>VHB344 (VHB344Q) /CSM/VH/VHB3-B/VHB344Q.Seq.d/
XXXXXXXXXXATTTTTATTATCAGAATATAAGAAATGGTATAAGAAAGAAGGTGTTACAG
GATATATAATTAAAGAGGTTCAAACTTTTTTAGCAACTAGTAATCCAATGTATACTCATA
CTAGATCAATTCCATATATTCTATCGAATGAATTTCATCATCATGCATTCCTTTATAGAT
TTGAACGTATTCGTTCAACTGTAATCGAGAAACTTAGTCATTCAAAATCAAAGAAATTGA
CATTCCTTCAATCTTGGAATGATTCACTACTATACATCATAGATATGGCAAAGGCTTATT
CTCATCTTTACATTTTAGAACAAAGTCATCTAGCAATTAGAAGATGTCAAGATCCTTCAA
CAAGACATTTACTCAATGATTTGATTAAACTATATGCTCTATCAAATATTGAACAAGATT
TTGCTTTCTTTAGAAATTGTAATTTCTTATCCTCTGGTAAAGCATTTGCAATATCTGATG
CAATCAAAGAACTATGTATTGGTATTAAACCTTATGCACTTCAAATCATTAATTCTGATT
ATAACATTTTAATTGATCCACTCTTAAATATTCCTTTAGCAAATTTGGATGGTGATTATA
TTAATCATATGGCTGATTGTGTTGGTGTTCCAAAATCAAATTTATAAATAATTAAATAT

---FLLSEYKKWYKKEGVTGYIIKEVQTFLATSNPMYTHTRSIPYILSNEFHHHAFLYRF
ERIRSTVIEKLSHSKSKKLTFLQSWNDSLLYIIDMAKAYSHLYILEQSHLAIRRCQDPST
RHLLNDLIKLYALSNIEQDFAFFRNCNFLSSGKAFAISDAIKELCIGIKPYALQIINSDY
NILIDPLLNIPLANLDGDYINHMADCVGVPKSNL*iiky

Frame A:
---FLLSEYKKWYKKEGVTGYIIKEVQTFLATSNPMYTHTRSIPYILSNEFHHHAFLYRF
ERIRSTVIEKLSHSKSKKLTFLQSWNDSLLYIIDMAKAYSHLYILEQSHLAIRRCQDPST
RHLLNDLIKLYALSNIEQDFAFFRNCNFLSSGKAFAISDAIKELCIGIKPYALQIINSDY
NILIDPLLNIPLANLDGDYINHMADCVGVPKSNL*iiky


Frame B:
---fyyqnirngirkkvlqdi*lkrfklf*qlviqcilildqfhifyrmnfiimhsfidl
nvfvql*srnlviqnqrn*hsfnlgmihyyts*iwqrliliftf*nkvi*qledvkilqq
diysmi*lnymlyqilnkillsleivisyplvkhlqylmqsknyvlvlnlmhfkslilii
tf*lihs*ifl*qiwmviiliiwlivlvfqnqiyk*ln


Frame C:
---fiiri*emv*errcyriyn*rgsnffsn**snvysy*insiysie*issscipl*i*
tysfncnret*sfkikeidipsile*fttihhrygkglfsslhfrtksssn*kmsrsfnk
tftq*fd*ticsiky*trfcfl*kl*flilw*sicni*cnqrtmywy*tlctsnh*f*l*
hfn*stlkysfskfgw*ly*syg*lcwcskikfinn*i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB344 (VHB344Q) /CSM/VH/VHB3-B/VHB344Q.Seq.d/                       1287   0.0
CHI334 (CHI334Q) /CSM/CH/CHI3-B/CHI334Q.Seq.d/                       1281   0.0
CHG861 (CHG861Q) /CSM/CH/CHG8-C/CHG861Q.Seq.d/                       1271   0.0
VHI151 (VHI151Q) /CSM/VH/VHI1-C/VHI151Q.Seq.d/                       1237   0.0
SSE273 (SSE273Q) /CSM/SS/SSE2-D/SSE273Q.Seq.d/                       1172   0.0
CHP742 (CHP742Q) /CSM/CH/CHP7-B/CHP742Q.Seq.d/                       1134   0.0
CHH133 (CHH133Q) /CSM/CH/CHH1-B/CHH133Q.Seq.d/                       1110   0.0
CHE779 (CHE779Q) /CSM/CH/CHE7-D/CHE779Q.Seq.d/                       1080   0.0
SSH291 (SSH291Q) /CSM/SS/SSH2-D/SSH291Q.Seq.d/                        517   e-146
VHB702 (VHB702Q) /CSM/VH/VHB7-A/VHB702Q.Seq.d/                         40   0.042

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF325944|AF325944.1 HIV-1 isolate Don21.34 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325943|AF325943.1 HIV-1 isolate Don18.51 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325942|AF325942.1 HIV-1 isolate Don18.33 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325941|AF325941.1 HIV-1 isolate Don18.26 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325940|AF325940.1 HIV-1 isolate Don14.43 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325939|AF325939.1 HIV-1 isolate Don14.13 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325938|AF325938.1 HIV-1 isolate Don14.6 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325937|AF325937.1 HIV-1 isolate Don11.12 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325936|AF325936.1 HIV-1 isolate Don11.7 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1
AF325934|AF325934.1 HIV-1 isolate Don2.31 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44   0.12   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AX155021_1(AX155021|pid:none) Sequence 67 from Patent WO0138484.       81   3e-14
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...    77   6e-13
AF051203_1(AF051203|pid:none) Picea mariana acyl-CoA oxidase hom...    76   1e-12
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...    75   2e-12
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...    75   2e-12
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...    73   6e-12
AC117081_72(AC117081|pid:none) Dictyostelium discoideum chromoso...    71   2e-11
U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...    70   7e-11
AK317051_1(AK317051|pid:none) Arabidopsis thaliana AT5G65110 mRN...    69   9e-11
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...    69   2e-10

 psg: 0.66  gvh: 0.36  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VHB344 is nuc

>VHB344Z.Seq
NNNNNNNNNNATTTTTATTATCAGAATATAAGAAATGGTATAAGAAAGAAGGTGTTACAG
GATATATAATTAAAGAGGTTCAAACTTTTTTAGCAACTAGTAATCCAATGTATACTCATA
CTAGATCAATTCCATATATTCTATCGAATGAATTTCATCATCATGCATTCCTTTATAGAT
TTGAACGTATTCGTTCAACTGTAATCGAGAAACTTAGTCATTCAAAATCAAAGAAATTGA
CATTCCTTCAATCTTGGAATGATTCACTACTATACATCATAGATATGGCAAAGGCTTATT
CTCATCTTTACATTTTAGAACAAAGTCATCTAGCAATTAGAAGATGTCAAGATCCTTCAA
CAAGACATTTACTCAATGATTTGATTAAACTATATGCTCTATCAAATATTGAACAAGATT
TTGCTTTCTTTAGAAATTGTAATTTCTTATCCTCTGGTAAAGCATTTGCAATATCTGATG
CAATCAAAGAACTATGTATTGGTATTAAACCTTATGCACTTCAAATCATTAATTCTGATT
ATAACATTTTAATTGATCCACTCTTAAATATTCCTTTAGCAAATTTGGATGGTGATTATA
TTAATCATATGGCTGATTGTGTTGGTGTTCCAAAATCAAATTTATAAATAATTAAATAT