VHB167 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHB167
Library	VH (Link to library)
Clone ID	VHB167 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10801-1\|Contig-U12701-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHB1-C/VHB167Q.Seq.d/
Representative seq. ID	VHB167P (Link to Original site)
Representative DNA sequence	>VHB167 (VHB167Q) /CSM/VH/VHB1-C/VHB167Q.Seq.d/ GTNNTCCTTACAATAATAAAATAATAATAAATAATGGATAATACAGNATTAGTTATTAAT AAAATATGGCAAGATCAAAATATANTAANGGTGGTGGTAGTAGTNACAATGATAATGATA GTGGTAGTGATGATGATAGACATTTCATTTCAAAAAGTTCAATGAAATCCACAGTAAATG TTCAACAACCACAACAAAAATTTCAAGATCTTTATTGTAACTCTAATACATGGTCAGCNG GTAATTATGGAGGAAAAGTANTAAATGCAACTAAAGTNCANCAGAAACANNTATTATCAA TTACAGNAGCATCCAAATTCAAAAGAAGTTAAAATTAAATTACCTTTAAAAGATTGGTTA GAATATTTAAAAGAGAATAGTAATAAAGAATCATCAATTCCATACTCAATTGAAAAATCA TCATATATTGCAAATGTTGAAGATTTTAATGTATCTTTTAAATGTAATTTTGAAATTCAT GTTTTCCCTGAACCAAATTCAAAAGATAATAATAATAATAATAAGAATAATAATTGTGAT CAAGTTCAAATACCATTATTACCATCAACAGTTTGTATAACATCATCATCAATTCAATTC AGTGGTAAAAATGATGATGAATCATGTATTGGTATTTATCAAGATGCTCATAGXXXXXXX XXXCCATTATTATTATCCTATAAATTCCCTTGTACCAAAGTATGCATTATCATTCAAAGT TATTAAACATCAAGATTTACCAGTATTGGTTGCATTTTGTCCAAGTGCTCATTTCACTGC TACTTGTAGCTCAGAGGGTGCAATGTTGACCAAATGTTTATTCACTATTCGTAATGAACA ACAACAATATATTCGTGTTACAATTCCACATCAATTTGAAATTTGGAGTACAATTGTCTC TAAAAAAGCAGTTAAACCAGCCATAGATGATCAAGGTTGTTTAATGATTCCATTGAATAA ATCCTCTGGTACATCCTCTGGTGTTCAAAAAACTTTTAAAGTTGAATTGGTCTATAAACA TACTCGTGATTTCGAATTTTTAAATGTTGGTACTTTTGGTGTAGTTTTCCCACAAATAGA TATTCCAATTAGTACACTATCAATATCTCTTTACCTTCCAACCGATTATAAATATGGTGA ATTCACTGGAAATGCAAAAGAGATCTTTAGATTTTCAAATGATCAAACCAATGATGCTGA TGATAATGATTTTGAAGGTTTAGGTGCTCCTAATTCATACTCATCAAATGTAATGCCCCA ACAACAAGCTTTCATACCTCAACAACAATCATACATATCAAATGTTGCTCAACCTCAACT TTCAAGTTTTGATACAAATGAAGATTCAAGTAGTCAAATGATGGGTTTAAAA
sequence update	2002.10.25
Translated Amino Acid sequence	vxltiik**imdntxlvinkiwqdqnixxvvvvvtmimivvvmmidisfqkvqnpqm fnnhnknfkifivtlihgqxvimeekxMQLKXXRNXYYQLQXHPNSKEVKIKLPLKDWL EYLKENSNKESSIPYSIEKSSYIANVEDFNVSFKCNFEIHVFPEPNSKDNNNNNKNNNCD QVQIPLLPSTVCITSSSIQFSGKNDDESCIGIYQDAH--- ---HYYYPINSLVPKYALSFKVIKHQDLPVLVAFCPSAHFTATCSSEGAMLTKCLFTIRN EQQQYIRVTIPHQFEIWSTIVSKKAVKPAIDDQGCLMIPLNKSSGTSSGVQKTFKVELVY KHTRDFEFLNVGTFGVVFPQIDIPISTLSISLYLPTDYKYGEFTGNAKEIFRFSNDQTND ADDNDFEGLGAPNSYSSNVMPQQQAFIPQQQSYISNVAQPQLSSFDTNEDSSSQMMGLK
Translated Amino Acid sequence (All Frames)	Frame A: vxltiik**imdntxlvinkiwqdqnixxvvvvvtmimivvvmmidisfqkvqnpqm fnnhnknfkifivtlihgqxvimeekxMQLKXXRNXYYQLQXHPNSKEVKIKLPLKDWL EYLKENSNKESSIPYSIEKSSYIANVEDFNVSFKCNFEIHVFPEPNSKDNNNNNKNNNCD QVQIPLLPSTVCITSSSIQFSGKNDDESCIGIYQDAH--- ---plllsykfpctkvciiiqsytsrftsigcilskcsfhcyllrgcnvdqmfihys* tttiyscynstsinleynclksstshrsrlfndsieilwyilwcsknfsigl tysfrifkcwyfwcsfptnrysnytinislpsnrliwihwkckrdlifksnq c***frfrcsfilikcnapttsfhtsttiihikccststfkfykrfksndgfk Frame B: xslq*nnnkwiiqxllikygkikixxwwxqw**tfhfkkfneihskc sttttkisrslllymvsxlwrksxkcnsxxetxiinyxsiqiqkklklnylkig* nikriviknhqfhtqlknhhilqmlkilmyllnvilkfmfslnqiqkiiiiiiriiivi kfkyhyyhqqfvhhhqfnsvvkmmmnhvlvfikmli--- ---HYYYPINSLVPKYALSFKVIKHQDLPVLVAFCPSAHFTATCSSEGAMLTKCLFTIRN EQQQYIRVTIPHQFEIWSTIVSKKAVKPAIDDQGCLMIPLNKSSGTSSGVQKTFKVELVY KHTRDFEFLNVGTFGVVFPQIDIPISTLSISLYLPTDYKYGEFTGNAKEIFRFSNDQTND ADDNDFEGLGAPNSYSSNVMPQQQAFIPQQQSYISNVAQPQLSSFDTNEDSSSQMMGLK Frame C: xpynnkiiinngyxisynmarskyxxgggssxndndsgsdddrhfiskssmkstvnv qqpqqkfqdlycnsntwsagnyggkvxnatkvxqkxxlsitxaskfkrsnitfkrlvr ifkre*riinsilnkiiiyckcrfcifmfnscfptkfkr****els ssntiitinslyniiinsiqwk**imywylsrcs--- ---iiiiliplyqsmhyhskllnikiyqywlhfvqvlislllvaqrvqcpnvyslfvm nnnnifvlqfhinlkfgvqlslkkqlnqpmikvvfhinplvhplvfkkllklnwsi nilvisnfmlvllvfshkifqlvhyqylftfqpiinmvnslemqkrsldfqmikpmm lmimilkvvllihthqmcpnnklsylnnnhtyqmllnlnfqvliqmkiqvvkwv*
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHB167 (VHB167Q) /CSM/VH/VHB1-C/VHB167Q.Seq.d/ 1602 0.0 VHB516 (VHB516Q) /CSM/VH/VHB5-A/VHB516Q.Seq.d/ 1352 0.0 VHB160 (VHB160Q) /CSM/VH/VHB1-C/VHB160Q.Seq.d/ 1344 0.0 VHA546 (VHA546Q) /CSM/VH/VHA5-B/VHA546Q.Seq.d/ 1342 0.0 VHI672 (VHI672Q) /CSM/VH/VHI6-C/VHI672Q.Seq.d/ 1338 0.0 VHK442 (VHK442Q) /CSM/VH/VHK4-B/VHK442Q.Seq.d/ 1332 0.0 VHH568 (VHH568Q) /CSM/VH/VHH5-C/VHH568Q.Seq.d/ 1328 0.0 VHQ422 (VHQ422Q) /CSM/VH/VHQ4-A/VHQ422Q.Seq.d/ 1291 0.0 AFD388 (AFD388Q) /CSM/AF/AFD3-D/AFD388Q.Seq.d/ 1289 0.0 SHE350 (SHE350Q) /CSM/SH/SHE3-C/SHE350Q.Seq.d/ 1197 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 44 0.003 11 CT009495\|CT009495.13 Mouse DNA sequence from clone RP23-127E21 on chromosome 14. 54 0.011 1 AC158393\|AC158393.2 Mus musculus BAC clone RP23-368G21 from chromosome 14, complete sequence. 54 0.011 1 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 0.035 12 AC177283\|AC177283.1 Strongylocentrotus purpuratus clone R3-1033G9, WORKING DRAFT SEQUENCE, 26 unordered pieces. 52 0.042 1 AC178548\|AC178548.1 Strongylocentrotus purpuratus clone R3-3027F18, WORKING DRAFT SEQUENCE, 9 unordered pieces. 46 0.053 4 AC176485\|AC176485.1 Strongylocentrotus purpuratus clone R3-114M14, WORKING DRAFT SEQUENCE, 16 unordered pieces. 36 0.054 7 CT009740\|CT009740.17 Mouse DNA sequence from clone RP23-9N14 on chromosome 12. 40 0.056 3 AC116977\|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 0.076 15 AL807384\|AL807384.5 Mouse DNA sequence from clone RP23-18F9 on chromosome 2. 36 0.097 2
dna update	2007. 3.27
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,861,063,265
protein update	2009. 6.27
PSORT	psg: 0.65 gvh: 0.23 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.03 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: nuclear 32.0 %: cytoplasmic 24.0 %: mitochondrial 8.0 %: cytoskeletal >> prediction for VHB167 is nuc
5' end seq. ID	VHB167F
5' end seq.	>VHB167F.Seq GTNNTCCTTACAATAATAAAATAATAATAAATAATGGATAATACAGNATTAGTTATTAAT AAAATATGGCAAGATCAAAATATANTAANGGTGGTGGTAGTAGTNACAATGATAATGATA GTGGTAGTGATGATGATAGACATTTCATTTCAAAAAGTTCAATGAAATCCACAGTAAATG TTCAACAACCACAACAAAAATTTCAAGATCTTTATTGTAACTCTAATACATGGTCAGCNG GTAATTATGGAGGAAAAGTANTAAATGCAACTAAAGTNCANCAGAAACANNTATTATCAA TTACAGNAGCATCCAAATTCAAAAGAAGTTAAAATTAAATTACCTTTAAAAGATTGGTTA GAATATTTAAAAGAGAATAGTAATAAAGAATCATCAATTCCATACTCAATTGAAAAATCA TCATATATTGCAAATGTTGAAGATTTTAATGTATCTTTTAAATGTAATTTTGAAATTCAT GTTTTCCCTGAACCAAATTCAAAAGATAATAATAATAATAATAAGAATAATAATTGTGAT CAAGTTCAAATACCATTATTACCATCAACAGTTTGTATAACATCATCATCAATTCAATTC AGTGGTAAAAATGATGATGAATCATGTATTGGTATTTATCAAGATGCTCATAGNNNNNNN NNN
Length of 5' end seq.	663
3' end seq. ID	VHB167Z
3' end seq.	>VHB167Z.Seq NNNNNNNNNNCCATTATTATTATCCTATAAATTCCCTTGTACCAAAGTATGCATTATCAT TCAAAGTTATTAAACATCAAGATTTACCAGTATTGGTTGCATTTTGTCCAAGTGCTCATT TCACTGCTACTTGTAGCTCAGAGGGTGCAATGTTGACCAAATGTTTATTCACTATTCGTA ATGAACAACAACAATATATTCGTGTTACAATTCCACATCAATTTGAAATTTGGAGTACAA TTGTCTCTAAAAAAGCAGTTAAACCAGCCATAGATGATCAAGGTTGTTTAATGATTCCAT TGAATAAATCCTCTGGTACATCCTCTGGTGTTCAAAAAACTTTTAAAGTTGAATTGGTCT ATAAACATACTCGTGATTTCGAATTTTTAAATGTTGGTACTTTTGGTGTAGTTTTCCCAC AAATAGATATTCCAATTAGTACACTATCAATATCTCTTTACCTTCCAACCGATTATAAAT ATGGTGAATTCACTGGAAATGCAAAAGAGATCTTTAGATTTTCAAATGATCAAACCAATG ATGCTGATGATAATGATTTTGAAGGTTTAGGTGCTCCTAATTCATACTCATCAAATGTAA TGCCCCAACAACAAGCTTTCATACCTCAACAACAATCATACATATCAAATGTTGCTCAAC CTCAACTTTCAAGTTTTGATACAAATGAAGATTCAAGTAGTCAAATGATGGGTTTAAAA
Length of 3' end seq.	719
Connected seq. ID	VHB167P
Connected seq.	>VHB167P.Seq GTNNTCCTTACAATAATAAAATAATAATAAATAATGGATAATACAGNATTAGTTATTAAT AAAATATGGCAAGATCAAAATATANTAANGGTGGTGGTAGTAGTNACAATGATAATGATA GTGGTAGTGATGATGATAGACATTTCATTTCAAAAAGTTCAATGAAATCCACAGTAAATG TTCAACAACCACAACAAAAATTTCAAGATCTTTATTGTAACTCTAATACATGGTCAGCNG GTAATTATGGAGGAAAAGTANTAAATGCAACTAAAGTNCANCAGAAACANNTATTATCAA TTACAGNAGCATCCAAATTCAAAAGAAGTTAAAATTAAATTACCTTTAAAAGATTGGTTA GAATATTTAAAAGAGAATAGTAATAAAGAATCATCAATTCCATACTCAATTGAAAAATCA TCATATATTGCAAATGTTGAAGATTTTAATGTATCTTTTAAATGTAATTTTGAAATTCAT GTTTTCCCTGAACCAAATTCAAAAGATAATAATAATAATAATAAGAATAATAATTGTGAT CAAGTTCAAATACCATTATTACCATCAACAGTTTGTATAACATCATCATCAATTCAATTC AGTGGTAAAAATGATGATGAATCATGTATTGGTATTTATCAAGATGCTCATAG------- ---CCATTATTATTATCCTATAAATTCCCTTGTACCAAAGTATGCATTATCATTCAAAGT TATTAAACATCAAGATTTACCAGTATTGGTTGCATTTTGTCCAAGTGCTCATTTCACTGC TACTTGTAGCTCAGAGGGTGCAATGTTGACCAAATGTTTATTCACTATTCGTAATGAACA ACAACAATATATTCGTGTTACAATTCCACATCAATTTGAAATTTGGAGTACAATTGTCTC TAAAAAAGCAGTTAAACCAGCCATAGATGATCAAGGTTGTTTAATGATTCCATTGAATAA ATCCTCTGGTACATCCTCTGGTGTTCAAAAAACTTTTAAAGTTGAATTGGTCTATAAACA TACTCGTGATTTCGAATTTTTAAATGTTGGTACTTTTGGTGTAGTTTTCCCACAAATAGA TATTCCAATTAGTACACTATCAATATCTCTTTACCTTCCAACCGATTATAAATATGGTGA ATTCACTGGAAATGCAAAAGAGATCTTTAGATTTTCAAATGATCAAACCAATGATGCTGA TGATAATGATTTTGAAGGTTTAGGTGCTCCTAATTCATACTCATCAAATGTAATGCCCCA ACAACAAGCTTTCATACCTCAACAACAATCATACATATCAAATGTTGCTCAACCTCAACT TTCAAGTTTTGATACAAATGAAGATTCAAGTAGTCAAATGATGGGTTTAAAA
Length of connected seq.	1362
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas