA
AAAAAAAAA
Length of 3' end seq. 729
Connected seq. ID VHB371P
Connected seq.
>VHB371P.Seq
AACTCTCGAGTGCAAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATT
CGTGCCATTATGGACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGAT
CACGGTAAAACCACTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAA
GTTTCTGGTGATATGAGATATATGTCATGTCGTGCTGATGAACAAGAGCGTGGTATCACC
ATTAAATCTTCATCTGTATCACTTCACTTCGAAATGCCAAAGGAAGACAAATTACCAGCT
GGTTGTACTTCACACGAATTTTTAATCAATCTTATCGATTCCCCAGGTCACGTTGATTTC
AGTTCAGAAGTAACTGCTGCCCTCCGTGTTACTGATGGTGCTTTAGTCGTTATCGATTGC
GTCGAAGGTGTTTGCGTACAAACCGAAACTGTATTACGTCAAGCCGTCGCTGAACGTATC
AAACCAGTCTTATTCGTCAACAAAGTCGATCGTTTCTTATTAGAACTCCAATTAAACACT
GAAGAAGCTTATCTCTCTTTCCGTAGAGCTATTGAATCCGTCAATGTCATTGTTGGTAA-
---------TGGGATAAAAATGATGCCATGAACATTTGGTCTTTCGGTCCAGAAGGTAAC
GGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATGAAATTAAAGAT
TCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTGATGAAAACATG
AGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCATCCACAGAGGT
GGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAATTAACTGCCTCC
CCAACTNTNTTAGAACCAATNTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGT
GGTATTTACTCTGTACTCAATCGTCGTANAGGTATTGTTATTGGTGAAGAACGTCGTATC
GGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCCTTCGGTTTCACC
GCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTTCGATCATTGG
GCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTTAGCCACCAGA
AANAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGAAAAACTCTAA
ACAATTTAAGTCGCACTTTGAGTTTTCAAAAATAGGAATCAAATCTAAAAAAAATTTTAA
AAAAAAAA
Length of connected seq. 1318
Full length Seq ID -
Full length Seq. -
Length of full length seq. -