VHB306
Library VH
(Link to library)
Clone ID VHB306
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16379-1
Original site URL
Representative seq. ID VHB306P
(Link to Original site)
Representative DNA sequence
>VHB306 (VHB306Q) /CSM/VH/VHB3-A/VHB306Q.Seq.d/
AAAATGAAAAAAATAAATTTAATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTT
AATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTT
GACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATTTACAT
CTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATT
GTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAG
ATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTA
GAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGT
ATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGAT
CGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTT
GATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATTACTATTTCATCTCATTTAACT
GCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAATGATGGTACTAAAACCTTT
ATTTTTGAACAAAXXXXXXXXXXTTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCC
AACCAAAGGTGAACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGG
TATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGC
AGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAA
TGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGC
TGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAA
AGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTT
TACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCA
AATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCAC
CTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGT
TCCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTG
GTTCAAAGCTTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCT
CTTACAATGAAAGATCTTTGTTTTAATAATTGATAGNATAAAAAAAAANAGACGAAAACT
AAAATAAACATCAAATTATTGTTTTCCT
sequence update 2002.10.25
Translated Amino Acid sequence
KMKKINLISIIIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLH
LRPNLKDFVFSGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAIL
EFQDELPVTENTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCF
DEPALKSFFNIKITISSHLTALSNMDTTSVIENNDGTKTFIFEQ---

---LKPLSKRLGFEPTKGEPSSDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSL
PSDIRSTVLATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFA
LSPSVRSQDSYMVFFTLPNRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDD
SQYNEVVNFFKDHPVPIADRSIKQDLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*ki
fvliidxikkxrrklk*tsnycfp


Translated Amino Acid sequence (All Frames)
Frame A:
KMKKINLISIIIFIISLVYFNFIHINNNIVEKMCDHKHLVDKVDRLVLPDNIVPSKYDLH
LRPNLKDFVFSGKVDITINIVKPTKKIIIHSIDIEIQSVKILNQQATSVTYYEPEEVAIL
EFQDELPVTENTILSIDFTGILNDKLKGFYRSKYVVNGEDRYIGTTQFEATDARRAFPCF
DEPALKSFFNIKITISSHLTALSNMDTTSVIENNDGTKTFIFEQ---

---f*nhfqnv*vssqpkvnhlqipc*eik*tlnwvcwvmlisllnvrkdsklskqtlqv
yhqifvlqyllqs*rmvvklinksslinilnll*slkriltfwyllwlqkrnwlkkpsis
lylhplevkiviwfslpsqivfvnslgltspktlikstkhlktllclvvslvvvsplkwm
ilntmksstfskiiqfqllivqlnki*kwlqliqigskllikiyqigfnqnknkisyner
slf**lix*kkxden*nkhqiivf

Frame B:
k*kk*i*frllfl*fhlfililyi*iii*lkkcviini*ltk*id*yyqiisyqvntiyi
ldqi*rilysaakltlqsillnqpkkslsiqltlkfnq*rs*inkllplptmnqkklqf*
nskmnyqlqkiqfsplislvf*mtn*kvsivqnmlsmvkivilvplnskplmlvvlshvl
mnll*nlslilkllfhli*llfqiwiqll*lkimmvlkplflnk---

---fettfktfrfranqr*tifrylvkr*skh*igyvg*c*yrc*m*ekirsfqsrlfkf
tirysfystcynrkeww*s*stnhh*sis*iffsr*keflpfgtcfgskrgig*kspqfr
fisir*ksr*lygflyppkscssirlglphqkl*snqrni*klsfvwsyhw*lshl*ng*
fsiq*srqlfqrssssnc*sfn*trfrngyn*fklvqsf*srfikldsikikiksltmkd
lcfnn**xkkkxtktkinikllfs

Frame C:
neknkfnfdyyfynftclf*fytyk**ys*knv*s*tfs*qsr*isitr*yrtk*irfts
*tkfkgfciqrqs*hynqyc*tnqknhypfn*h*nsiskdlkstsyfryll*trrscnfr
ipr*itsyrkynslh*fhwyfk*qikrflsfkiccqw*rslywyhsirsh*csscfpmf*
*tcfkifl*y*nyyfisfncsfkygynfcn*k**wy*nlyf*t---

---LKPLSKRLGFEPTKGEPSSDTLLRDKVNTKLGMLGDADIVAECKKRFEAFKADSSSL
PSDIRSTVLATIVKNGGEADQQIIIDQYLKSSLVAEKNSYLLVLALAPKEELVEKALNFA
LSPSVRSQDSYMVFFTLPNRVRQFAWAYLTKNFNQINETFKNSPLFGRIIGSCLTSKMDD
SQYNEVVNFFKDHPVPIADRSIKQDLEMVTINSNWFKAFNQDLSNWIQSK*k*nllq*ki
fvliidxikkxrrklk*tsnycfp

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB306 (VHB306Q) /CSM/VH/VHB3-A/VHB306Q.Seq.d/ 2609 0.0
VHK646 (VHK646Q) /CSM/VH/VHK6-B/VHK646Q.Seq.d/ 1483 0.0
AHC268 (AHC268Q) /CSM/AH/AHC2-C/AHC268Q.Seq.d/ 1477 0.0
AHO229 (AHO229Q) /CSM/AH/AHO2-B/AHO229Q.Seq.d/ 1471 0.0
AHM269 (AHM269Q) /CSM/AH/AHM2-C/AHM269Q.Seq.d/ 1471 0.0
AHB617 (AHB617Q) /CSM/AH/AHB6-A/AHB617Q.Seq.d/ 1471 0.0
VHP237 (VHP237Q) /CSM/VH/VHP2-B/VHP237Q.Seq.d/ 1469 0.0
VHB463 (VHB463Q) /CSM/VH/VHB4-C/VHB463Q.Seq.d/ 1469 0.0
AHK643 (AHK643Q) /CSM/AH/AHK6-B/AHK643Q.Seq.d/ 1467 0.0
AHD138 (AHD138Q) /CSM/AH/AHD1-B/AHD138Q.Seq.d/ 1465 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY631393|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds. 80 6e-19 3
CR382136|CR382136.1 Debaryomyces hansenii chromosome D of strain CBS767 of Debaryomyces hansenii. 56 0.003 1
CP000498|CP000498.1 Pichia stipitis CBS 6054 chromosome 4, complete sequence. 38 0.007 2
CR382123|CR382123.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis. 54 0.011 1
DN815134|AF148323_1 aminopeptidase PILS [Rattus norvegicus], mRNA sequence. 52 0.045 1
BP514490|BP514490.1 Hydra magnipapillata cDNA, clone:hydmg018bw_14. 52 0.045 1
AM466448|AM466448.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X000169.2, clone ENTAV 115. 46 0.070 3
AJ808281|AJ808281.1 Antirrhinum majus EST, clone 018_6_09_c24. 50 0.18 1
AM449384|AM449384.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X271592.5, clone ENTAV 115. 36 0.26 4
CP000123|CP000123.1 Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome. 40 0.27 18
dna update 2007. 3.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin... 245 3e-63
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-... 150 1e-34
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso... 150 1e-34
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso... 150 1e-34
AM270075_67(AM270075|pid:none) Aspergillus niger contig An04c014... 135 5e-30
AP007157_574(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 132 3e-29
EF678434_1(EF678434|pid:none) Picea sitchensis clone WS02921_A14... 129 2e-28
EF676179_1(EF676179|pid:none) Picea sitchensis clone WS02717_G19... 129 4e-28
AM920433_347(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 128 5e-28
AP005572_11(AP005572|pid:none) Oryza sativa Japonica Group genom... 127 8e-28
protein update 2009. 6.27
PSORT

psg: 0.99 gvh: 0.37 alm: 0.19 top: 0.37 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VHB306 is nuc

5' end seq. ID VHB306F
5' end seq.
>VHB306F.Seq
AAAATGAAAAAAATAAATTTAATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTT
AATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTT
GACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATTTACAT
CTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATT
GTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAG
ATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTA
GAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGT
ATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGAT
CGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTT
GATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATTACTATTTCATCTCATTTAACT
GCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAATGATGGTACTAAAACCTTT
ATTTTTGAACAAANNNNNNNNNN
Length of 5' end seq. 683
3' end seq. ID VHB306Z
3' end seq.
>VHB306Z.Seq
NNNNNNNNNNTTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCCAACCAAAGGTGAA
CCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGGTATGTTGGGTGAT
GCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGCAGACTCTTCAAGT
TTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAATGGTGGTGAAGCT
GATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGCTGAAAAGAATTCT
TACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAAAGCCCTCAATTTC
GCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTTTACCCTCCCAAAT
CGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCAAATCAACGAAACA
TTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCACCTCTAAAATGGAT
GATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGTTCCAATTGCTGAT
CGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTGGTTCAAAGCTTTT
AATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCTCTTACAATGAAAG
ATCTTTGTTTTAATAATTGATAGNATAAAAAAAAANAGACGAAAACTAAAATAAACATCA
AATTATTGTTTTCCT
Length of 3' end seq. 795
Connected seq. ID VHB306P
Connected seq.
>VHB306P.Seq
AAAATGAAAAAAATAAATTTAATTTCGATTATTATTTTTATAATTTCACTTGTTTATTTT
AATTTTATACATATAAATAATAATATAGTTGAAAAAATGTGTGATCATAAACATTTAGTT
GACAAAGTAGATAGATTAGTATTACCAGATAATATCGTACCAAGTAAATACGATTTACAT
CTTAGACCAAATTTAAAGGATTTTGTATTCAGCGGCAAAGTTGACATTACAATCAATATT
GTTAAACCAACCAAAAAAATCATTATCCATTCAATTGACATTGAAATTCAATCAGTAAAG
ATCTTAAATCAACAAGCTACTTCCGTTACCTACTATGAACCAGAAGAAGTTGCAATTTTA
GAATTCCAAGATGAATTACCAGTTACAGAAAATACAATTCTCTCCATTGATTTCACTGGT
ATTTTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAATATGTTGTCAATGGTGAAGAT
CGTTATATTGGTACCACTCAATTCGAAGCCACTGATGCTCGTCGTGCTTTCCCATGTTTT
GATGAACCTGCTTTAAAATCTTTCTTTAATATTAAAATTACTATTTCATCTCATTTAACT
GCTCTTTCAAATATGGATACAACTTCTGTAATTGAAAATAATGATGGTACTAAAACCTTT
ATTTTTGAACAAA----------TTTTGAAACCACTTTCAAAACGTTTAGGTTTCGAGCC
AACCAAAGGTGAACCATCTTCAGATACCTTGTTAAGAGATAAAGTAAACACTAAATTGGG
TATGTTGGGTGATGCTGATATCGTTGCTGAATGTAAGAAAAGATTCGAAGCTTTCAAAGC
AGACTCTTCAAGTTTACCATCAGATATTCGTTCTACAGTACTTGCTACAATCGTAAAGAA
TGGTGGTGAAGCTGATCAACAAATCATCATTGATCAATATCTTAAATCTTCTTTAGTCGC
TGAAAAGAATTCTTACCTTTTGGTACTTGCTTTGGCTCCAAAAGAGGAATTGGTTGAAAA
AGCCCTCAATTTCGCTTTATCTCCATCCGTTAGAAGTCAAGATAGTTATATGGTTTTCTT
TACCCTCCCAAATCGTGTTCGTCAATTCGCTTGGGCTTACCTCACCAAAAACTTTAATCA
AATCAACGAAACATTTAAAAACTCTCCTTTGTTTGGTCGTATCATTGGTAGTTGTCTCAC
CTCTAAAATGGATGATTCTCAATACAATGAAGTCGTCAACTTTTTCAAAGATCATCCAGT
TCCAATTGCTGATCGTTCAATTAAACAAGATTTAGAAATGGTTACAATTAATTCAAATTG
GTTCAAAGCTTTTAATCAAGATTTATCAAATTGGATTCAATCAAAATAAAAATAAAATCT
CTTACAATGAAAGATCTTTGTTTTAATAATTGATAGNATAAAAAAAAANAGACGAAAACT
AAAATAAACATCAAATTATTGTTTTCCT
Length of connected seq. 1458
Full length Seq ID -
Full length Seq. -
Length of full length seq. -