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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB360
Library VH
(Link to library)
Clone ID VHB360
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16473-1
Original site URL
Representative seq. ID VHB360P
(Link to Original site)
Representative DNA sequence 
>VHB360 (VHB360Q) /CSM/VH/VHB3-C/VHB360Q.Seq.d/
ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA
TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT
GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA
TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC
TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT
GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC
AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT
GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT
GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA
GTTGATTTAGTTTTAGGTXXXXXXXXXXTAGCTGTACTTGTGACAAATTAAAACCATACT
CTGATAGTGATGTTGGTTTCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCN
TCTTCCAACCAGATTATCCAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAA
TCACTGATGTTACCAAACCAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTG
GTGGAGGTGGTGTTGCTATCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCA
CTTACATCAAAAGTGGTACTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCT
ATCCAGATCTTACTCTTGTTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCT
CAAATACCTGTCCATGCGCCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTC
TTGCTGGTATGATCTCTTTAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCG
GTTTCTTAAATCCATTATTATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATA
TTACCACTGGTGCAAACAACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTA
CCACTGGTTATGATGCTGCCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTTGAACAAT
ACGTTTTAAGTTTAAACTAAATAATATAATATAATAAATATATAAATAAATATATAATCG
ATTTAACATNAATTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
IIQKTFIYIFIKMISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYE
LVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLID
NGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAK
VDLVLG---

---SCTCDKLKPYSDSDVGFKIVGYSYDQDAGTXFQPDYPASSPFITSVGATQITDVTKP
EIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLV
GHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLL
YQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN*
ii*ynkyinkyiidltxil
Translated Amino Acid sequence (All Frames) 
Frame A:
IIQKTFIYIFIKMISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYE
LVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLID
NGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAK
VDLVLG---

---*lyl*qiktil***cwfqdrwlll*srcwyxlptrlssfitihhlcwchsnh*cyqt
rnclfsrnwrhhywwrwccyhssstiips*crchlhqkwysptiifiqchq*ilsrsysc
wscl*nrrskhshlkylsmrlrkc*wylmfitnscwydlfn***inwcw*tnprflksii
ipscqrttkrfq*yyhwckql*qslllsiwlhryhwl*cclrfrfn*l*el*tirfkfkl
nnii**iyk*iynrfnxnf

Frame B:
lskkllfiyl*k*fqrlhyyyyy*allhshqqsvsnvsqllmsllhqlilfkin*pnhmn
*fnskfy*nkei*if*krnsgmfhhqnqktmvnfyqkkkliqllhhhqkmlklllig*lt
mvyqrmk*sftlissklepmlvklqlysklhlltthqavlllrelel*vkhlcqcmf*qk
li*f*---

---SCTCDKLKPYSDSDVGFKIVGYSYDQDAGTXFQPDYPASSPFITSVGATQITDVTKP
EIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLV
GHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLL
YQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN*
ii*ynkyinkyiidltxil

Frame C:
ypknfylyiykndfkdfiiiiiikhcctrisnqcptcpnc*chfctssfcsk*isqii*i
ssiqnfiktkkfryfrreilgcfitkirklw*ifikrrn*fncctitkrc*scc*lvn*q
wfike*ndrsl*fhps*nqcw*sfnfirnficsllikpycs*en*scrssiyanacfsks
*fsfr---

---avlvtn*nhtlivmlvsrslvtlmikmlvpssnqiiqlhhhsspllvplkslmlpnq
klfvqsqlapsllvevvllslklnhhtklmplpltskvvlshhhihtmppidsiqillll
vmlmkspfqtlspqipvhap*kvlmvphvhhqlllv*sl*lmin*lvlvnqpsvs*ihyy
tklpknnqtfsmilplvqttvteltvvnmvtplplvmmlpqv*vqltlrtlnntf*v*tk
*yniini*ini*si*hxf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB360 (VHB360Q) /CSM/VH/VHB3-C/VHB360Q.Seq.d/                       2323   0.0
VHO607 (VHO607Q) /CSM/VH/VHO6-A/VHO607Q.Seq.d/                       1392   0.0
VHB338 (VHB338Q) /CSM/VH/VHB3-B/VHB338Q.Seq.d/                       1392   0.0
VHB114 (VHB114Q) /CSM/VH/VHB1-A/VHB114Q.Seq.d/                       1392   0.0
VHI420 (VHI420Q) /CSM/VH/VHI4-A/VHI420Q.Seq.d/                       1390   0.0
VHH703 (VHH703Q) /CSM/VH/VHH7-A/VHH703Q.Seq.d/                       1386   0.0
VHI757 (VHI757Q) /CSM/VH/VHI7-C/VHI757Q.Seq.d/                       1384   0.0
VHH851 (VHH851Q) /CSM/VH/VHH8-C/VHH851Q.Seq.d/                       1384   0.0
VHC491 (VHC491Q) /CSM/VH/VHC4-D/VHC491Q.Seq.d/                       1384   0.0
VHQ223 (VHQ223Q) /CSM/VH/VHQ2-A/VHQ223Q.Seq.d/                       1376   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U27540|U27540.1 Dictyostelium discoideum vegetative stage specific V4-7 mRNA, partial cds.   668   0.0    3
EG017774|EG017774.1 EST00307_0906 Sporophyte cDNA Library Porphyra haitanensis cDNA 5', mRNA sequence.    46   0.003  3
EC761294|EC761294.1 PSE00003790 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    48   0.007  2
EC762663|EC762663.1 PSE00007726 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    48   0.009  2
EC761285|EC761285.1 PSE00007347 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    48   0.010  2
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    54   0.010  1
EC821698|EC821698.1 SME00001050 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence.    52   0.041  1
EK470801|EK470801.1 1095469452390 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005895508 3', genomic survey sequence.    50   0.16   1
AM442139|AM442139.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X073280.11, clone ENTAV 115.    34   0.39   2
AM429638|AM429638.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X000619.2, clone ENTAV 115.    34   0.42   2
dna update 2007. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U27540_1(U27540|pid:none) Dictyostelium discoideum vegetative st...   392   e-107
AC115599_50(AC115599|pid:none) Dictyostelium discoideum chromoso...   253   8e-66
AM411678_1(AM411678|pid:none) Plasmodiophora brassicae ORF1 for ...   143   1e-32
(Q8MZS4) RecName: Full=Physarolisin;          EC=3.4.21.103; Alt...   140   1e-31
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...   131   6e-29
AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso...   114   1e-23
AB276124_1(AB276124|pid:none) Actinophrys sol mRNA for sedolisin...   110   1e-22
(Q9EQV6) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...   105   4e-21
AM270317_43(AM270317|pid:none) Aspergillus niger contig An14c010...   103   1e-20
AJ011912_1(AJ011912|pid:none) Mus musculus mRNA for putative tri...   103   2e-20
protein update 2009. 6.27
PSORT 

 psg: 0.84  gvh: 0.94  alm: 0.35  top: 0.37  tms: 0.00  mit: 0.45  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic

>> prediction for VHB360 is exc
5' end seq. ID VHB360F
5' end seq. 
>VHB360F.Seq
ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA
TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT
GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA
TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC
TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT
GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC
AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT
GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT
GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA
GTTGATTTAGTTTTAGGTNNNNNNNNNN
Length of 5' end seq. 568
3' end seq. ID VHB360Z
3' end seq. 
>VHB360Z.Seq
NNNNNNNNNNTAGCTGTACTTGTGACAAATTAAAACCATACTCTGATAGTGATGTTGGTT
TCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCNTCTTCCAACCAGATTATC
CAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAATCACTGATGTTACCAAAC
CAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTGGTGGAGGTGGTGTTGCTA
TCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCACTTACATCAAAAGTGGTA
CTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCTATCCAGATCTTACTCTTG
TTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCTCAAATACCTGTCCATGCG
CCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTCTTGCTGGTATGATCTCTT
TAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCGGTTTCTTAAATCCATTAT
TATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATATTACCACTGGTGCAAACA
ACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTACCACTGGTTATGATGCTG
CCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTTGAACAATACGTTTTAAGTTTAAACT
AAATAATATAATATAATAAATATATAAATAAATATATAATCGATTTAACATNAATTTTA
Length of 3' end seq. 779
Connected seq. ID VHB360P
Connected seq. 
>VHB360P.Seq
ATTATCCAAAAAACTTTTATTTATATATTTATAAAAATGATTTCAAAGACTTCATTATTA
TTATTATTATTAAGCATTGTTGCACTCGCATCAGCAATCAGTGTCCAACGTGTCCCAATT
GCTGATGTCACTTCTGCACCAGCTCATTTTGTTCAAAATAAATTAGCCAAATCATATGAA
TTAGTTCAATTCAAAATTTTATTAAAACAAAGAAATTTAGATATTTTAGAAGAGAAATTC
TGGGATGTTTCATCACCAAAATCAGAAAACTATGGTAAATTTTTATCAAAAGAAGAAATT
GATTCAATTGTTGCACCATCACCAAAAGATGTTAAAGTTGTTGTTAATTGGTTAATTGAC
AATGGTTTATCAAAGAATGAAATGATCGTTCACTCTGATTTCATCCAAGTTAGAACCAAT
GTTGGTAAAGCTTCAACTTTATTCGAAACTTCATTTGCTCACTACTCATCAAGCCGTACT
GCTCTTAAGAGAATTAGAGTTGTAGGTCAAGCATCTATGCCAATGCATGTTTTAGCAAAA
GTTGATTTAGTTTTAGGT----------TAGCTGTACTTGTGACAAATTAAAACCATACT
CTGATAGTGATGTTGGTTTCAAGATCGTTGGTTACTCTTATGATCAAGATGCTGGTACCN
TCTTCCAACCAGATTATCCAGCTTCATCACCATTCATCACCTCTGTTGGTGCCACTCAAA
TCACTGATGTTACCAAACCAGAAATTGTTTGTTCAGTCGCAACTGGCGCCATCATTACTG
GTGGAGGTGGTGTTGCTATCACTCAAGCTCAACCATCATACCAAGCTGATGCCGTTGCCA
CTTACATCAAAAGTGGTACTCTCCCACCATCATATTCATACAATGCCACCAATAGATTCT
ATCCAGATCTTACTCTTGTTGGTCATGCTTATGAAATCGCCGTTCCAAACACTCTCACCT
CAAATACCTGTCCATGCGCCTTAGAAAGTGTTGATGGTACCTCATGTTCATCACCAACTC
TTGCTGGTATGATCTCTTTAATTAATGATAAATTAATTGGTGCTGGTAAACCAACCCTCG
GTTTCTTAAATCCATTATTATACCAAGCTGCCAAAGAACAACCAAACGTTTTCAATGATA
TTACCACTGGTGCAAACAACTGTAACAGAGCTTACTGTTGTCAATATGGTTACACCGCTA
CCACTGGTTATGATGCTGCCTCAGGTTTAGGTTCAATTAACTTTAAGAACTTTGAACAAT
ACGTTTTAAGTTTAAACTAAATAATATAATATAATAAATATATAAATAAATATATAATCG
ATTTAACATNAATTTTA
Length of connected seq. 1327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -