VHB348 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB348
Library	VH (Link to library)
Clone ID	VHB348 (Link to dictyBase)
Atlas ID	-
NBRP ID	G02675
dictyBase ID	DDB0229897
Link to Contig	Contig-U10996-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB3-B/VHB348Q.Seq.d/
Representative seq. ID	VHB348P (Link to Original site)
Representative DNA sequence	>VHB348 (VHB348Q) /CSM/VH/VHB3-B/VHB348Q.Seq.d/ TGGCCTACTGGTAAAAAAAATTCTAATTTTATTAAAACCCTTTTATTTGTTTAATAAACA TAATTTAAATAAACTTCAATAATGTCAGATAATGAACAAGAAGAATCATCACAAGTAGTA TTAAAGGAGGATAAAACCTTTGTTACATTTTTTCAAAGTTTAGTATCCTCTAATGAAGAT ACAGACACAATTAGATTATTTGATAGAAAAGGATATTACTCAATTCATGGTGAAGATGCA GTATTTGTAGCAATGATGCATTTTAAATCAAAGAAATCATTAAAATATTGGAGTATTAGT GATCCAAATCCAAAAAAAGAAAATTAAAATTGATAATGATGGTTCATTAACAACAACTGC ATCATCATCCCAACAACAACAACAAGAATTAGGATTAGCGGTATTAACAATTAGACAAGG TTATGAATTTGAAAATATAGTTAAAGAATTATTAGATGAAAAGAAAAAGATTGAAATTTG GTCAATGAAACCAAATAGTAAACAACAATGGGAACTAATTAAAAAAGGCTCACCAGGTAA TACACAAATGTTTGAAGATGTTTTATTGAATGGTAATTGTGAAGGATCAGTTATGATGGC ATTAAAXXXXXXXXXXAGAAATTCAAGATAATGTTAATTTCATTGCAAATGATATTGATT TAACTCGTGGTCAATCCCAATTTCAAATTATAACAGGACCAAATATGGGTGGTAAATCAA CATTTATTCGTCAAGTTGGATTAATAGTATTAATGGCACAAATTGGTTGTTTTGTACCAG CACAAAAAGCAACAATTGCAGTTGTCGATTGTATTTTATCAAGAGTTGGTGCAGGTGATA GTCAATTACGTGGTGTTTCAACATTTATGGCAGAAATGTTAGAGACATCTTACATTTTAA AGGTTGCAACTAAAAATTCTTTAATCATTATTGATGAACTTGGTAGAGGTACTTCAACAT ATGATGGTTTTGGTTTAGCTTGGGGTATTGCAGAGTATATTTGTAATCAAATTGGTGGTT TCTGTCTATTTGCAACTCATTTCCATGAATTGACAATTCTATCAGATTTACTTCCAATGG TTAAAAATTTACATGTTTCAGCTTCAACCCAAAACAATACTTTTACTTTACTCTATAAAG TTGAACAAGGTCCTTGTGATCAAAGTTTTGGTATTCATGTTGCAATTTTAGCAAATTTCC CTTCACAAGTTATTGAAAATGCAAAACAAAAAGCAAAAGAATTGGAATCTTTTGAATCAA ATACACTTAAACAAAATCATAATAAATTTTTGGAAGAATTTAAAGAAATTAATTTCAATT CAAATGATGTAGAAAAATCATTAAGTTTAGTTAATAGTTTATTAAATAAATATTCAATAG ATATCAATTAATAAAATANAAATTTCTACTAAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	gllvkkilillkpfylfnkhnlnklqcqimnkknhhkyrrikpllhffkvyplmki qtqldyliekditqfmvkmqylqcilnqrnhNIGVLVIQIQKKKIKIDNDGSLTTTA SSSQQQQQELGLAVLTIRQGYEFENIVKELLDEKKKIEIWSMKPNSKQQWELIKKGSPGN TQMFEDVLLNGNCEGSVMMAL--- ---EIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQK ATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDG FGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNTFTLLYKVEQ GPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEFKEINFNSND VEKSLSLVNSLLNKYSIDINnxnfyk
Translated Amino Acid sequence (All Frames)	Frame A: wptgkknsnfiktllfv*tfktsimsdneqeessqvvlkedktfvtffqslvssned tdtirlfdrkgyysihgedavfvammhfkskkslkywsisdpnpkkenn**wfinnnc iiipttttririsginntrlikysriirkekdnlvnetkttmgtnkrltr* ytnvrcfiewlrisydgik--- ---rnsrcfhckyfnswsipisnynrtkygwiniyssswinsingtnwlfctstk snncscrlyfikswcr*sitwcfniygrnvrdilhfkgcnkffnhy*twryfniw fwfslgycrvylsnwwflsicnsfpidnsirftsngkftcfsfnpkqyfyftlst rslskfwysccnfskfpftsykcktkskrigifikyttks*ifgrirnfqfk crkiikfs*fikifnryqlikxkfllk Frame B: gllvkkilillkpfylfnkhnlnklqcqimnkknhhkyrrikpllhffkvyplmki qtqldyliekditqfmvkmqylqcilnqrnhNIGVLVIQIQKKKIKIDNDGSLTTTA SSSQQQQQELGLAVLTIRQGYEFENIVKELLDEKKKIEIWSMKPNSKQQWELIKKGSPGN TQMFEDVLLNGNCEGSVMMAL--- ---EIQDNVNFIANDIDLTRGQSQFQIITGPNMGGKSTFIRQVGLIVLMAQIGCFVPAQK ATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSYILKVATKNSLIIIDELGRGTSTYDG FGLAWGIAEYICNQIGGFCLFATHFHELTILSDLLPMVKNLHVSASTQNNTFTLLYKVEQ GPCDQSFGIHVAILANFPSQVIENAKQKAKELESFESNTLKQNHNKFLEEFKEINFNSND VEKSLSLVNSLLNKYSIDINnxnfyk Frame C: aywkkffynpficliniiinfnnvr*trriitssikggnlcyifskfsil*ry rhnii*krillnswrcsicsndafikeiikileyskskkrklklimmvhqqlh hhpnnnnkndryqldkvmnlkilknymkrkrlkfgqnqivnnngnlkkahqvi hkclkmfymvivkdqlwh--- ---kfkimlislqmililvvnpnfklqdqiwvvnqhlfvkld*ywhklvvlyqhkk qqlqlsivfyqelvqvivnyvvfqhlwqkcrhltfrlqlkilsllmnlvevlqhmmv lvlgvlqsifviklvvsvylqlismnqfyqiyfqwlkiymfqlqpktilllysiklnk vlvikvlvfmlqfqislhkllkmqnkkqknwnllnqihlnkiiinfwknlkklisiqmm knhvlivyiniq*isinkixistk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB348 (VHB348Q) /CSM/VH/VHB3-B/VHB348Q.Seq.d/ 2658 0.0 CHG289 (CHG289Q) /CSM/CH/CHG2-D/CHG289Q.Seq.d/ 1570 0.0 AHL270 (AHL270Q) /CSM/AH/AHL2-C/AHL270Q.Seq.d/ 1550 0.0 CHR180 (CHR180Q) /CSM/CH/CHR1-D/CHR180Q.Seq.d/ 1536 0.0 CHQ653 (CHQ653Q) /CSM/CH/CHQ6-C/CHQ653Q.Seq.d/ 1534 0.0 AHF711 (AHF711Q) /CSM/AH/AHF7-A/AHF711Q.Seq.d/ 1534 0.0 AHF319 (AHF319Q) /CSM/AH/AHF3-A/AHF319Q.Seq.d/ 1534 0.0 AHC623 (AHC623Q) /CSM/AH/AHC6-A/AHC623Q.Seq.d/ 1534 0.0 AHE763 (AHE763Q) /CSM/AH/AHE7-C/AHE763Q.Seq.d/ 1522 0.0 AHD346 (AHD346Q) /CSM/AH/AHD3-B/AHD346Q.Seq.d/ 1522 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 1126 0.0 1 CA302967\|CA302967.1 taa01d08.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:MSH2_HUMAN P43246 DNA MISMATCH REPAIR PROTEIN MSH2. [1] ;, mRNA sequence. 76 9e-25 5 CX054860\|CX054860.1 taj02h05.y2 Hydra EST UCI 5 ALP Hydra magnipapillata cDNA 5' similar to SW:MSH2_MOUSE P43247 DNA MISMATCH REPAIR PROTEIN MSH2. ;, mRNA sequence. 76 4e-21 3 BY949890\|BY949890.1 Physcomitrella patens subsp. patens cDNA clone: PPLS029B01, 5'end. 72 1e-20 4 BH165037\|BH165037.1 ENTTE68TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 64 3e-20 6 CS480546\|CS480546.1 Sequence 1 from Patent WO2006134496. 72 7e-20 4 CS458932\|CS458932.1 Sequence 1 from Patent EP1734125. 72 7e-20 4 BH136983\|BH136983.1 ENTNM86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 64 4e-19 6 BY949900\|BY949900.1 Physcomitrella patens subsp. patens cDNA clone: PPLS029B11, 5'end. 72 8e-18 4 DR914248\|DR914248.1 EST1105787 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1LC44, mRNA sequence. 70 2e-17 3
dna update	2007. 4. 3
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116960_5(AC116960\|pid:none) Dictyostelium discoideum chromosom... 478 e-133 BC161846_1(BC161846\|pid:none) Rattus norvegicus mutS homolog 2 (... 313 7e-84 (P54275) RecName: Full=DNA mismatch repair protein Msh2; AltName... 310 6e-83 AB179432_1(AB179432\|pid:none) Macaca fascicularis testis cDNA cl... 310 1e-82 (Q5XXB5) RecName: Full=DNA mismatch repair protein Msh2; AltName... 310 1e-82 AK222860_1(AK222860\|pid:none) Homo sapiens mRNA for mutS homolog... 308 2e-82 CR861269_1(CR861269\|pid:none) Pongo abelii mRNA; cDNA DKFZp459K0... 308 2e-82 (P43246) RecName: Full=DNA mismatch repair protein Msh2; AltName... 308 2e-82 AK297763_1(AK297763\|pid:none) Homo sapiens cDNA FLJ50998 complet... 308 2e-82 AK296831_1(AK296831\|pid:none) Homo sapiens cDNA FLJ57316 complet... 308 2e-82
protein update	2009. 6.27
PSORT	psg: 0.31 gvh: 0.48 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.12 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 40.0 %: cytoplasmic 8.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: mitochondrial >> prediction for VHB348 is nuc
5' end seq. ID	VHB348F
5' end seq.	>VHB348F.Seq TGGCCTACTGGTAAAAAAAATTCTAATTTTATTAAAACCCTTTTATTTGTTTAATAAACA TAATTTAAATAAACTTCAATAATGTCAGATAATGAACAAGAAGAATCATCACAAGTAGTA TTAAAGGAGGATAAAACCTTTGTTACATTTTTTCAAAGTTTAGTATCCTCTAATGAAGAT ACAGACACAATTAGATTATTTGATAGAAAAGGATATTACTCAATTCATGGTGAAGATGCA GTATTTGTAGCAATGATGCATTTTAAATCAAAGAAATCATTAAAATATTGGAGTATTAGT GATCCAAATCCAAAAAAAGAAAATTAAAATTGATAATGATGGTTCATTAACAACAACTGC ATCATCATCCCAACAACAACAACAAGAATTAGGATTAGCGGTATTAACAATTAGACAAGG TTATGAATTTGAAAATATAGTTAAAGAATTATTAGATGAAAAGAAAAAGATTGAAATTTG GTCAATGAAACCAAATAGTAAACAACAATGGGAACTAATTAAAAAAGGCTCACCAGGTAA TACACAAATGTTTGAAGATGTTTTATTGAATGGTAATTGTGAAGGATCAGTTATGATGGC ATTAAANNNNNNNNNN
Length of 5' end seq.	616
3' end seq. ID	VHB348Z
3' end seq.	>VHB348Z.Seq NNNNNNNNNNAGAAATTCAAGATAATGTTAATTTCATTGCAAATGATATTGATTTAACTC GTGGTCAATCCCAATTTCAAATTATAACAGGACCAAATATGGGTGGTAAATCAACATTTA TTCGTCAAGTTGGATTAATAGTATTAATGGCACAAATTGGTTGTTTTGTACCAGCACAAA AAGCAACAATTGCAGTTGTCGATTGTATTTTATCAAGAGTTGGTGCAGGTGATAGTCAAT TACGTGGTGTTTCAACATTTATGGCAGAAATGTTAGAGACATCTTACATTTTAAAGGTTG CAACTAAAAATTCTTTAATCATTATTGATGAACTTGGTAGAGGTACTTCAACATATGATG GTTTTGGTTTAGCTTGGGGTATTGCAGAGTATATTTGTAATCAAATTGGTGGTTTCTGTC TATTTGCAACTCATTTCCATGAATTGACAATTCTATCAGATTTACTTCCAATGGTTAAAA ATTTACATGTTTCAGCTTCAACCCAAAACAATACTTTTACTTTACTCTATAAAGTTGAAC AAGGTCCTTGTGATCAAAGTTTTGGTATTCATGTTGCAATTTTAGCAAATTTCCCTTCAC AAGTTATTGAAAATGCAAAACAAAAAGCAAAAGAATTGGAATCTTTTGAATCAAATACAC TTAAACAAAATCATAATAAATTTTTGGAAGAATTTAAAGAAATTAATTTCAATTCAAATG ATGTAGAAAAATCATTAAGTTTAGTTAATAGTTTATTAAATAAATATTCAATAGATATCA ATTAATAAAATANAAATTTCTACTAAAAA
Length of 3' end seq.	809
Connected seq. ID	VHB348P
Connected seq.	>VHB348P.Seq TGGCCTACTGGTAAAAAAAATTCTAATTTTATTAAAACCCTTTTATTTGTTTAATAAACA TAATTTAAATAAACTTCAATAATGTCAGATAATGAACAAGAAGAATCATCACAAGTAGTA TTAAAGGAGGATAAAACCTTTGTTACATTTTTTCAAAGTTTAGTATCCTCTAATGAAGAT ACAGACACAATTAGATTATTTGATAGAAAAGGATATTACTCAATTCATGGTGAAGATGCA GTATTTGTAGCAATGATGCATTTTAAATCAAAGAAATCATTAAAATATTGGAGTATTAGT GATCCAAATCCAAAAAAAGAAAATTAAAATTGATAATGATGGTTCATTAACAACAACTGC ATCATCATCCCAACAACAACAACAAGAATTAGGATTAGCGGTATTAACAATTAGACAAGG TTATGAATTTGAAAATATAGTTAAAGAATTATTAGATGAAAAGAAAAAGATTGAAATTTG GTCAATGAAACCAAATAGTAAACAACAATGGGAACTAATTAAAAAAGGCTCACCAGGTAA TACACAAATGTTTGAAGATGTTTTATTGAATGGTAATTGTGAAGGATCAGTTATGATGGC ATTAAA----------AGAAATTCAAGATAATGTTAATTTCATTGCAAATGATATTGATT TAACTCGTGGTCAATCCCAATTTCAAATTATAACAGGACCAAATATGGGTGGTAAATCAA CATTTATTCGTCAAGTTGGATTAATAGTATTAATGGCACAAATTGGTTGTTTTGTACCAG CACAAAAAGCAACAATTGCAGTTGTCGATTGTATTTTATCAAGAGTTGGTGCAGGTGATA GTCAATTACGTGGTGTTTCAACATTTATGGCAGAAATGTTAGAGACATCTTACATTTTAA AGGTTGCAACTAAAAATTCTTTAATCATTATTGATGAACTTGGTAGAGGTACTTCAACAT ATGATGGTTTTGGTTTAGCTTGGGGTATTGCAGAGTATATTTGTAATCAAATTGGTGGTT TCTGTCTATTTGCAACTCATTTCCATGAATTGACAATTCTATCAGATTTACTTCCAATGG TTAAAAATTTACATGTTTCAGCTTCAACCCAAAACAATACTTTTACTTTACTCTATAAAG TTGAACAAGGTCCTTGTGATCAAAGTTTTGGTATTCATGTTGCAATTTTAGCAAATTTCC CTTCACAAGTTATTGAAAATGCAAAACAAAAAGCAAAAGAATTGGAATCTTTTGAATCAA ATACACTTAAACAAAATCATAATAAATTTTTGGAAGAATTTAAAGAAATTAATTTCAATT CAAATGATGTAGAAAAATCATTAAGTTTAGTTAATAGTTTATTAAATAAATATTCAATAG ATATCAATTAATAAAATANAAATTTCTACTAAAAA
Length of connected seq.	1405
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas