VHB351
Library VH
(Link to library)
Clone ID VHB351
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15599-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB351 (VHB351Q) /CSM/VH/VHB3-C/VHB351Q.Seq.d/
XXXXXXXXXXCTCAAAAGTACCATACATGGTATCGATTGGTAATCATGAATACGATTTCA
TTGGTCAACCATTTGCACCATCTTGGTCAAACTATGGTAGTGATAGTGGTGGTGAATGTG
GTGTACCATACAGTAAGCGTTTCCATATGACAGGTGCAGAGGATTCAACTCGTAACCTTT
GGTTCTCCTATGAGAATGGACCAATTCATTTCACTGTAATGTCAGCTGAACATGATTTCC
TTCCAGGTAGTCCACAATTTGAATGGTTAAATAATGATTTAGCATCAGTTGACCGTGAAA
AAACTCCATGGGTAATCTTTAGTGGTCATCGTCCATTATATACCTCTGCATTACCAGAGG
ATTCAATTGGTTCAATCACAGCTCTTCGTGAAGCTATTGAACCATTATTCCAAAAGTATG
ATGTTGATATGGCATTATGGGGTCATGTTCACATCTATGAACGTACTTGTGGTTTCATTG
GTAATTTCACTTGTGCTGATAATGATAATGATGGTACCGTTCATGTTATCATTGGTATGG
CTGGTAATACTTACTCTGTACCTTGGGAAGGCTCTGATATTAGCTCTGGTAATGGTCACG
AAGATGAACCAGAATGGTCAATCTTTAGAAGTATCTCTTATGGTCATGTAAGATTCTATG
CAAATACAACCTCACTTTATTTTGAATTTGTTGGTAATCATAGATCAATTGTTCATGACT
CTTTTGGTTAAATAAATAAATTAAATAAATAAATAATAAAAATATAAATTATATTTTTAA
A
sequence update 2002. 9.10
Translated Amino Acid sequence
---SKVPYMVSIGNHEYDFIGQPFAPSWSNYGSDSGGECGVPYSKRFHMTGAEDSTRNLW
FSYENGPIHFTVMSAEHDFLPGSPQFEWLNNDLASVDREKTPWVIFSGHRPLYTSALPED
SIGSITALREAIEPLFQKYDVDMALWGHVHIYERTCGFIGNFTCADNDNDGTVHVIIGMA
GNTYSVPWEGSDISSGNGHEDEPEWSIFRSISYGHVRFYANTTSLYFEFVGNHRSIVHDS
FG*inklnk*iiki*iifl


Translated Amino Acid sequence (All Frames)
Frame A:
---SKVPYMVSIGNHEYDFIGQPFAPSWSNYGSDSGGECGVPYSKRFHMTGAEDSTRNLW
FSYENGPIHFTVMSAEHDFLPGSPQFEWLNNDLASVDREKTPWVIFSGHRPLYTSALPED
SIGSITALREAIEPLFQKYDVDMALWGHVHIYERTCGFIGNFTCADNDNDGTVHVIIGMA
GNTYSVPWEGSDISSGNGHEDEPEWSIFRSISYGHVRFYANTTSLYFEFVGNHRSIVHDS
FG*inklnk*iiki*iifl


Frame B:
---qkyhtwyrlvimntislvnhlhhlgqtmvvivvvnvvyhtvsvsi*qvqriqlvtfg
spmrmdqfisl*cqlnmisfqvvhnlng*imi*hqltvkklhg*slvvivhyiplhyqri
qlvqsqlfvkllnhysksmmliwhygvmftsmnvlvvslvislvlimimmvpfmlslvwl
viltlylgkalilalvmvtkmnqngqslevslmvm*dsmqiqphfilnllviidqlfmtl
lvk*in*ink**kyklyf*


Frame C:
---kstihgidw*s*irfhwstictilvklw***ww*mwctiq*afpydrcrgfns*plv
ll*ewtnsfhcnvs*t*fpsr*sti*mvk**fsis*p*knsmgnl*wsssiiylcitrgf
nwfnhsss*sy*tiipkv*c*ygimgscshl*tylwfhw*fhlc*****wyrscyhwygw
*yllctlgrl*y*lw*wsrr*trmvnl*kyllwsckilckynltlf*icw*s*incs*lf
wlnk*ik*innkninyifk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB351 (VHB351Q) /CSM/VH/VHB3-C/VHB351Q.Seq.d/ 1423 0.0
AFH636 (AFH636Q) /CSM/AF/AFH6-B/AFH636Q.Seq.d/ 1340 0.0
SFI612 (SFI612Q) /CSM/SF/SFI6-A/SFI612Q.Seq.d/ 1269 0.0
AFN142 (AFN142Q) /CSM/AF/AFN1-B/AFN142Q.Seq.d/ 1223 0.0
VHE835 (VHE835Q) /CSM/VH/VHE8-B/VHE835Q.Seq.d/ 880 0.0
SSM618 (SSM618Q) /CSM/SS/SSM6-A/SSM618Q.Seq.d/ 36 0.77
SHD149 (SHD149Q) /CSM/SH/SHD1-C/SHD149Q.Seq.d/ 36 0.77
VSJ660 (VSJ660Q) /CSM/VS/VSJ6-C/VSJ660Q.Seq.d/ 34 3.1
VSF622 (VSF622Q) /CSM/VS/VSF6-A/VSF622Q.Seq.d/ 34 3.1
VSD661 (VSD661Q) /CSM/VS/VSD6-C/VSD661Q.Seq.d/ 34 3.1

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC006284|AC006284.4 Arabidopsis thaliana chromosome 2 clone T4M8 map CIC11A04, complete sequence. 54 1e-04 1
AC021667|AC021667.21 Mus musculus, clone RP23-304J12, complete sequence. 42 0.54 1
AC004827|AC004827.1 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence. 42 0.54 1
AB017063|AB017063.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7. 40 2.2 1
AC023701|AC023701.4 Drosophila melanogaster X BAC RP98-29B16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 40 2.2 1
AC023686|AC023686.4 Drosophila melanogaster X BAC RP98-30C1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 40 2.2 1
AC008253|AC008253.8 Drosophila melanogaster, chromosome 3R, region 98B1-98B2, BAC clone BACR48A16, complete sequence. 40 2.2 1
AC008217|AC008217.5 Drosophila melanogaster, chromosome 3R, region 98B-98B, BAC clone BACR10J03, complete sequence. 40 2.2 1
AC007818|AC007818.8 Drosophila melanogaster clone BACR02M05, complete sequence. 40 2.2 1
AC127464|AC127464.3 Ornithorhynchus anatinus clone OA_Bb-383O11, complete sequence. 40 2.2 1
dna update 2007. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9LMG7) RecName: Full=Probable inactive purple acid phosphatase... 213 4e-54
AY090895_1(AY090895|pid:none) Arabidopsis thaliana truncated put... 209 8e-53
(Q9ZQ81) RecName: Full=Probable inactive purple acid phosphatase... 209 8e-53
EU975503_1(EU975503|pid:none) Zea mays clone 490987 hydrolase/ p... 196 5e-49
AM458569_4(AM458569|pid:none) Vitis vinifera contig VV78X180401.... 193 4e-48
AK100372_1(AK100372|pid:none) Oryza sativa Japonica Group cDNA c... 192 1e-47
EF678036_1(EF678036|pid:none) Picea sitchensis clone WS02821_B10... 173 6e-42
AM466002_2(AM466002|pid:none) Vitis vinifera contig VV78X188747.... 166 6e-40
EU956598_1(EU956598|pid:none) Zea mays clone 1567723 nucleotide ... 160 4e-38
AP003221_7(AP003221|pid:none) Oryza sativa Japonica Group genomi... 158 2e-37
protein update 2009. 6.27
PSORT

psg: 0.88 gvh: 0.36 alm: 0.49 top: 0.30 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VHB351 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHB351Z
3' end seq.
>VHB351Z.Seq
NNNNNNNNNNCTCAAAAGTACCATACATGGTATCGATTGGTAATCATGAATACGATTTCA
TTGGTCAACCATTTGCACCATCTTGGTCAAACTATGGTAGTGATAGTGGTGGTGAATGTG
GTGTACCATACAGTAAGCGTTTCCATATGACAGGTGCAGAGGATTCAACTCGTAACCTTT
GGTTCTCCTATGAGAATGGACCAATTCATTTCACTGTAATGTCAGCTGAACATGATTTCC
TTCCAGGTAGTCCACAATTTGAATGGTTAAATAATGATTTAGCATCAGTTGACCGTGAAA
AAACTCCATGGGTAATCTTTAGTGGTCATCGTCCATTATATACCTCTGCATTACCAGAGG
ATTCAATTGGTTCAATCACAGCTCTTCGTGAAGCTATTGAACCATTATTCCAAAAGTATG
ATGTTGATATGGCATTATGGGGTCATGTTCACATCTATGAACGTACTTGTGGTTTCATTG
GTAATTTCACTTGTGCTGATAATGATAATGATGGTACCGTTCATGTTATCATTGGTATGG
CTGGTAATACTTACTCTGTACCTTGGGAAGGCTCTGATATTAGCTCTGGTAATGGTCACG
AAGATGAACCAGAATGGTCAATCTTTAGAAGTATCTCTTATGGTCATGTAAGATTCTATG
CAAATACAACCTCACTTTATTTTGAATTTGTTGGTAATCATAGATCAATTGTTCATGACT
CTTTTGGTTAAATAAATAAATTAAATAAATAAATAATAAAAATATAAATTATATTTTTAA
A
Length of 3' end seq. 781
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -