VHB236
Library VH
(Link to library)
Clone ID VHB236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12076-1
Original site URL
Representative seq. ID VHB236P
(Link to Original site)
Representative DNA sequence
>VHB236 (VHB236Q) /CSM/VH/VHB2-B/VHB236Q.Seq.d/
CATTGGAGGAGTGTTCAGGTGATCAATTGTCTGTGGACCCATTGGTGAATAAACGTTGTG
CAATGTCTGGTGGTACAAAGGTTGTTAAAACTCAAGCCAAAGAGAAGGATGCTAAAATCT
TTGCAATGGTTACCAATACAAGTTGGTTAACTACAAAGGGTGGTTTGGTATTGTCAATGT
TGTATCCAAAGGAATCTCATTTCAAATTCTTTGAACAATCTTTGAAATTCTTGGGTGTAC
TTTGTTTCATTGCATTGATTGGTTTCGGTGTTTCAGTATGGAGATTAATTAAAGCAGGCG
AACAATTAAGTGAGGTAGTTACCAAAGCATTGGATTTAATTACAATTGTTGTTCCACCAG
CTTTACCAATGGCACAAAGTGTTGGTACAGGTTTCAGTATCGTACGTTTAAAGGCAAATA
AAATCTTTTGTATTTCACCACCAAGAGTTAATATGGCAGGTAAAGTTGAAGTCTATTGTT
TCGATAAAACTGGTACACTCACTGAAGATGGTTTAGATTTGTTTGGTGTATTACCATCCC
ATCAAGATAGTAATAATAGTGGTGGTTTTGGTACAGTAATTAAAACCGATTTAAATCGTA
TGACAGGTCCATTATTTTTAACAATGGCCACCCTGTCATACTTTGXXXXXXXXXXCAATT
CATTGGTATGTACTCATTGATTCAATTTTGTCAAGTTATTCTATTGTATTTCGATGGTTC
CGTATTGAATAACTATCAATATCTCTATCAAGATCTTTGGGTAATTTTCCCATTGGTAAT
TTTCATGGGTCGTACTGAACCATGTAGTAAACTCTCCATCAAAAGACCATCCTCTCGTTT
AATTAGTTCAACAGTTATTGGTAGTTTACTCAGTCATGTCACATTAACATTTGTTTTCCA
ATTATTGGTTTACATTTTCGTACGTCGTAATTCATGGTATAAGGATTTACCCGACACAAG
CTCCAATGAAAATGAACCAAGATTAGATCATTTATTGGCATCCCTTTTCATCNTATGGTA
ATATGCAATACTCTGTCATGTGTTTCATTTACTCTTGGGGTAAACCTTTCCTTAGACCAA
TTTATACCAATCGTGCATTATTCATCTTCTTTTGTGTAACACTTACAACTTCTTCATTAT
TATTATTGTTGCCTGTTTCCATTAGATTCTTTGGTACAACATGGTTAATGGATTTACCAG
TACGTTGGAGAGTTGAACTCTTAATTCTCTTTATTATCAATGCTGCTCTCGCTATGGCTG
CCGAATGGATTATCATTGTCTATCGTGAAATCAGATCAAAATCAAAGAGAAAATTAAAAC
AAAAACAAAATTCCGATCCAAATATTATTGCAAAAAATACTGTTAATGAAAGATATACTA
GTTTAAATTAAATTTTAGTATTTAAAAAATTATTAAACAGTAAAAATAAATAAATAAAAT
AAAATAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
LEECSGDQLSVDPLVNKRCAMSGGTKVVKTQAKEKDAKIFAMVTNTSWLTTKGGLVLSML
YPKESHFKFFEQSLKFLGVLCFIALIGFGVSVWRLIKAGEQLSEVVTKALDLITIVVPPA
LPMAQSVGTGFSIVRLKANKIFCISPPRVNMAGKVEVYCFDKTGTLTEDGLDLFGVLPSH
QDSNNSGGFGTVIKTDLNRMTGPLFLTMATLSYF---

---QFIGMYSLIQFCQVILLYFDGSVLNNYQYLYQDLWVIFPLVIFMGRTEPCSKLSIKR
PSSRLISSTVIGSLLSHVTLTFVFQLLVYIFVRRNSWYKDLPDTSSNENEPRLDHLLASL
FIXW*yailchvfhlllg*tfp*tnlyqsciihlllcntynffiiiivacfh*ilwynmv
ngftstles*tlnslyyqccsrygcrmdyhcls*nqikikekiktktkfrskyyckkyc*
*kiy*fklnfsi*kiikq*k*inkik*k


Translated Amino Acid sequence (All Frames)
Frame A:
hwrsvqvinclwthw*invvqclvvqrllklkpkrrmlkslqwlpiqvg*lqrvvwycqc
ciqrnlisnslnnl*nswvyfvslh*lvsvfqygd*lkqann*vr*lpkhwi*lqllfhq
lyqwhkvlvqvsvsyv*rqiksfvfhhqeliwqvklksivsiklvhslkmv*iclvyyhp
ikiviivvvlvq*lkpi*iv*qvhyf*qwppchtl---

---QFIGMYSLIQFCQVILLYFDGSVLNNYQYLYQDLWVIFPLVIFMGRTEPCSKLSIKR
PSSRLISSTVIGSLLSHVTLTFVFQLLVYIFVRRNSWYKDLPDTSSNENEPRLDHLLASL
FIXW*yailchvfhlllg*tfp*tnlyqsciihlllcntynffiiiivacfh*ilwynmv
ngftstles*tlnslyyqccsrygcrmdyhcls*nqikikekiktktkfrskyyckkyc*
*kiy*fklnfsi*kiikq*k*inkik*k

Frame B:
iggvfr*sivcgpige*tlcnvwwykgc*nssqregc*nlcngyqyklvnykgwfgivnv
vskgisfqil*tifeilgctlfhcidwfrcfsmein*srrtik*gsyqsigfnynccsts
ftngtkcwyrfqyrtfkgk*nllyfttks*ygr*s*sllfr*nwyth*rwfrfvwcitip
sr****wwfwysn*nrfksydrsiifnnghpvil---

---nslvcth*fnfvklfycismvpy*itinisikifg*fshw*fswvvlnhvvnspskd
hplv*lvqqllvvysvmsh*hlfsnywftfsyvvihgiriyptqapmkmnqd*iiywhpf
ssygnmqysvmcfiyswgkpflrpiytnralfiffcvtlttsslllllpvsirffgttwl
mdlpvrwrvellilfiinaalamaaewiiivyreirskskrklkqkqnsdpniiakntvn
erytsln*ilvfkkllnsknk*ik*nk

Frame C:
LEECSGDQLSVDPLVNKRCAMSGGTKVVKTQAKEKDAKIFAMVTNTSWLTTKGGLVLSML
YPKESHFKFFEQSLKFLGVLCFIALIGFGVSVWRLIKAGEQLSEVVTKALDLITIVVPPA
LPMAQSVGTGFSIVRLKANKIFCISPPRVNMAGKVEVYCFDKTGTLTEDGLDLFGVLPSH
QDSNNSGGFGTVIKTDLNRMTGPLFLTMATLSYF---

---ihwyvlidsilssysivfrwfrie*lsislsrslgnfpignfhgsy*tm**tlhqkt
ilsfn*fnsyw*ftqschinicfpiiglhfrts*fmv*gftrhklq*k*tkirsfigipf
hxmvicntlscvsftlgvnlsldqfipivhysssfv*hlqllhyyycclfpldslvqhg*
wiyqyvgelns*fsllsmllslwlpnglslsivksdqnqren*nknkipiqillqkillm
kdilv*ikf*ylkny*tvkink*nkik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB236 (VHB236Q) /CSM/VH/VHB2-B/VHB236Q.Seq.d/ 2484 0.0
VHL407 (VHL407Q) /CSM/VH/VHL4-A/VHL407Q.Seq.d/ 1215 0.0
SHL369 (SHL369Q) /CSM/SH/SHL3-C/SHL369Q.Seq.d/ 1203 0.0
VHA543 (VHA543Q) /CSM/VH/VHA5-B/VHA543Q.Seq.d/ 1191 0.0
SHF178 (SHF178Q) /CSM/SH/SHF1-D/SHF178Q.Seq.d/ 1176 0.0
VHA610 (VHA610Q) /CSM/VH/VHA6-A/VHA610Q.Seq.d/ 1156 0.0
SHK720 (SHK720Q) /CSM/SH/SHK7-A/SHK720Q.Seq.d/ 1148 0.0
VHK185 (VHK185Q) /CSM/VH/VHK1-D/VHK185Q.Seq.d/ 295 1e-78
CHN894 (CHN894Q) /CSM/CH/CHN8-D/CHN894Q.Seq.d/ 74 7e-12
CHH611 (CHH611Q) /CSM/CH/CHH6-A/CHH611Q.Seq.d/ 62 3e-08

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D37634|D37634.1 Caenorhabditis elegans cDNA clone yk5f9 : 5' end, single read. 58 7e-04 1
BJ121889|BJ121889.1 Caenorhabditis elegans cDNA clone:yk1282b01 : 5' end, single read. 58 7e-04 1
Z70271|Z70271.1 Caenorhabditis elegans Cosmid W08D2. 58 7e-04 1
CR382139|CR382139.1 Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii. 44 0.007 2
AC158133|AC158133.1 Mus musculus chromosome 3 clone RP23-130C6 map 3, WORKING DRAFT SEQUENCE, 8 unordered pieces. 38 0.35 8
CL325240|CL325240.1 RPCI44_479P1.r RPCI-44 Sus scrofa genomic clone RPCI44_479P1, genomic survey sequence. 44 0.63 2
EC313449|EC313449.1 REPROTRACTF081141I8 POSSUM_01-POSSUM-C-REPROTRACT-2KB Trichosurus vulpecula cDNA clone 1061023012758, mRNA sequence. 48 0.69 1
AC189922|AC189922.2 Sorex araneus clone SA_Ba-101C15, WORKING DRAFT SEQUENCE, 7 ordered pieces. 48 0.69 1
CR380959|CR380959.1 Candida glabrata strain CBS138 chromosome M complete sequence. 48 0.69 1
AL354825|AL354825.10 Human DNA sequence from clone RP11-303J13 on chromosome 13. 34 1.5 2
dna update 2007. 3.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU928179_647(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 174 7e-42
FM992689_210(FM992689|pid:none) Candida dubliniensis CD36 chromo... 169 2e-40
AE016819_800(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 168 5e-40
AP007150_595(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 163 1e-38
CR380959_492(CR380959|pid:none) Candida glabrata strain CBS138 c... 162 2e-38
CU640366_567(CU640366|pid:none) Podospora anserina genomic DNA c... 162 4e-38
CR382130_932(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 157 9e-37
FN392322_957(FN392322|pid:none) Pichia pastoris GS115 chromosome... 152 4e-35
FN357891_6(FN357891|pid:none) Schistosoma mansoni genome sequenc... 151 5e-35
FN357891_7(FN357891|pid:none) Schistosoma mansoni genome sequenc... 151 5e-35
protein update 2009. 6.27
PSORT

psg: 0.75 gvh: 0.42 alm: 0.20 top: 0.50 tms: 0.27 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for VHB236 is pla

5' end seq. ID VHB236F
5' end seq.
>VHB236F.Seq
CATTGGAGGAGTGTTCAGGTGATCAATTGTCTGTGGACCCATTGGTGAATAAACGTTGTG
CAATGTCTGGTGGTACAAAGGTTGTTAAAACTCAAGCCAAAGAGAAGGATGCTAAAATCT
TTGCAATGGTTACCAATACAAGTTGGTTAACTACAAAGGGTGGTTTGGTATTGTCAATGT
TGTATCCAAAGGAATCTCATTTCAAATTCTTTGAACAATCTTTGAAATTCTTGGGTGTAC
TTTGTTTCATTGCATTGATTGGTTTCGGTGTTTCAGTATGGAGATTAATTAAAGCAGGCG
AACAATTAAGTGAGGTAGTTACCAAAGCATTGGATTTAATTACAATTGTTGTTCCACCAG
CTTTACCAATGGCACAAAGTGTTGGTACAGGTTTCAGTATCGTACGTTTAAAGGCAAATA
AAATCTTTTGTATTTCACCACCAAGAGTTAATATGGCAGGTAAAGTTGAAGTCTATTGTT
TCGATAAAACTGGTACACTCACTGAAGATGGTTTAGATTTGTTTGGTGTATTACCATCCC
ATCAAGATAGTAATAATAGTGGTGGTTTTGGTACAGTAATTAAAACCGATTTAAATCGTA
TGACAGGTCCATTATTTTTAACAATGGCCACCCTGTCATACTTTGNNNNNNNNNN
Length of 5' end seq. 655
3' end seq. ID VHB236Z
3' end seq.
>VHB236Z.Seq
NNNNNNNNNNCAATTCATTGGTATGTACTCATTGATTCAATTTTGTCAAGTTATTCTATT
GTATTTCGATGGTTCCGTATTGAATAACTATCAATATCTCTATCAAGATCTTTGGGTAAT
TTTCCCATTGGTAATTTTCATGGGTCGTACTGAACCATGTAGTAAACTCTCCATCAAAAG
ACCATCCTCTCGTTTAATTAGTTCAACAGTTATTGGTAGTTTACTCAGTCATGTCACATT
AACATTTGTTTTCCAATTATTGGTTTACATTTTCGTACGTCGTAATTCATGGTATAAGGA
TTTACCCGACACAAGCTCCAATGAAAATGAACCAAGATTAGATCATTTATTGGCATCCCT
TTTCATCNTATGGTAATATGCAATACTCTGTCATGTGTTTCATTTACTCTTGGGGTAAAC
CTTTCCTTAGACCAATTTATACCAATCGTGCATTATTCATCTTCTTTTGTGTAACACTTA
CAACTTCTTCATTATTATTATTGTTGCCTGTTTCCATTAGATTCTTTGGTACAACATGGT
TAATGGATTTACCAGTACGTTGGAGAGTTGAACTCTTAATTCTCTTTATTATCAATGCTG
CTCTCGCTATGGCTGCCGAATGGATTATCATTGTCTATCGTGAAATCAGATCAAAATCAA
AGAGAAAATTAAAACAAAAACAAAATTCCGATCCAAATATTATTGCAAAAAATACTGTTA
ATGAAAGATATACTAGTTTAAATTAAATTTTAGTATTTAAAAAATTATTAAACAGTAAAA
ATAAATAAATAAAATAAAATAAAAA
Length of 3' end seq. 805
Connected seq. ID VHB236P
Connected seq.
>VHB236P.Seq
CATTGGAGGAGTGTTCAGGTGATCAATTGTCTGTGGACCCATTGGTGAATAAACGTTGTG
CAATGTCTGGTGGTACAAAGGTTGTTAAAACTCAAGCCAAAGAGAAGGATGCTAAAATCT
TTGCAATGGTTACCAATACAAGTTGGTTAACTACAAAGGGTGGTTTGGTATTGTCAATGT
TGTATCCAAAGGAATCTCATTTCAAATTCTTTGAACAATCTTTGAAATTCTTGGGTGTAC
TTTGTTTCATTGCATTGATTGGTTTCGGTGTTTCAGTATGGAGATTAATTAAAGCAGGCG
AACAATTAAGTGAGGTAGTTACCAAAGCATTGGATTTAATTACAATTGTTGTTCCACCAG
CTTTACCAATGGCACAAAGTGTTGGTACAGGTTTCAGTATCGTACGTTTAAAGGCAAATA
AAATCTTTTGTATTTCACCACCAAGAGTTAATATGGCAGGTAAAGTTGAAGTCTATTGTT
TCGATAAAACTGGTACACTCACTGAAGATGGTTTAGATTTGTTTGGTGTATTACCATCCC
ATCAAGATAGTAATAATAGTGGTGGTTTTGGTACAGTAATTAAAACCGATTTAAATCGTA
TGACAGGTCCATTATTTTTAACAATGGCCACCCTGTCATACTTTG----------CAATT
CATTGGTATGTACTCATTGATTCAATTTTGTCAAGTTATTCTATTGTATTTCGATGGTTC
CGTATTGAATAACTATCAATATCTCTATCAAGATCTTTGGGTAATTTTCCCATTGGTAAT
TTTCATGGGTCGTACTGAACCATGTAGTAAACTCTCCATCAAAAGACCATCCTCTCGTTT
AATTAGTTCAACAGTTATTGGTAGTTTACTCAGTCATGTCACATTAACATTTGTTTTCCA
ATTATTGGTTTACATTTTCGTACGTCGTAATTCATGGTATAAGGATTTACCCGACACAAG
CTCCAATGAAAATGAACCAAGATTAGATCATTTATTGGCATCCCTTTTCATCNTATGGTA
ATATGCAATACTCTGTCATGTGTTTCATTTACTCTTGGGGTAAACCTTTCCTTAGACCAA
TTTATACCAATCGTGCATTATTCATCTTCTTTTGTGTAACACTTACAACTTCTTCATTAT
TATTATTGTTGCCTGTTTCCATTAGATTCTTTGGTACAACATGGTTAATGGATTTACCAG
TACGTTGGAGAGTTGAACTCTTAATTCTCTTTATTATCAATGCTGCTCTCGCTATGGCTG
CCGAATGGATTATCATTGTCTATCGTGAAATCAGATCAAAATCAAAGAGAAAATTAAAAC
AAAAACAAAATTCCGATCCAAATATTATTGCAAAAAATACTGTTAATGAAAGATATACTA
GTTTAAATTAAATTTTAGTATTTAAAAAATTATTAAACAGTAAAAATAAATAAATAAAAT
AAAATAAAAA
Length of connected seq. 1440
Full length Seq ID -
Full length Seq. -
Length of full length seq. -