VHB157
Library VH
(Link to library)
Clone ID VHB157
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11741-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHB157 (VHB157Q) /CSM/VH/VHB1-C/VHB157Q.Seq.d/
CCAAGTACCACTCATTACCAACATCAAATGTGCTAAATTATTCGTCGATTCTTTATCCTA
CATGAAAGGTCCAATGCCAATTGAAAATGTTGATTGGAGAACAAGTAATAAGATCATTCG
TTTACCAGGTTTAGTTGATGTTCATGTTCATCTTAGAGAACCAGGTGCCACTCATAAAGA
AGATTGGGACAGTGGTACAGCAACTGCATTAGCTGGTGGTTTCACCATGGTTGGTGCTAT
GCCAAACACTAATCCAGCCATTATGGATGATGCATCATTTGAACTTTGTAAATCATTGGC
AGCCTCAAAAGCACGTTGTGATTATGGTATTTTCATTGGTGCCACTTTTACCAATACAAC
AACCGCTGGTAAATTCGCATCCGATGCCATGGGTATGAAAATGTATCTCGAAGAAACCTT
TGCTCCACTTCCATTAAAAGATGATATCAACGTTTGGAGAGATCATATTATGAATTGGCC
AGGTACAACACCAATTTGTGTTCATGCTGATGGTAGAAATCTTGCAGCAATTCTCTTATT
AGGTTGGATGTATGATAAACATATGCATGTTTGCCACGTTTCACATAAAGAAGAGATTGA
TATTATTCGTGATGCAAAGAAACGTGGTATGAAATTATCATGTGAAGTTTCACCACATCA
TTTAACCCTTTGTGATAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
QVPLITNIKCAKLFVDSLSYMKGPMPIENVDWRTSNKIIRLPGLVDVHVHLREPGATHKE
DWDSGTATALAGGFTMVGAMPNTNPAIMDDASFELCKSLAASKARCDYGIFIGATFTNTT
TAGKFASDAMGMKMYLEETFAPLPLKDDINVWRDHIMNWPGTTPICVHADGRNLAAILLL
GWMYDKHMHVCHVSHKEEIDIIRDAKKRGMKLSCEVSPHHLTLCD---


Translated Amino Acid sequence (All Frames)
Frame A:
pstthyqhqmc*iirrffilhersnan*kc*lenk**dhsftrfs*cscss*rtrchs*r
rlgqwysnciswwfhhgwcyakh*sshyg*cii*tl*iigslkstl*lwyfhwchfyqyn
nrw*irirchgyenvsrrnlcstsikr*yqrlersyyelaryntnlcsc*w*kscsnsli
rldv**tyaclprft*rrd*yys*cketwyeiim*sfttsfnpl*---


Frame B:
QVPLITNIKCAKLFVDSLSYMKGPMPIENVDWRTSNKIIRLPGLVDVHVHLREPGATHKE
DWDSGTATALAGGFTMVGAMPNTNPAIMDDASFELCKSLAASKARCDYGIFIGATFTNTT
TAGKFASDAMGMKMYLEETFAPLPLKDDINVWRDHIMNWPGTTPICVHADGRNLAAILLL
GWMYDKHMHVCHVSHKEEIDIIRDAKKRGMKLSCEVSPHHLTLCD---


Frame C:
kyhslptsnvlnyssilypt*kvqcqlkmligeqvirsfvyqv*lmfmfilenqvplikk
igtvvqqlh*lvvspwlvlcqtliqplwmmhhlnfvnhwqpqkhvvimvfslvpllpiqq
plvnshpmpwv*kciskkpllhfh*kmistfgeiil*igqvqhqfvfmlmveilqqfsy*
vgcminicmfatfhikkrlilfvmqrnvv*nyhvkfhhii*pfv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB157 (VHB157Q) /CSM/VH/VHB1-C/VHB157Q.Seq.d/ 1342 0.0
VHE292 (VHE292Q) /CSM/VH/VHE2-D/VHE292Q.Seq.d/ 1255 0.0
VHC683 (VHC683Q) /CSM/VH/VHC6-D/VHC683Q.Seq.d/ 979 0.0
VFM214 (VFM214Q) /CSM/VF/VFM2-A/VFM214Q.Seq.d/ 952 0.0
CHN567 (CHN567Q) /CSM/CH/CHN5-C/CHN567Q.Seq.d/ 938 0.0
VHL582 (VHL582Q) /CSM/VH/VHL5-D/VHL582Q.Seq.d/ 842 0.0
CHR693 (CHR693Q) /CSM/CH/CHR6-D/CHR693Q.Seq.d/ 287 1e-76
VFD887 (VFD887Q) /CSM/VF/VFD8-D/VFD887Q.Seq.d/ 178 7e-44
VFE139 (VFE139Q) /CSM/VF/VFE1-B/VFE139Q.Seq.d/ 172 5e-42
VFK538 (VFK538Q) /CSM/VF/VFK5-B/VFK538Q.Seq.d/ 149 7e-35

own update 2002.12.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X14634|X14634.1 D.discoideum PYR1-3B gene fragment for multifunctional enzyme. 1342 0.0 1
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence. 1342 0.0 1
X55433|X55433.1 D.discoideum PYR1-3 gene for glutamine-dependent carbamyl phosphate synthetase. 103 6e-18 1
C63761|C63761.2 Caenorhabditis elegans cDNA clone yk346d9 : 5' end, single read. 56 0.001 1
D37232|D37232.1 C.elegans cDNA clone yk42c3 : 5' end, single read. 54 0.005 1
C65637|C65637.1 C.elegans cDNA clone yk350e6 : 5' end, single read. 54 0.005 1
BJ773744|BJ773744.1 Caenorhabditis elegans cDNA clone:yk1745d01 : 5' end. 54 0.005 1
BJ125291|BJ125291.2 Caenorhabditis elegans cDNA clone:yk1321d04 : 5' end, single read. 54 0.005 1
Z54284|Z54284.1 Caenorhabditis elegans Cosmid D2085. 54 0.005 1
EH557265|EH557265.1 FDR202-P00058-DEPE-F_N22 FDR202 Danio rerio cDNA clone FDR202-P00058-BR_N22 5', mRNA sequence. 52 0.021 1
dna update 2007. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X14634_1(X14634|pid:none) D.discoideum PYR1-3B gene fragment for... 474 e-132
QZDOP3(S02800)pyrimidine synthesis protein PYR1-3 - slime mold ... 474 e-132
BC135128_1(BC135128|pid:none) Xenopus tropicalis hypothetical pr... 257 3e-67
AY751464_1(AY751464|pid:none) Danio rerio carbamoyl-phosphate sy... 254 2e-66
(Q91437) RecName: Full=CAD protein; Includes: RecName: Full=Gl... 248 9e-65
BT025065_1(BT025065|pid:none) Drosophila melanogaster IP15551 fu... 241 1e-62
(P05990) RecName: Full=CAD protein; AltName: Full=Protein rudime... 241 1e-62
D78586_1(D78586|pid:none) Human CAD mRNA for multifunctional pro... 237 2e-61
BC014178_1(BC014178|pid:none) Homo sapiens carbamoyl-phosphate s... 237 3e-61
AB384768_1(AB384768|pid:none) Synthetic construct DNA, clone: pF... 237 3e-61
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.28 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for VHB157 is nuc

5' end seq. ID VHB157F
5' end seq.
>VHB157F.Seq
CCAAGTACCACTCATTACCAACATCAAATGTGCTAAATTATTCGTCGATTCTTTATCCTA
CATGAAAGGTCCAATGCCAATTGAAAATGTTGATTGGAGAACAAGTAATAAGATCATTCG
TTTACCAGGTTTAGTTGATGTTCATGTTCATCTTAGAGAACCAGGTGCCACTCATAAAGA
AGATTGGGACAGTGGTACAGCAACTGCATTAGCTGGTGGTTTCACCATGGTTGGTGCTAT
GCCAAACACTAATCCAGCCATTATGGATGATGCATCATTTGAACTTTGTAAATCATTGGC
AGCCTCAAAAGCACGTTGTGATTATGGTATTTTCATTGGTGCCACTTTTACCAATACAAC
AACCGCTGGTAAATTCGCATCCGATGCCATGGGTATGAAAATGTATCTCGAAGAAACCTT
TGCTCCACTTCCATTAAAAGATGATATCAACGTTTGGAGAGATCATATTATGAATTGGCC
AGGTACAACACCAATTTGTGTTCATGCTGATGGTAGAAATCTTGCAGCAATTCTCTTATT
AGGTTGGATGTATGATAAACATATGCATGTTTGCCACGTTTCACATAAAGAAGAGATTGA
TATTATTCGTGATGCAAAGAAACGTGGTATGAAATTATCATGTGAAGTTTCACCACATCA
TTTAACCCTTTGTGATANNNNNNNNNN
Length of 5' end seq. 687
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -