VHB154
Library VH
(Link to library)
Clone ID VHB154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHB154P
(Link to Original site)
Representative DNA sequence
>VHB154 (VHB154Q) /CSM/VH/VHB1-C/VHB154Q.Seq.d/
AAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGG
ACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCA
CTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTNTGGTGATA
TGANATATATGTCXXXXXXXXXXANTTTANGGTGGTGAANTAAATGCCTCCCCAANTTTT
TTANAACCNATTTNCTTAGTANAAATTNNTGCCCCANAAAACGNTANTGGNGGNANTTAN
TNTGGANTCAATTGTTGTAAAGGNATTGTTATTGGNNAANAANGTTGNATNGGTTNCCCN
TTATTTTTTGTCAAAG
sequence update 2002.10.25
Translated Amino Acid sequence
KKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVXGDM
XYM---

---XXGGEXNASPXFLXPIXLVXIXAPXNXXGGXXXGXNCCKGIVIGXXXXXGXPLFFVK


Translated Amino Acid sequence (All Frames)
Frame A:
kkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*skelvllpikfxvi
*xic---

---xlxw*xkclpxffxtxxlsxnxcpxkrxwxxlxwxqll*rxcywxxxlxxxpxifcq

Frame B:
kkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffnpkswyycr*sxw*y
xiyv---

---XXGGEXNASPXFLXPIXLVXIXAPXNXXGGXXXGXNCCKGIVIGXXXXXGXPLFFVK

Frame C:
KKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVXGDM
XYM---

---fxvvx*mppqxfxnxfx*xkxxpxktxxxxxxxxsivvkxlllxxxvxxvxxyflsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 355 3e-97
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 355 3e-97
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 355 3e-97
VHP874 (VHP874Q) /CSM/modify/h12/F/treated/VHP874Q.Seq.d/ 355 3e-97
VHH874 (VHH874Q) /CSM/VH/VHH8-D/VHH874Q.Seq.d/ 355 3e-97
VHG874 (VHG874Q) /CSM/VH/VHG8-D/VHG874Q.Seq.d/ 355 3e-97
VHQ491 (VHQ491Q) /CSM/VH/VHQ4-D/VHQ491Q.Seq.d/ 355 3e-97
VHQ476 (VHQ476Q) /CSM/VH/VHQ4-D/VHQ476Q.Seq.d/ 355 3e-97
VHQ473 (VHQ473Q) /CSM/VH/VHQ4-D/VHQ473Q.Seq.d/ 355 3e-97
VHQ469 (VHQ469Q) /CSM/VH/VHQ4-C/VHQ469Q.Seq.d/ 355 3e-97

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 353 e-108 2
DY907212|DY907212.1 CHAX1940.b1_G05.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX1940, mRNA sequence. 72 5e-12 2
DY938228|DY938228.1 CHPX5032.b1_O09.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPX5032, mRNA sequence. 72 5e-12 2
DY941362|DY941362.1 CHPX9185.b1_B18.ab1 CHP(XYZ) plains sunflower Helianthus petiolaris cDNA clone CHPX9185, mRNA sequence. 72 5e-12 2
EL476245|EL476245.1 CHUL4181.b1_J14.ab1 CHU(LMS) puzzle sunflower Helianthus paradoxus cDNA clone CHUL4181, mRNA sequence. 72 5e-12 2
EL513430|EL513430.1 CHUX465.b1_A21.ab1 CHU(XYZ) puzzle sunflower Helianthus paradoxus cDNA clone CHUX465, mRNA sequence. 72 5e-12 2
AZ931993|AZ931993.1 474.dhz93a01.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz93a01.s1, DNA sequence. 82 1e-11 1
Y09664|Y09664.1 C.albicans EFT2 gene. 78 2e-10 1
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 2e-10 1
DY905253|DY905253.1 CHAX11663.b1_N11.ab1 CHA(XYZ) common wild sunflower Helianthus annuus cDNA clone CHAX11663, mRNA sequence. 64 1e-09 2
dna update 2007. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 84 1e-15
AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 84 1e-15
BT045031_1(BT045031|pid:none) Salmo salar clone ssal-rgf-510-120... 84 1e-15
BT059038_1(BT059038|pid:none) Salmo salar clone ssal-rgf-521-328... 84 1e-15
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 84 2e-15
AF534908_1(AF534908|pid:none) Tetrahymena thermophila elongation... 84 2e-15
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 84 2e-15
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 83 3e-15
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 83 3e-15
CR859604_1(CR859604|pid:none) Pongo abelii mRNA; cDNA DKFZp468K0... 83 3e-15
protein update 2009. 6.27
PSORT

psg: 0.71 gvh: 0.38 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VHB154 is cyt

5' end seq. ID VHB154F
5' end seq.
>VHB154F.Seq
AAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGG
ACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCA
CTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTNTGGTGATA
TGANATATATGTCNNNNNNNNNN
Length of 5' end seq. 203
3' end seq. ID VHB154Z
3' end seq.
>VHB154Z.Seq
NNNNNNNNNNANTTTANGGTGGTGAANTAAATGCCTCCCCAANTTTTTTANAACCNATTT
NCTTAGTANAAATTNNTGCCCCANAAAACGNTANTGGNGGNANTTANTNTGGANTCAATT
GTTGTAAAGGNATTGTTATTGGNNAANAANGTTGNATNGGTTNCCCNTTATTTTTTGTCA
AAG
Length of 3' end seq. 183
Connected seq. ID VHB154P
Connected seq.
>VHB154P.Seq
AAAAAAAAGTAAAGTACAAAATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGG
ACCGTCGTGAAAATATCAGAAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCA
CTTTATCAGATTCTTTAATCCAAAGAGCTGGTATTATTGCCGATAAAGTTTNTGGTGATA
TGANATATATGTC----------ANTTTANGGTGGTGAANTAAATGCCTCCCCAANTTTT
TTANAACCNATTTNCTTAGTANAAATTNNTGCCCCANAAAACGNTANTGGNGGNANTTAN
TNTGGANTCAATTGTTGTAAAGGNATTGTTATTGGNNAANAANGTTGNATNGGTTNCCCN
TTATTTTTTGTCAAAG
Length of connected seq. 366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -