>VHB266 (VHB266Q) /CSM/VH/VHB2-C/VHB266Q.Seq.d/
XXXXXXXXXXCATGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGT
GAAATGTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGA
GTTTTAACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGA
AAAATATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGA
GCAGATAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATT
CGTCTTCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTC
AAGAATTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTTAGTTCAAAGAAGATG
AAGGTCAGCTGTAATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAA
ACTGTCAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTA
CGTATTATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACT
CAAGTCAGCAAATGGTTCACACCAAAGATCACTGCCATTAAAAAGGCGATCGAATACCTC
ATCGACCAAGAATACATTAGAAGAACTACTNAGACAATCCATCTGCAAGCAAA

---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVR
IMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTXTIHLQA

Frame A:
---mdtyk*tnsnsiqttk*nvikyyifriflqkklpr*sfnfplrffks*c*lktsqrk
ni*tynysipngnfinv*wsr*dy*ipy**ynwfr*ninsssiisfnqnryy*vfrtklq
eleqry*ihckf*i*fkedegql*yccsnw*n*tirrstncqrtrn*krtflqtsschct
yyei*kdndsq*shcgnyhssqqmvhtkdhch*kgdriphrprih*knyxdnpsask


Frame B:
---WTLTNKQTATPFKPPSEMLSSITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGK
IYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSIRLPLLALIKTGIIECSEPSFK
NWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVR
IMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTXTIHLQA


Frame C:
---ghlqinkqqlhsnhqvkcyqvlhisnlstkkvtkvef*lsftifqelmltqdkpkek
yinlqlqhtkwqfy*clmeqirlldsllmiqlv*mkhqfvfhy*l*skqvllsvqnqasr
igttilnsl*ilnlvqrr*rsavillfklvklnnqkvnklsankklkknvssnfklplyv
l*nlkrq*ltmislwklplksangshqrslplkrrsntsstkntleellrqsickq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB266 (VHB266Q) /CSM/VH/VHB2-C/VHB266Q.Seq.d/                       1346   0.0
AHO435 (AHO435Q) /CSM/AH/AHO4-B/AHO435Q.Seq.d/                       1314   0.0
VHB192 (VHB192Q) /CSM/VH/VHB1-D/VHB192Q.Seq.d/                       1304   0.0
VHC569 (VHC569Q) /CSM/VH/VHC5-C/VHC569Q.Seq.d/                       1300   0.0
VHP636 (VHP636Q) /CSM/VH/VHP6-B/VHP636Q.Seq.d/                       1296   0.0
VHP488 (VHP488Q) /CSM/VH/VHP4-D/VHP488Q.Seq.d/                       1296   0.0
VHK869 (VHK869Q) /CSM/VH/VHK8-C/VHK869Q.Seq.d/                       1296   0.0
CFK127 (CFK127Q) /CSM/CF/CFK1-B/CFK127Q.Seq.d/                       1296   0.0
AHE458 (AHE458Q) /CSM/AH/AHE4-C/AHE458Q.Seq.d/                       1296   0.0
AHE133 (AHE133Q) /CSM/AH/AHE1-B/AHE133Q.Seq.d/                       1296   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC761682|EC761682.1 PSE00005278 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.    80   3e-28  2
ED705833|ED705833.1 GM_WBb0050K24.f GM_WBb Glycine max genomic clone GM_WBb0050K24 5', genomic survey sequence.    44   0.058  2
AE001437|AE001437.1 Clostridium acetobutylicum ATCC 824, complete genome.    48   0.34   1
EH010358|EH010358.1 USDA-FP_183465 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt020_G05 5', mRNA sequence.    36   0.35   2
BX005438|BX005438.16 Zebrafish DNA sequence from clone DKEY-3E9 in linkage group 9.    38   1.1    4
BB436170|BB436170.1 Mus musculus adult pancreas Islet cells cDNA, RIKEN full-length enriched library, clone:C820017H22, 3' end partial sequence, similar to ddbj:AL050260 Homo sapiens mRNA; cDNA DKFZp564E1082 (from clone DKFZp564E1082).    46   1.3    1
AC167050|AC167050.2 Bos taurus clone CH240-108E22, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces.    46   1.3    1
CC588869|CC588869.1 CH240_387A10.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_387A10, genomic survey sequence.    46   1.3    1
AM180355|AM180355.1 Clostridium difficile 630 complete genome.     46   1.3    1
AM429459|AM429459.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X182648.47, clone ENTAV 115.    32   2.9    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633897_277(CU633897|pid:none) Podospora anserina genomic DNA c...   132   1e-29
AE017356_115(AE017356|pid:none) Cryptococcus neoformans var. neo...   127   3e-28
FB802359_1(FB802359|pid:none) Sequence 21632 from Patent WO20080...   127   4e-28
AK072402_1(AK072402|pid:none) Oryza sativa Japonica Group cDNA c...   126   6e-28
AL606454_2(AL606454|pid:none) Oryza sativa genomic DNA, chromoso...   126   6e-28
FB802423_1(FB802423|pid:none) Sequence 21696 from Patent WO20080...   124   3e-27
BT069454_1(BT069454|pid:none) Zea mays full-length cDNA clone ZM...   123   5e-27
FB802477_1(FB802477|pid:none) Sequence 21750 from Patent WO20080...   123   5e-27
U83410_1(U83410|pid:none) Human CUL-2 (cul-2) mRNA, complete cds.     122   8e-27
AC146568_18(AC146568|pid:none) Medicago truncatula clone mth2-10...   122   8e-27

 psg: 0.70  gvh: 0.50  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for VHB266 is nuc

>VHB266Z.Seq
NNNNNNNNNNCATGGACACTTACAAATAAACAAACAGCAACTCCATTCAAACCACCAAGT
GAAATGTTATCAAGTATTACATATTTCGAATCTTTCTACAAAAAAAGTTACCAAGGTAGA
GTTTTAACTTTCCTTTACGATTTTTCAAGAGCTGATGTTGACTCAAGACAAGCCAAAGGA
AAAATATATAAACTTACAACTACAGCATACCAAATGGCAATTTTATTAATGTTTAATGGA
GCAGATAAGATTACTAGATTCCTTATTAATGATACAATTGGTTTAGATGAAACATCAATT
CGTCTTCCATTATTAGCTTTAATCAAAACAGGTATTATTGAGTGTTCAGAACCAAGCTTC
AAGAATTGGAACAACGATACTGAATTCACTGTAAATTCTAAATTTAGTTCAAAGAAGATG
AAGGTCAGCTGTAATATTGCTGTTCAAATTGGTGAAACTAAACAATCAGAAGGTCAACAA
ACTGTCAGCGAACAAGAAATTGAAAAAGAACGTTTCTTCAAACTTCAAGCTGCCATTGTA
CGTATTATGAAATCTAAAAAGACAATGACTCACAATGATCTCACTGTGGAAACTACCACT
CAAGTCAGCAAATGGTTCACACCAAAGATCACTGCCATTAAAAAGGCGATCGAATACCTC
ATCGACCAAGAATACATTAGAAGAACTACTNAGACAATCCATCTGCAAGCAAA