>VHB169 (VHB169Q) /CSM/VH/VHB1-C/VHB169Q.Seq.d/
XXXXXXXXXXGTNTNTGTAAATGTCATAAAAGTAANTGTAGATCGGTNACNGTCGAGGTC
ANTGGNCAATGTCNCAATGATGATAATGGNGANGCNTANTGTAGNNGTAACGAAAGATGT
CGAGNGTACCCTTTGCNAGATCGGATACTTGTNTTGGTTATGATGGTTGTAATTCTCCAA
AAGGTNAATGTGATAAAGCAACATCACATGTGTCATTGTTTAGATAAAAATTTTAATAAT
GATTATNGTAATGGTNCTAGAANTATTCCAGATGGT

---XCKCHKSXCRSVTVEVXGQCXNDDNGXAXCXXNERCRXYPLXDRILVLVMMVVILQK
VNVIKQHHMCHCLDKNFNNDYXNGXRXIPDG

Frame A:
---xx*ms*k*x*igxxrgxwxmsq***wxxxx*x*rkmsxvpfarsdtcxgydgcnspk
gxcdkatshvslfr*kf***lx*wx*xysrw


Frame B:
---XCKCHKSXCRSVTVEVXGQCXNDDNGXAXCXXNERCRXYPLXDRILVLVMMVVILQK
VNVIKQHHMCHCLDKNFNNDYXNGXRXIPDG


Frame C:
---xvnvikvxvdrxxsrsxxnvxmmimxxxxvxvtkdvextlcxigylxwl*wl*fskr
xm**snitcviv*ikilimixvmvlexfqm

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHB169 (VHB169Q) /CSM/VH/VHB1-C/VHB169Q.Seq.d/                        404   e-112
VHN628 (VHN628Q) /CSM/VH/VHN6-B/VHN628Q.Seq.d/                        349   1e-95
VHN271 (VHN271Q) /CSM/VH/VHN2-C/VHN271Q.Seq.d/                        349   1e-95
VHJ520 (VHJ520Q) /CSM/VH/VHJ5-A/VHJ520Q.Seq.d/                        349   1e-95
VHH825 (VHH825Q) /CSM/VH/VHH8-B/VHH825Q.Seq.d/                        349   1e-95
VHH642 (VHH642Q) /CSM/VH/VHH6-B/VHH642Q.Seq.d/                        349   1e-95
VHG807 (VHG807Q) /CSM/VH/VHG8-A/VHG807Q.Seq.d/                        349   1e-95
VHF731 (VHF731Q) /CSM/VH/VHF7-B/VHF731Q.Seq.d/                        349   1e-95
VHE655 (VHE655Q) /CSM/VH/VHE6-C/VHE655Q.Seq.d/                        349   1e-95
VHE350 (VHE350Q) /CSM/VH/VHE3-C/VHE350Q.Seq.d/                        349   1e-95

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR940352|CR940352.2 Theileria annulata genomic DNA chromosome 3.    48   0.12   1
BB922258|BB922258.1 Trifolium pratense cDNA clone:RCE29450.        46   0.49   1
CZ178988|CZ178988.1 MIAA-13J24b.b1 Meloidogyne incognita BAC end sequence library (MIAAGSS 001) Meloidogyne incognita genomic, genomic survey sequence.    46   0.49   1
AF438488|AF438488.1 Cyrtogenius sp. dry01 12S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    46   0.49   1
BY504621|BY504621.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830086E18, 3' end partial sequence.    44   1.9    1
EK498486|EK498486.1 1095505197502 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005908980 5', genomic survey sequence.    44   1.9    1
EK381856|EK381856.1 1095469464895 Global-Ocean-Sampling_GS-31-01-01-1P3-1P8KB marine metagenome genomic clone 1061005828789 5', genomic survey sequence.    44   1.9    1
EJ316604|EJ316604.1 1095403296369 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061005525615 5', genomic survey sequence.    44   1.9    1
EJ061370|EJ061370.1 1095456068289 Global-Ocean-Sampling_GS-26-01-01-1P3-1P6KB marine metagenome genomic clone 1061005648488 5', genomic survey sequence.    44   1.9    1
DH262164|DH262164.1 Oryzias latipes Fosmid clone:GOLWFno587_a17, reverse end.    44   1.9    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 244,087,310

 psg: 0.78  gvh: 0.49  alm: 0.21  top: 0.63  tms: 0.07  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.11  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHB169 is nuc

>VHB169Z.Seq
NNNNNNNNNNGTNTNTGTAAATGTCATAAAAGTAANTGTAGATCGGTNACNGTCGAGGTC
ANTGGNCAATGTCNCAATGATGATAATGGNGANGCNTANTGTAGNNGTAACGAAAGATGT
CGAGNGTACCCTTTGCNAGATCGGATACTTGTNTTGGTTATGATGGTTGTAATTCTCCAA
AAGGTNAATGTGATAAAGCAACATCACATGTGTCATTGTTTAGATAAAAATTTTAATAAT
GATTATNGTAATGGTNCTAGAANTATTCCAGATGGT