>VHB262 (VHB262Q) /CSM/VH/VHB2-C/VHB262Q.Seq.d/
XXXXXXXXXXTCAAAGTATGAAGGATACCATTTTACAAGATTGGGGTATGATGAGTAAAA
CTTATGCATTATGTTTCTTACCAACCAATGATCCATCNTCACTCAATATCAATGGATTAA
ACTTTGAAAAAATTTCAGATGTTGCATCTGTAGCTTACGAAATTGCAATGATTCAAATGT
TATTACCAACTACTTATCAAATTTACTTTACACCAGCTGGTTATTGGGTACCTTATTCAG
ATGGTGATTTCGCTTATAGTGATAACTCTGGAACCTATATTATGGCCACTATCGAGTATA
GTAATTCTTATCCTCCAAAGGAATTGACCGATAAGTTATGGAATAATGGGGTTTCAAAAC
AAGAATTTTTCTGGTCAGCTTATGGTTGGAATTTAGCTACCTCACTCACCTATTACAATA
TGGCAAACAAGTTTGGTAATATCTATAAATTAGCTTTTCCAACAATTAAAAATTTTACAG
GAGTACCAATGCAATTTGTAATGACCAATGATGGTGATAATCTTTGTAATTTCCCAGTCA
AAACTCATTTTGCAAAATTTTTTTCTATATATTACAGTTGTGGAGATCTTGGTCATCATT
ATTTCGACATTGCCGTAAATGATATTAACGATAACAAGGTTGCAAAT

---QSMKDTILQDWGMMSKTYALCFLPTNDPSSLNINGLNFEKISDVASVAYEIAMIQML
LPTTYQIYFTPAGYWVPYSDGDFAYSDNSGTYIMATIEYSNSYPPKELTDKLWNNGVSKQ
EFFWSAYGWNLATSLTYYNMANKFGNIYKLAFPTIKNFTGVPMQFVMTNDGDNLCNFPVK
THFAKFFSIYYSCGDLGHHYFDIAVNDINDNKVAN

Frame A:
---QSMKDTILQDWGMMSKTYALCFLPTNDPSSLNINGLNFEKISDVASVAYEIAMIQML
LPTTYQIYFTPAGYWVPYSDGDFAYSDNSGTYIMATIEYSNSYPPKELTDKLWNNGVSKQ
EFFWSAYGWNLATSLTYYNMANKFGNIYKLAFPTIKNFTGVPMQFVMTNDGDNLCNFPVK
THFAKFFSIYYSCGDLGHHYFDIAVNDINDNKVAN


Frame B:
---kv*ripfykigv**vklmhyvsyqpmihxhsismd*tlkkfqmlhl*ltklq*fkcy
yqllikftlhqlvigyliqmvislivitlepilwplssivililqrn*pisygimgfqnk
nfsgqlmvgi*lphspitiwqtslvisin*lfqqlkilqeyqcnl**pmmviifvisqsk
lilqnfflyitvveilviiistlp*miltitrlq


Frame C:
---kyegyhftrlgyde*nlcimfltnq*sixtqyqwikl*knfrccicslrncndsnvi
tnylsnllytswllgtlfrw*frl***lwnlyyghyrv**flsskgidr*vme*wgfktr
iflvslwlefsylthllqygkqvw*yl*isfsnn*kfyrstnaicndq*w**sl*fpsqn
sfckiffyilqlwrswsslfrhcrk*y*r*qgck

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB262 (VHB262Q) /CSM/VH/VHB2-C/VHB262Q.Seq.d/                       1215   0.0
VHB807 (VHB807Q) /CSM/VH/VHB8-A/VHB807Q.Seq.d/                       1025   0.0
AHK866 (AHK866Q) /CSM/AH/AHK8-C/AHK866Q.Seq.d/                        981   0.0
VHJ768 (VHJ768Q) /CSM/VH/VHJ7-C/VHJ768Q.Seq.d/                        979   0.0
VHI685 (VHI685Q) /CSM/VH/VHI6-D/VHI685Q.Seq.d/                        979   0.0
CHI654 (CHI654Q) /CSM/CH/CHI6-C/CHI654Q.Seq.d/                        979   0.0
VHJ646 (VHJ646Q) /CSM/VH/VHJ6-B/VHJ646Q.Seq.d/                        975   0.0
VHI895 (VHI895Q) /CSM/VH/VHI8-D/VHI895Q.Seq.d/                        975   0.0
SHG311 (SHG311Q) /CSM/SH/SHG3-A/SHG311Q.Seq.d/                        975   0.0
VHC206 (VHC206Q) /CSM/VH/VHC2-A/VHC206Q.Seq.d/                        973   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY282568|AY282568.1 Dictyostelium discoideum calcium up-regulated protein (cupB) gene, complete cds.  1078   0.0    2
AY282573|AY282573.1 Dictyostelium discoideum calcium up-regulated protein (cupG) gene, complete cds.   720   0.0    3
AY282569|AY282569.1 Dictyostelium discoideum calcium up-regulated protein (cupC) gene, complete cds.   180   e-133  8
AY282572|AY282572.1 Dictyostelium discoideum calcium up-regulated protein (cupF) gene, complete cds.   180   e-132  8
AY282574|AY282574.1 Dictyostelium discoideum calcium up-regulated protein (cupA) gene, complete cds.   178   e-129  8
AY282571|AY282571.1 Dictyostelium discoideum calcium up-regulated protein (cupE) gene, complete cds.   157   e-110  8
AY282570|AY282570.1 Dictyostelium discoideum calcium up-regulated protein (cupD) gene, complete cds.   176   2e-85  5
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    54   0.005  1
CE322726|CE322726.1 tigr-gss-dog-17000361361739 Dog Library Canis familiaris genomic, genomic survey sequence.    48   0.30   1
CC579539|CC579539.1 CH240_458B24.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_458B24, genomic survey sequence.    36   0.74   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7Z1Z9) RecName: Full=Calcium up-regulated protein G;  &AY28257...   406   e-112
(Q7Z202) RecName: Full=Calcium up-regulated protein C;  &AY28256...   330   3e-89
(Q7Z1I0) RecName: Full=Calcium up-regulated protein F;                328   8e-89
AY282572_1(AY282572|pid:none) Dictyostelium discoideum calcium u...   328   8e-89
(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        75   1e-12
CP000830_1829(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    39   0.099
AM236940_1(AM236940|pid:none) Human echovirus 11 partial polypro...    36   1.1
CP000769_3433(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...    35   2.4
AJ241447_1(AJ241447|pid:none) Echovirus 7 VP1 gene, partial, iso...    34   3.2
AM778958_86(AM778958|pid:none) Microcystis aeruginosa PCC 7806 g...    34   3.2

 psg: 0.75  gvh: 0.45  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for VHB262 is cyt

>VHB262Z.Seq
NNNNNNNNNNTCAAAGTATGAAGGATACCATTTTACAAGATTGGGGTATGATGAGTAAAA
CTTATGCATTATGTTTCTTACCAACCAATGATCCATCNTCACTCAATATCAATGGATTAA
ACTTTGAAAAAATTTCAGATGTTGCATCTGTAGCTTACGAAATTGCAATGATTCAAATGT
TATTACCAACTACTTATCAAATTTACTTTACACCAGCTGGTTATTGGGTACCTTATTCAG
ATGGTGATTTCGCTTATAGTGATAACTCTGGAACCTATATTATGGCCACTATCGAGTATA
GTAATTCTTATCCTCCAAAGGAATTGACCGATAAGTTATGGAATAATGGGGTTTCAAAAC
AAGAATTTTTCTGGTCAGCTTATGGTTGGAATTTAGCTACCTCACTCACCTATTACAATA
TGGCAAACAAGTTTGGTAATATCTATAAATTAGCTTTTCCAACAATTAAAAATTTTACAG
GAGTACCAATGCAATTTGTAATGACCAATGATGGTGATAATCTTTGTAATTTCCCAGTCA
AAACTCATTTTGCAAAATTTTTTTCTATATATTACAGTTGTGGAGATCTTGGTCATCATT
ATTTCGACATTGCCGTAAATGATATTAACGATAACAAGGTTGCAAAT