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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB212
Library VH
(Link to library)
Clone ID VHB212
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>VHB212 (VHB212Q) /CSM/VH/VHB2-A/VHB212Q.Seq.d/
ATATTTNATTTTTTTTTTCTTTTTTACTTCACATTTAGGTCCTATATTCTAATTCATAAT
TAATTTTATTTGTTTTTTTTTGTAAAACATAAAAAAANGGCTGAATCACAAGTTGAACGT
TTCACATTCCAAGCTGAAATTAATCANCTTATGTCCCTTATTATTAATACTTTTTATTCA
AATAAANAAGTNTTTTTAANANAATTGATTTCAAANGCATCTGANGCCTTAAATAAAATT
CGTTNCCAATCATTAACTGATGCATCAGTTTTGGAATCAAAAACTGAACTCGAAATTAAA
ATTATTCCANATAAAACTGCCAAAACTNTTACNCTCATTGATAGNGGTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ifxffflfyftfrsyilihn*FYLFFFVKHKKXAESQVERFTFQAEINXLMSLIINTFYS
NKXVFLXXLISXASXALNKIRXQSLTDASVLESKTELEIKIIPXKTAKTXTLIDX---
Translated Amino Acid sequence (All Frames) 
Frame A:
ifxffflfyftfrsyilihn*FYLFFFVKHKKXAESQVERFTFQAEINXLMSLIINTFYS
NKXVFLXXLISXASXALNKIRXQSLTDASVLESKTELEIKIIPXKTAKTXTLIDX---


Frame B:
yxiffffftshlgpif*fiinficffl*nikkxlnhklnvshsklklixlcplllilfiq
ixkxf*xn*fqxhlxp*ikfvxnh*lmhqfwnqklnsklklfxiklpkllxslix---


Frame C:
ixfffsfllhi*vlysns*lilfvffckt*kxg*its*tfhips*n*sxyvpyy*yflfk
*xsxfxxidfkxi*xlk*nsxpiin*cisfgikn*trn*nysx*ncqnxyxh**x---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB212 (VHB212Q) /CSM/VH/VHB2-A/VHB212Q.Seq.d/                        432   e-120
VHG251 (VHG251Q) /CSM/VH/VHG2-C/VHG251Q.Seq.d/                        412   e-114
VHD527 (VHD527Q) /CSM/VH/VHD5-B/VHD527Q.Seq.d/                        383   e-105
CHM170 (CHM170Q) /CSM/CH/CHM1-C/CHM170Q.Seq.d/                        383   e-105
CHM117 (CHM117Q) /CSM/CH/CHM1-A/CHM117Q.Seq.d/                        381   e-105
VHM505 (VHM505Q) /CSM/VH/VHM5-A/VHM505Q.Seq.d/                        377   e-104
VHI641 (VHI641Q) /CSM/VH/VHI6-B/VHI641Q.Seq.d/                        377   e-104
VHH112 (VHH112Q) /CSM/VH/VHH1-A/VHH112Q.Seq.d/                        377   e-104
VFO212 (VFO212Q) /CSM/VF/VFO2-A/VFO212Q.Seq.d/                        377   e-104
SHE415 (SHE415Q) /CSM/SH/SHE4-A/SHE415Q.Seq.d/                        377   e-104
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   408   e-110  1
AZ217962|AZ217962.1 Sheared DNA-118B11.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-118B11, genomic survey sequence.    78   2e-10  1
BI509865|BI509865.1 BB170025B10D06.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170025B10D06 5', mRNA sequence.    44   4e-10  3
DB740459|DB740459.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10044K22, 5' end partial sequence.    44   4e-10  3
DB749509|DB749509.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10076D09, 5' end partial sequence.    44   4e-10  3
DB736354|DB736354.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10029E16, 5' end partial sequence.    44   4e-10  3
DB747672|DB747672.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10069L05, 5' end partial sequence.    44   4e-10  3
DB738083|DB738083.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10036I06, 5' end partial sequence.    44   4e-10  3
DB737739|DB737739.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10035G07, 5' end partial sequence.    44   4e-10  3
DB745635|DB745635.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10062J17, 5' end partial sequence.    44   4e-10  3
dna update 2007. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             107   2e-22
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   107   2e-22
AF165818_7(AF165818|pid:none) Guillardia theta nucleomorph chrom...    85   9e-16
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...    84   1e-15
DQ383787_1(DQ383787|pid:none) Rhodomonas salina 82 kDa heat shoc...    83   3e-15
(P08238) RecName: Full=Heat shock protein HSP 90-beta;          ...    82   8e-15
AK294643_1(AK294643|pid:none) Homo sapiens cDNA FLJ53619 complet...    82   8e-15
(P34058) RecName: Full=Heat shock protein HSP 90-beta; AltName: ...    82   8e-15
AL136543_1(AL136543|pid:none) Homo sapiens mRNA; cDNA DKFZp761K0...    82   8e-15
(Q5R710) RecName: Full=Heat shock protein HSP 90-beta;  &CR86031...    82   8e-15
protein update 2009. 6.27
PSORT 

 psg: 0.46  gvh: 0.69  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VHB212 is cyt
5' end seq. ID VHB212F
5' end seq. 
>VHB212F.Seq
ATATTTNATTTTTTTTTTCTTTTTTACTTCACATTTAGGTCCTATATTCTAATTCATAAT
TAATTTTATTTGTTTTTTTTTGTAAAACATAAAAAAANGGCTGAATCACAAGTTGAACGT
TTCACATTCCAAGCTGAAATTAATCANCTTATGTCCCTTATTATTAATACTTTTTATTCA
AATAAANAAGTNTTTTTAANANAATTGATTTCAAANGCATCTGANGCCTTAAATAAAATT
CGTTNCCAATCATTAACTGATGCATCAGTTTTGGAATCAAAAACTGAACTCGAAATTAAA
ATTATTCCANATAAAACTGCCAAAACTNTTACNCTCATTGATAGNGGTNNNNNNNNNN
Length of 5' end seq. 358
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -