VHB258
Library VH
(Link to library)
Clone ID VHB258
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID VHB258P
(Link to Original site)
Representative DNA sequence
>VHB258 (VHB258Q) /CSM/VH/VHB2-C/VHB258Q.Seq.d/
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAGAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGGTGATGTTTTATTCACGCCAXXXXXXXXXXTGATGGAAATAAATTCAT
CTTTTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGT
ATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGG
TGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGC
ACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTA
CGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGG
ATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGA
AGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGC
CACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATC
AAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGC
TTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAA
ATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAA
ACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
iyiiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistii
yk*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpi
lwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**RFWFNMEQC
IIQWVMFYSR---

---DGNKFIFLVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPN
TNCYMTQQAQISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSI
ASQYVPITEENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWI
AGVVIAILALAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGI
EDDDAQIL


Translated Amino Acid sequence (All Frames)
Frame A:
iyiiflhylfi*tnwrkl*nedfiyfiyfysdycwlstftkyysnl*akqh*leaistii
yk*r*lcincrykikecfkkinkwwy*lvikct**trkyylw*crilskr**yygckfpi
lwknpnfsik*crsnifnlssfst*scisfttfry*gfsdctfr*fhfn**RFWFNMEQC
IIQWVMFYSR---

---*wk*ihlfsrg*i*yrsndwc*fnkciaislr*flnailyhslyfr*knnl*nc*tk
yqllydptstnfk*il*mysrrf*m*ywlrkcrr*qfr**wfylwysiwifrtiels*in
cfticsnh*rklytrsnlyqikrfqksrchtmcrwc*cnlftrdchvsikkffkwwqrld
rwccycyscfswswwfwflrf*esrfqtkiikngwffkgrski*cyry*tklis***iwy
*r**csnfk

Frame B:
filfffticlykqiggnykmkissilfifiaiivglalsqntiptykqnsinwkqfqply
tnrddyvlivdtrsknvlkrstnggidwssnvldkqgniiygnagyyqrddnimvvnfps
ygktqisvsndagqtfstsavfphkvvsvsphldieglviarsdnfilisedfgltwnna
ssng*cfiha---

---DGNKFIFLVEDEYDIGQMIGVDLTNVLPSPCDDSSMQSYTTRCILGEKTTYRTVKPN
TNCYMTQQAQISNKYCECTVEDFECDIGYESADDSSSDNDGSTSGIPSGSSEQLNCRKSI
ASQYVPITEENCTPGQTYIKSKGFRRVAATQCVGGVNATYSPEIVMCPSKNSSSGGKGWI
AGVVIAILALAGLGGFGFYVFKNPDFKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGI
EDDDAQIL

Frame C:
lyyfsslsvyinkleeiik*rfhlfylfl*rllla*hfhkilfqlisktaligsnfnhyi
qiemimy*l*iqdqrmf*kdqqmvvlighqmylinkeilfmvmqdiikemiilwl*ishl
mekpkfqyqmmqvkhfqpqqffhiklyqfhhi*ilrv**lhvpiisf*lvkilv*hgtmh
hpmgdvlftp---

---meinssf**rmnmisvk*lvli*qmychllamipqcnliplvvf*vkkqliellnqi
pivi*pnkhkfqinivnvqskilnvilvtkvqtiavpimmvlplvfhldlqnn*ivvnql
lhnmfqslkkivhqvkpisnqkvseeslphnv*vvlmqlihqrlscvhqkilqvvakvgs
lvllllfll*lvlvvlvstflriqisnkny*kwlvfqrsvqnivlsvlnqth*lmmnlvl
kmmmlkf*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB258 (VHB258Q) /CSM/VH/VHB2-C/VHB258Q.Seq.d/ 2557 0.0
VHJ874 (VHJ874Q) /CSM/VH/VHJ8-D/VHJ874Q.Seq.d/ 1463 0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/ 1463 0.0
VHP781 (VHP781Q) /CSM/VH/VHP7-D/VHP781Q.Seq.d/ 1463 0.0
VHP137 (VHP137Q) /CSM/VH/VHP1-B/VHP137Q.Seq.d/ 1463 0.0
VHP112 (VHP112Q) /CSM/VH/VHP1-A/VHP112Q.Seq.d/ 1463 0.0
VHJ874 (VHJ874Q) /CSM/VH/VHJ8-D/VHJ874Q.Seq.d/ 1463 0.0
VHI416 (VHI416Q) /CSM/VH/VHI4-A/VHI416Q.Seq.d/ 1463 0.0
VHD108 (VHD108Q) /CSM/VH/VHD1-A/VHD108Q.Seq.d/ 1463 0.0
VHB825 (VHB825Q) /CSM/VH/VHB8-B/VHB825Q.Seq.d/ 1463 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

DY895407|DY895407.1 CeleSEQ15231 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ15231, mRNA sequence. 54 0.010 1
AP007522|AP007522.1 Lotus japonicus genomic DNA, clone:LjT37O09, TM0694. 54 0.010 1
AC172403|AC172403.2 Strongylocentrotus purpuratus clone R3-14L2, WORKING DRAFT SEQUENCE, 25 unordered pieces. 40 0.033 9
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 0.12 15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 0.21 11
BX890576|BX890576.12 Zebrafish DNA sequence from clone DKEY-203O14 in linkage group 18. 34 0.32 8
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence. 36 0.48 11
AX345935|AX345935.1 Sequence 1006 from Patent WO0200928. 38 0.51 3
AC150973|AC150973.2 Bos taurus clone CH240-125H21, WORKING DRAFT SEQUENCE, 10 unordered pieces. 44 0.52 6
AC110142|AC110142.4 Rattus norvegicus clone CH230-297L4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 36 0.61 9
dna update 2007. 3.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 77 1e-12
AB093294_1(AB093294|pid:none) Mus musculus mRNA for mKIAA1329 pr... 76 3e-12
(Q9EPR5) RecName: Full=VPS10 domain-containing receptor SorCS2; ... 76 3e-12
BC156053_1(BC156053|pid:none) Synthetic construct Homo sapiens c... 75 7e-12
AB037750_1(AB037750|pid:none) Homo sapiens mRNA for KIAA1329 pro... 74 1e-11
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=... 72 6e-11
AF284755_1(AF284755|pid:none) Mus musculus VPS10 domain receptor... 71 1e-10
(Q9JLC4) RecName: Full=VPS10 domain-containing receptor SorCS1; ... 71 1e-10
AY099453_1(AY099453|pid:none) Homo sapiens VPS10 domain receptor... 69 5e-10
AB209142_1(AB209142|pid:none) Homo sapiens mRNA for VPS10 domain... 69 5e-10
protein update 2009. 6.27
PSORT

psg: 0.92 gvh: 0.41 alm: 0.22 top: 0.67 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.07 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for VHB258 is nuc

5' end seq. ID VHB258F
5' end seq.
>VHB258F.Seq
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAGAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGGTGATGTTTTATTCACGCCANNNNNNNNNN
Length of 5' end seq. 582
3' end seq. ID VHB258Z
3' end seq.
>VHB258Z.Seq
NNNNNNNNNNTGATGGAAATAAATTCATCTTTTTAGTAGAGGATGAATATGATATCGGTC
AAATGATTGGTGTTGATTTAACAAATGTATTGCCATCTCCTTGCGATGATTCCTCAATGC
AATCTTATACCACTCGTTGTATTTTAGGTGAAAAAACAACTTATAGAACTGTTAAACCAA
ATACCAATTGTTATATGACCCAACAAGCACAAATTTCAAATAAATATTGTGAATGTACAG
TCGAAGATTTTGAATGTGATATTGGTTACGAAAGTGCAGACGATAGCAGTTCCGATAATG
ATGGTTCTACCTCTGGTATTCCATCTGGATCTTCAGAACAATTGAATTGTCGTAAATCAA
TTGCTTCACAATATGTTCCAATCACTGAAGAAAATTGTACACCAGGTCAAACCTATATCA
AATCAAAAGGTTTCAGAAGAGTCGCTGCCACACAATGTGTAGGTGGTGTTAATGCAACTT
ATTCACCAGAGATTGTCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGA
TCGCTGGTGTTGTTATTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACG
TTTTTAAGAATCCAGATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCG
GTCCAAAATATAGTGTTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTA
TTGAAGATGATGATGCTCAAATTTTAAA
Length of 3' end seq. 748
Connected seq. ID VHB258P
Connected seq.
>VHB258P.Seq
ATTTATATTATTTTTCTTCACTATCTGTTTATATAAACAAATTGGAGGAAATTATAAAAT
GAAGATTTCATCTATTTTATTTATTTTTATAGCGATTATTGTTGGCTTAGCACTTTCACA
AAATACTATTCCAACTTATAAGCAAAACAGCATTAATTGGAAGCAATTTCAACCATTATA
TACAAATAGAGATGATTATGTATTAATTGTAGATACAAGATCAAAGAATGTTTTAAAAAG
ATCAACAAATGGTGGTATTGATTGGTCATCAAATGTACTTGATAAACAAGGAAATATTAT
TTATGGTAATGCAGGATATTATCAAAGAGATGATAATATTATGGTTGTAAATTTCCCATC
TTATGGAAAAACCCAAATTTCAGTATCAAATGATGCAGGTCAAACATTTTCAACCTCAGC
AGTTTTTCCACATAAAGTTGTATCAGTTTCACCACATTTAGATATTGAGGGTTTAGTGAT
TGCACGTTCCGATAATTTCATTTTAATTAGTGAAGATTTTGGTTTAACATGGAACAATGC
ATCATCCAATGGGTGATGTTTTATTCACGCCA----------TGATGGAAATAAATTCAT
CTTTTTAGTAGAGGATGAATATGATATCGGTCAAATGATTGGTGTTGATTTAACAAATGT
ATTGCCATCTCCTTGCGATGATTCCTCAATGCAATCTTATACCACTCGTTGTATTTTAGG
TGAAAAAACAACTTATAGAACTGTTAAACCAAATACCAATTGTTATATGACCCAACAAGC
ACAAATTTCAAATAAATATTGTGAATGTACAGTCGAAGATTTTGAATGTGATATTGGTTA
CGAAAGTGCAGACGATAGCAGTTCCGATAATGATGGTTCTACCTCTGGTATTCCATCTGG
ATCTTCAGAACAATTGAATTGTCGTAAATCAATTGCTTCACAATATGTTCCAATCACTGA
AGAAAATTGTACACCAGGTCAAACCTATATCAAATCAAAAGGTTTCAGAAGAGTCGCTGC
CACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTGTCATGTGTCCATC
AAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTATTGCTATTCTTGC
TTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAGATTTCAAACAAAA
ATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTGTTATCGGTATTAA
ACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATGCTCAAATTTTAAA
Length of connected seq. 1310
Full length Seq ID -
Full length Seq. -
Length of full length seq. -