VHB349 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB349
Library	VH (Link to library)
Clone ID	VHB349 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15962-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB3-C/VHB349Q.Seq.d/
Representative seq. ID	VHB349P (Link to Original site)
Representative DNA sequence	>VHB349 (VHB349Q) /CSM/VH/VHB3-C/VHB349Q.Seq.d/ AGTTTTAATTATTAATTTCATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGA TCAAATCCCAAAAAGTTTTATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACT CGAAGGTTCAGTTGATTATTGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTC TGAATTATTAATGACTCTCCTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAA TTTCCACAAAGAAGATGCACCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCT CAATGCAGCAAAAGACATGACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTC TCTTCCATATTCATCCTTTAGATATCAAGGACATATGACATCTGATGTTACTATTGCTGG TGTAATTGGTGCCACTGCTACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAG TCCAGTAACCACATTTATTGAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTG GGAATTTCCAGAAAAAATTCCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGA TAAAAATATTATTCCATGCTTCCATTTAACTTGTXXXXXXXXXXTCTATGGTATTCAAGG CTCAAAAGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATC AAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACTT GAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTGA ACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAAT GAAGGGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTGG ACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGAA TACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATAA AAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATCA GTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTCC AGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCTT TGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAGA ATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTTA AATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTTAT
sequence update	2002.10.25
Translated Amino Acid sequence	vliinfiiii*SNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENS ELLMTLLKRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHS LPYSSFRYQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGW EFPEKIPKFNNRHEKKLFEDKNIIPCFHLTC--- ---YGIQGSKAGANAVAAYLSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQF KVVGVPIEPSKETLDNLKSRLYDANGQMKGVDTICQDQQLVVDLAEVGPDQNIVCFGINF KDANGKWNTDYNKYCDVNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQR FGLTTNVPAFGSNKFQLPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNAS KASKPTLilnlikiikniff
Translated Amino Acid sequence (All Frames)	Frame A: sfnyfhnnnlvknefysnpkkfyskvrlkikttrrfsllskglvfrsksrkf iindspqksncsssiknqfpqrrctnfrrflqkrscipqcskrhdqks*sfkflktl ssifilisrtydicyycwcnwchcyyfiqskqcnssskssnhiyngs*scpygwl gisrknskvqtketfrkyysmlpfnl--- ---smvfkaqklvpmqllliaiqlcvhqnlvmvsrdvyvqdsstdyygyvvimin skllvyqlnhlrkpsiisnqdytmpmvkrvliqfvkinnsslilkldqikisfvlvli srmpmvsgilittntvmliiksmkdliikkklvwlnlifsqiplstismvkysnkvlpk dlvslpmfqllvvinsnyqfdqllwmslltkplkvhslmlqchcsnqnalklllhlltl prlqnqlfkfiskkiyfl Frame B: vliinfiiiiSNKMSFIDQIPKSFIPKLDDFRNKLKPLEGSVDYCPKAWFLGPKAENS ELLMTLLKRAIDAHLQSRINFHKEDAPIFEDSYKKDPVYLNAAKDMTKKVDEVLNFLKHS LPYSSFRYQGHMTSDVTIAGVIGATATILYNPNNVTVQASPVTTFIEMAVSNDLARMVGW EFPEKIPKFNNRHEKKLFEDKNIIPCFHLTC--- ---lwysrlkswcqcscclfepfnyayikiwlwydlkemfikyktllleiimvmw**si qscwctntignprsqikiircqwsnegcynlsrsttrrfsswtrskyrlfwyf qgcqwveylqqilcsnlkilkrswygsifnflkyrfqrsvwssiptkscpk iwshyqcssfw*ipitsfkincygclcrnhrfilcynaivqirmrncccicrf qgfktnslnfkfnqnnkkyify Frame C: fllis*fskvikvlliksqkvlfqsmtleinnhskvqliivqrlgfvqkqkil nylsskeqlmlifnqesistkkmhqfskiltkkilytsmqqktpkklmkfisntl fhihpldikdihlmllllvlvplllfytiqtmqfkqvqphllkwqlvmilpvwlvg nfqkkfqslitdmkrnflkikilfhasil--- ---YGIQGSKAGANAVAAYLSHSIMRTSKSGYGMILKRCLLSTRLFYLRLLWLCGDNDQF KVVGVPIEPSKETLDNLKSRLYDANGQMKGVDTICQDQQLVVDLAEVGPDQNIVCFGINF KDANGKWNTDYNKYCDVNNQIYERFDYKKEVGMAQFDLIFSNTAFNDQYGQVFQQSLAQR FGLTTNVPAFGSNKFQLPVLRSTVMDVFANETTKGSFFDVTMPLFKSECAKIVAAFVNAS KASKPTLilnlikiikniff
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB349 (VHB349Q) /CSM/VH/VHB3-C/VHB349Q.Seq.d/ 2668 0.0 VHD271 (VHD271Q) /CSM/VH/VHD2-C/VHD271Q.Seq.d/ 1443 0.0 VHM685 (VHM685Q) /CSM/VH/VHM6-D/VHM685Q.Seq.d/ 1435 0.0 VHL430 (VHL430Q) /CSM/VH/VHL4-B/VHL430Q.Seq.d/ 1431 0.0 VHQ102 (VHQ102Q) /CSM/VH/VHQ1-A/VHQ102Q.Seq.d/ 1423 0.0 VHP496 (VHP496Q) /CSM/VH/VHP4-D/VHP496Q.Seq.d/ 1417 0.0 VHH507 (VHH507Q) /CSM/VH/VHH5-A/VHH507Q.Seq.d/ 1411 0.0 VHP458 (VHP458Q) /CSM/VH/VHP4-C/VHP458Q.Seq.d/ 1384 0.0 VHO479 (VHO479Q) /CSM/VH/VHO4-D/VHO479Q.Seq.d/ 1374 0.0 VHL512 (VHL512Q) /CSM/VH/VHL5-A/VHL512Q.Seq.d/ 1370 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY225986\|AY225986.1 Muntiacus muntjak mitochondrion, complete genome. 48 0.016 1 AF294731\|AF294731.1 Muntiacus muntjak 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product. 48 0.016 1 AC004054\|AC004054.1 Homo sapiens chromosome 4 clone B220G8 map 4q21, complete sequence. 42 0.13 2 AC005713\|AC005713.8 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone BACR48A11, complete sequence. 40 0.80 3 AB231666\|AB231666.1 Ixodes philipi mitochondrial genes for NADH dehydrogenase subunit 2, tRNA-Trp, tRNA-Cys, tRNA-Tyr, cytochrome oxidase subunit 1, complete cds and sequence, strain:O. 42 1.0 1 AB231665\|AB231665.1 Ixodes philipi mitochondrial genes for NADH dehydrogenase subunit 2, tRNA-Trp, tRNA-Cys, tRNA-Tyr, cytochrome oxidase subunit 1, complete cds and sequence, strain:M2. 42 1.0 1 AB231664\|AB231664.1 Ixodes philipi mitochondrial genes for NADH dehydrogenase subunit 2, tRNA-Trp, tRNA-Cys, tRNA-Tyr, cytochrome oxidase subunit 1, complete cds and sequence, strain:M1. 42 1.0 1 AB231663\|AB231663.1 Ixodes philipi mitochondrial genes for NADH dehydrogenase subunit 2, tRNA-Trp, tRNA-Cys, tRNA-Tyr, cytochrome oxidase subunit 1, complete cds and sequence, strain:A. 42 1.0 1 AC008515\|AC008515.5 Homo sapiens chromosome 5 clone CTC-455F7, WORKING DRAFT SEQUENCE, 29 unordered pieces. 34 1.2 3 AC006738\|AC006738.1 Caenorhabditis elegans clone Y37E11a, * SEQUENCING IN PROGRESS *, 4 unordered pieces. 36 2.2 4
dna update	2007. 4. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP000113_3785(CP000113\|pid:none) Myxococcus xanthus DK 1622, com... 122 3e-26 CP001291_2208(CP001291\|pid:none) Cyanothece sp. PCC 7424, comple... 119 2e-25 CP000155_3327(CP000155\|pid:none) Hahella chejuensis KCTC 2396, c... 115 5e-24 CP000559_1042(CP000559\|pid:none) Methanocorpusculum labreanum Z,... 96 4e-18 CP000159_814(CP000159\|pid:none) Salinibacter ruber DSM 13855, co... 85 6e-15 AB086651_1(AB086651\|pid:none) Lactobacillus curvatus tdc gene fo... 84 1e-14 AB059363_2(AB059363\|pid:none) Tetragenococcus halophilus tnp, td... 82 4e-14 BX571866_283(BX571866\|pid:none) Photorhabdus luminescens subsp. ... 81 8e-14 CP000698_939(CP000698\|pid:none) Geobacter uraniireducens Rf4, co... 79 5e-13 AB086652_1(AB086652\|pid:none) Lactobacillus curvatus tdc gene fo... 78 7e-13
protein update	2009. 6.27
PSORT	psg: 0.73 gvh: 0.52 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 60.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: peroxisomal >> prediction for VHB349 is cyt
5' end seq. ID	VHB349F
5' end seq.	>VHB349F.Seq AGTTTTAATTATTAATTTCATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGA TCAAATCCCAAAAAGTTTTATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACT CGAAGGTTCAGTTGATTATTGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTC TGAATTATTAATGACTCTCCTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAA TTTCCACAAAGAAGATGCACCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCT CAATGCAGCAAAAGACATGACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTC TCTTCCATATTCATCCTTTAGATATCAAGGACATATGACATCTGATGTTACTATTGCTGG TGTAATTGGTGCCACTGCTACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAG TCCAGTAACCACATTTATTGAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTG GGAATTTCCAGAAAAAATTCCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGA TAAAAATATTATTCCATGCTTCCATTTAACTTGTNNNNNNNNNN
Length of 5' end seq.	644
3' end seq. ID	VHB349Z
3' end seq.	>VHB349Z.Seq NNNNNNNNNNTCTATGGTATTCAAGGCTCAAAAGCTGGTGCCAATGCAGTTGCTGCTTAT TTGAGCCATTCAATTATGCGTACATCAAAATCTGGTTATGGTATGATCTTAAAGAGATGT TTATTAAGTACAAGACTCTTCTACTTGAGATTATTATGGTTATGTGGTGATAATGATCAA TTCAAAGTTGTTGGTGTACCAATTGAACCATCTAAGGAAACCCTCGATAATCTCAAATCA AGATTATACGATGCCAATGGTCAAATGAAGGGTGTTGATACAATTTGTCAAGATCAACAA CTCGTCGTTGATTTAGCTGAAGTTGGACCAGATCAAAATATCGTTTGTTTTGGTATTAAT TTCAAGGATGCCAATGGTAAGTGGAATACTGATTACAACAAATACTGTGATGTTAATAAT CAAATCTATGAAAGATTTGATTATAAAAAAGAAGTTGGTATGGCTCAATTTGATTTAATT TTCTCAAATACCGCTTTCAACGATCAGTATGGTCAAGTATTCCAACAAAGTCTTGCCCAA AGATTTGGTCTCACTACCAATGTTCCAGCTTTTGGTAGTAATAAATTCCAATTACCAGTT TTAAGATCAACTGTTATGGATGTCTTTGCTAACGAAACCACTAAAGGTTCATTCTTTGAT GTTACAATGCCATTGTTCAAATCAGAATGCGCTAAAATTGTTGCTGCATTTGTTAACGCT TCCAAGGCTTCAAAACCAACTCTTTAAATTTTAAATTTAATCAAAATAATAAAAAATATA TTTTTTAT
Length of 3' end seq.	788
Connected seq. ID	VHB349P
Connected seq.	>VHB349P.Seq AGTTTTAATTATTAATTTCATAATAATAATTTAGTAAAGTAATAAAATGAGTTTTATTGA TCAAATCCCAAAAAGTTTTATTCCAAAGTTAGATGACTTTAGAAATAAATTAAAACCACT CGAAGGTTCAGTTGATTATTGTCCAAAGGCTTGGTTTTTAGGTCCAAAAGCAGAAAATTC TGAATTATTAATGACTCTCCTCAAAAGAGCAATTGATGCTCATCTTCAATCAAGAATCAA TTTCCACAAAGAAGATGCACCAATTTTCGAAGATTCTTACAAAAAAGATCCTGTATACCT CAATGCAGCAAAAGACATGACCAAAAAAGTTGATGAAGTTTTAAATTTCTTAAAACACTC TCTTCCATATTCATCCTTTAGATATCAAGGACATATGACATCTGATGTTACTATTGCTGG TGTAATTGGTGCCACTGCTACTATTTTATACAATCCAAACAATGTAACAGTTCAAGCAAG TCCAGTAACCACATTTATTGAAATGGCAGTTAGTAATGATCTTGCCCGTATGGTTGGTTG GGAATTTCCAGAAAAAATTCCAAAGTTTAATAACAGACATGAAAAGAAACTTTTTGAAGA TAAAAATATTATTCCATGCTTCCATTTAACTTGT----------TCTATGGTATTCAAGG CTCAAAAGCTGGTGCCAATGCAGTTGCTGCTTATTTGAGCCATTCAATTATGCGTACATC AAAATCTGGTTATGGTATGATCTTAAAGAGATGTTTATTAAGTACAAGACTCTTCTACTT GAGATTATTATGGTTATGTGGTGATAATGATCAATTCAAAGTTGTTGGTGTACCAATTGA ACCATCTAAGGAAACCCTCGATAATCTCAAATCAAGATTATACGATGCCAATGGTCAAAT GAAGGGTGTTGATACAATTTGTCAAGATCAACAACTCGTCGTTGATTTAGCTGAAGTTGG ACCAGATCAAAATATCGTTTGTTTTGGTATTAATTTCAAGGATGCCAATGGTAAGTGGAA TACTGATTACAACAAATACTGTGATGTTAATAATCAAATCTATGAAAGATTTGATTATAA AAAAGAAGTTGGTATGGCTCAATTTGATTTAATTTTCTCAAATACCGCTTTCAACGATCA GTATGGTCAAGTATTCCAACAAAGTCTTGCCCAAAGATTTGGTCTCACTACCAATGTTCC AGCTTTTGGTAGTAATAAATTCCAATTACCAGTTTTAAGATCAACTGTTATGGATGTCTT TGCTAACGAAACCACTAAAGGTTCATTCTTTGATGTTACAATGCCATTGTTCAAATCAGA ATGCGCTAAAATTGTTGCTGCATTTGTTAACGCTTCCAAGGCTTCAAAACCAACTCTTTA AATTTTAAATTTAATCAAAATAATAAAAAATATATTTTTTAT
Length of connected seq.	1412
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas