VHB238
Library VH
(Link to library)
Clone ID VHB238
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15541-1
Original site URL
Representative seq. ID VHB238P
(Link to Original site)
Representative DNA sequence
>VHB238 (VHB238Q) /CSM/VH/VHB2-B/VHB238Q.Seq.d/
AACCAATGCATCACAACAAAACTTTCCTTATTTATTCACTCATTAACATTAGAACTTACA
AATGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATT
CACTCTAAAAATAGCGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCA
AATGCTAGAAACGTCATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAA
GCACGTCACACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCA
ATGTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATT
AAACAATCTACTCTTCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATG
TCAAAATATTCAGATAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAA
AATGTAAAATTAGCAGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAAT
TTTGATATTAAAGAACAAAGAGATTATATTATGAAAGTTATTATTGATAATTCCGAATCA
CAAAXXXXXXXXXXTCGCAAGTACCNTCAAAGAAACCCATTAAACCATACGCTCAACAAA
TGTTGGTCNTTTTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTC
TCCTTGCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAA
ATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACA
TTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTT
GCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATG
CTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCA
TTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATG
ATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTC
AAGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAG
ACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCT
TGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACA
ACAAAATAATTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNATTA
TGCNATTTATCAATTTTTCCAAAAAAACATAATTTCA
sequence update 2002.10.25
Translated Amino Acid sequence
NQCITTKLSLFIHSLTLELTNEERDVQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEP
NARNVIKNTLLQGLGSPKYEARHTVAIVISRIGLIEIPYAMWEELIPALFKNIESGSEGI
KQSTLQTLGYICEEIDPNVMSKYSDNVLRVITDGIKDESQNVKLAGIQALCFALEFVKKN
FDIKEQRDYIMKVIIDNSESQ---

---SQVPSKKPIKPYAQQMLVXLFNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNF
LPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAK
PSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQG
LKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNK
IIREFVNNGIQKGIPYAIMXFINFSKKT*f


Translated Amino Acid sequence (All Frames)
Frame A:
NQCITTKLSLFIHSLTLELTNEERDVQIRQLAGIVLKNSIHSKNSERNEILIKQWASIEP
NARNVIKNTLLQGLGSPKYEARHTVAIVISRIGLIEIPYAMWEELIPALFKNIESGSEGI
KQSTLQTLGYICEEIDPNVMSKYSDNVLRVITDGIKDESQNVKLAGIQALCFALEFVKKN
FDIKEQRDYIMKVIIDNSESQ---

---SQVPSKKPIKPYAQQMLVXLFNVFKNQSIIIYEEALLAIGAIILALDADFEPYFSNF
LPILVNFLKNVDFGSVTNIAIGIVGDLARAFGKKFSGVCAEIVPLIVSDLTNPKLSMNAK
PSAISCLCDIAISVGADFIPFLPMVMPILHQASTTEIDDEDFLNELRETIFQTYTGIIQG
LKSDNQIEELNQYINPMLDFVVLINDDPERYDSVTSAALALLGDLAQAMGDSIRNLLNNK
IIREFVNNGIQKGIPYAIMXFINFSKKT*f

Frame B:
tnasqqnfpylfth*h*nlqmkremykfvn*qvlf*rivftlkiakemkf*lnnghqlnq
mletslkilfykv*dhqnmkhvtl*ll*fhvlvllkfhtqcgkn*sqhylktlkvvqkvl
nnllfkhlvifvkkliqmlcqniqimy*ellqmvskmnhkm*n*qvfkhyalh*nl*rki
lilknkeiil*kllliipnhk---

---rkyxqrnplnhtlnkcwsfystysrinqssstkrlslplvpsswlwmlisnltfqis
fqsl*tssrmsilvp*qtlqlvslvi*lvllvrnslvfalksfh*slvispiqnsl*mln
qvlsvvsvisplvlvpisflsfqwlcqffikplplksmmktf*mnsvklsskltlvsfkv
srviiksknsintsiqc*tllyl*mmiqnvmilllllpwpylvi*lklwvivleif*ttk
*lenl*tmvfkkvyhmxlcxlsifpkkhnf

Frame C:
pmhhnktfliyslinirtyk*rerctnssisrycfke*ysl*k*rkk*nfn*tmgin*tk
c*krh*kysftrfritki*stshcsycnftywsy*nsirnvgrinpsii*kh*kwfrry*
tiyssntwlyl*rn*skcyvkifr*ciksyyrwyqr*itkckisryssimlcirickekf
*y*rtkrlyyesyy**frit---

---astxketh*tirstnvgxfiqriqesinhhlrrgspchwchhlgfgc*frtllfkfp
snpcklpqecrfwfrnkhcnwyrw*fsscfw*eilwclr*nrsidr**shqsktlyec*t
kcyqlsl*yrh*cwcrfhsfpsngyansssslyh*nr**rlfk*tp*nylpnlhwyhsrs
qe**snrrtqsihqsnvrlcctyk**srtl*fcyfcclgltw*fsssyg**y*ksfkqqn
n*rickqwyskryticxyaiyqffqkniis

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB238 (VHB238Q) /CSM/VH/VHB2-B/VHB238Q.Seq.d/ 2692 0.0
AHO282 (AHO282Q) /CSM/AH/AHO2-D/AHO282Q.Seq.d/ 1518 0.0
AHI438 (AHI438Q) /CSM/AH/AHI4-B/AHI438Q.Seq.d/ 1507 0.0
CHR745 (CHR745Q) /CSM/CH/CHR7-B/CHR745Q.Seq.d/ 1505 0.0
AHD723 (AHD723Q) /CSM/AH/AHD7-A/AHD723Q.Seq.d/ 1505 0.0
VHB409 (VHB409Q) /CSM/VH/VHB4-A/VHB409Q.Seq.d/ 1497 0.0
AHJ124 (AHJ124Q) /CSM/AH/AHJ1-A/AHJ124Q.Seq.d/ 1497 0.0
AHH216 (AHH216Q) /CSM/AH/AHH2-A/AHH216Q.Seq.d/ 1497 0.0
AHD469 (AHD469Q) /CSM/AH/AHD4-C/AHD469Q.Seq.d/ 1497 0.0
AHE720 (AHE720Q) /CSM/AH/AHE7-A/AHE720Q.Seq.d/ 1489 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AR887972|AR887972.1 Sequence 1633 from patent US 7060458. 50 0.17 1
DQ834250|DQ834250.1 Staphylococcus epidermidis bacteriophage PH15, complete genome. 50 0.17 1
EK709090|EK709090.1 1092405863529 Global-Ocean-Sampling_GS-33-01-01-1P3-1P8KB marine metagenome genomic clone 1061001564696 3', genomic survey sequence. 48 0.68 1
AC183443|AC183443.3 Echinops telfairi clone CH238-96N19, complete sequence. 48 0.68 1
BH763052|BH763052.1 BMBAC334G11SP6_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence. 34 1.2 3
AM427313|AM427313.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X230333.11, clone ENTAV 115. 32 1.5 2
EK588267|EK588267.1 1092301105127 Global-Ocean-Sampling_GS-32-02-01-1P0-1P3KB marine metagenome genomic clone 1061001351723 3', genomic survey sequence. 36 1.8 2
EJ919817|EJ919817.1 1093018597239 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002857286 5', genomic survey sequence. 36 1.8 2
EJ846776|EJ846776.1 1093017859358 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002891299 3', genomic survey sequence. 36 1.8 2
EJ362537|EJ362537.1 1092963692208 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002361295 3', genomic survey sequence. 36 1.8 2
dna update 2007. 3.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017344_109(AE017344|pid:none) Cryptococcus neoformans var. neo... 135 3e-30
CP001327_234(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 131 5e-29
BC052711_1(BC052711|pid:none) Mus musculus karyopherin (importin... 127 7e-28
(P70168) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 127 7e-28
AK314780_1(AK314780|pid:none) Homo sapiens cDNA, FLJ95650, highl... 126 2e-27
PDBN(1IBR)B MOL_ID: 1;MOL_ID: 1; MOLECULE: RAN; MOLECULE: RAN; C... 126 2e-27
(Q14974) RecName: Full=Importin subunit beta-1; AltName: Full=Ka... 126 2e-27
FN357382_14(FN357382|pid:none) Schistosoma mansoni genome sequen... 119 3e-25
BX842622_14(BX842622|pid:none) Neurospora crassa DNA linkage gro... 119 3e-25
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo... 118 5e-25
protein update 2009. 6.27
PSORT

psg: 0.90 gvh: 0.48 alm: 0.26 top: 0.17 tms: 0.20 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
8.0 %: cytoplasmic
8.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VHB238 is end

5' end seq. ID VHB238F
5' end seq.
>VHB238F.Seq
AACCAATGCATCACAACAAAACTTTCCTTATTTATTCACTCATTAACATTAGAACTTACA
AATGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATT
CACTCTAAAAATAGCGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCA
AATGCTAGAAACGTCATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAA
GCACGTCACACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCA
ATGTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATT
AAACAATCTACTCTTCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATG
TCAAAATATTCAGATAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAA
AATGTAAAATTAGCAGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAAT
TTTGATATTAAAGAACAAAGAGATTATATTATGAAAGTTATTATTGATAATTCCGAATCA
CAAANNNNNNNNNN
Length of 5' end seq. 614
3' end seq. ID VHB238Z
3' end seq.
>VHB238Z.Seq
NNNNNNNNNNTCGCAAGTACCNTCAAAGAAACCCATTAAACCATACGCTCAACAAATGTT
GGTCNTTTTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTCTCCT
TGCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAAATTT
CCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACATTGC
AATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTTGCGC
TGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATGCTAA
ACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCATTCC
TTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATGATGA
AGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTCAAGG
TCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAGACTT
TGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCTTGGC
CTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACAACAA
AATAATTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNATTATGCN
ATTTATCAATTTTTCCAAAAAAACATAATTTCA
Length of 3' end seq. 813
Connected seq. ID VHB238P
Connected seq.
>VHB238P.Seq
AACCAATGCATCACAACAAAACTTTCCTTATTTATTCACTCATTAACATTAGAACTTACA
AATGAAGAGAGAGATGTACAAATTCGTCAATTAGCAGGTATTGTTTTAAAGAATAGTATT
CACTCTAAAAATAGCGAAAGAAATGAAATTTTAATTAAACAATGGGCATCAATTGAACCA
AATGCTAGAAACGTCATTAAAAATACTCTTTTACAAGGTTTAGGATCACCAAAATATGAA
GCACGTCACACTGTAGCTATTGTAATTTCACGTATTGGTCTTATTGAAATTCCATACGCA
ATGTGGGAAGAATTAATCCCAGCATTATTTAAAAACATTGAAAGTGGTTCAGAAGGTATT
AAACAATCTACTCTTCAAACACTTGGTTATATTTGTGAAGAAATTGATCCAAATGTTATG
TCAAAATATTCAGATAATGTATTAAGAGTTATTACAGATGGTATCAAAGATGAATCACAA
AATGTAAAATTAGCAGGTATTCAAGCATTATGCTTTGCATTAGAATTTGTAAAGAAAAAT
TTTGATATTAAAGAACAAAGAGATTATATTATGAAAGTTATTATTGATAATTCCGAATCA
CAAA----------TCGCAAGTACCNTCAAAGAAACCCATTAAACCATACGCTCAACAAA
TGTTGGTCNTTTTATTCAACGTATTCAAGAATCAATCAATCATCATCTACGAAGAGGCTC
TCCTTGCCATTGGTGCCATCATCTTGGCTTTGGATGCTGATTTCGAACCTTACTTTTCAA
ATTTCCTTCCAATCCTTGTAAACTTCCTCAAGAATGTCGATTTTGGTTCCGTAACAAACA
TTGCAATTGGTATCGTTGGTGATTTAGCTCGTGCTTTTGGTAAGAAATTCTCTGGTGTTT
GCGCTGAAATCGTTCCATTGATCGTTAGTGATCTCACCAATCCAAAACTCTCTATGAATG
CTAAACCAAGTGCTATCAGTTGTCTCTGTGATATCGCCATTAGTGTTGGTGCCGATTTCA
TTCCTTTCCTTCCAATGGTTATGCCAATTCTTCATCAAGCCTCTACCACTGAAATCGATG
ATGAAGACTTTTTAAATGAACTCCGTGAAACTATCTTCCAAACTTACACTGGTATCATTC
AAGGTCTCAAGAGTGATAATCAAATCGAAGAACTCAATCAATACATCAATCCAATGTTAG
ACTTTGTTGTACTTATAAATGATGATCCAGAACGTTATGATTCTGTTACTTCTGCTGCCT
TGGCCTTACTTGGTGATTTAGCTCAAGCTATGGGTGATAGTATTAGAAATCTTTTAAACA
ACAAAATAATTAGAGAATTTGTAAACAATGGTATTCAAAAAGGTATACCATATGCNATTA
TGCNATTTATCAATTTTTCCAAAAAAACATAATTTCA
Length of connected seq. 1407
Full length Seq ID -
Full length Seq. -
Length of full length seq. -