VHB141
Library VH
(Link to library)
Clone ID VHB141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11418-1|Contig-U13542-1
Original site URL
Representative seq. ID VHB141P
(Link to Original site)
Representative DNA sequence
>VHB141 (VHB141Q) /CSM/VH/VHB1-B/VHB141Q.Seq.d/
AGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATATTCTCTTT
AATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAGTTATCAA
TCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAGATATGCA
ACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTACATTTACA
AATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTCATCAAAT
GGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATATTATGTA
GATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAAATACGCA
TGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATTGATGTTG
GATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTTTATTGTA
TTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTATTTTTCT
TGTCAXXXXXXXXXXCTTGCAATTATTAAATACAAAAATTTTGCTATGCTACTATTCAAT
AGTTTCAAATTTACAAACTTTAGTTATTTCGAATTATTTGCTTTCATGTCCATATTATTC
ACCAACTATTACAGTGTTCAGTTTAACACCATCAACAGGGCAAATTGGAGATATTATCAC
AATTAATGGTCAAAATTTAGATACAAATAGATATGATGTTTATTTCAACATTATTGATGA
CAACAGTAAAATTAAAGCAACAATAACATCAAAGTAATTAGTCAACCATTTAGTACAGAT
ATCATCAATAGATTCTTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATCACC
ATTTATCCATATATCGATAATATTGAAAAAGAAACAATATATTGTGAAATTGAAAAGTAT
TGTCCAAGTTCATCAAAAATTCCATCGATTCCAGAATCAGCAGTAGGTCATCCATGTATT
GATTCAACAGTTTACTCTGAGAATTCTCAGTTTATAAGGTACAAATTTTATTCCAGCCTC
GCTTGCAGATCAAATTAATAATCAATCATTAATTGGTTCACCAAATTCAGTCACGTTTAA
TAATGTTTTATCTTCATCATGGAAATGGATTAACTCAACACATGTAAAAGCCATCGTACA
AAAAGGTATTGGAGCAATCCTTACAATTGTAAATGTTGGAAGCCAAAGTACTGAAACGAG
TCCATATCCCGTAATTTTTTATAAACAACCNAATTAGATAATAAAAAATA
sequence update 2002.10.25
Translated Amino Acid sequence
RLTSTSHQITNDDHTKDILFNLFGNVNRCGTFGTSTLSYQSCILTVANKAINYKLDSRYA
TSPKSVMVGSLSQPRTITFTNDVITIIYSSTTGFTECSSNGNKYSSKYILICDPFTEYYV
DKFTLESQCIYQIKVYTKYACPTLRLFKQTQYYDLSPLMLDSARNYTTSHFTDGSEFFIV
FNIGNKAQMCSDALNDYYFSC---

---LQLLNTKILLCYYSIVSNLQTLVISNYLLSCPYYSPTITVFSLTPSTGQIGDIITIN
GQNLDTNRYDVYFNIIDDNSKIKATITSK*lvnhlvqissidslllvktivl**pispfi
hisiilkkkqyivklksivqvhqkfhrfqnqq*vihvliqqftlrilsl*gtnfipasla
dqinnqsligspnsvtfnnvlssswkwinsthvkaivqkgigailtivnvgsqstetspy
pvifykqpn*iikn


Translated Amino Acid sequence (All Frames)
Frame A:
RLTSTSHQITNDDHTKDILFNLFGNVNRCGTFGTSTLSYQSCILTVANKAINYKLDSRYA
TSPKSVMVGSLSQPRTITFTNDVITIIYSSTTGFTECSSNGNKYSSKYILICDPFTEYYV
DKFTLESQCIYQIKVYTKYACPTLRLFKQTQYYDLSPLMLDSARNYTTSHFTDGSEFFIV
FNIGNKAQMCSDALNDYYFSC---

---laiikyknfamllfnsfkftnfsyfelfafmsilftnyysvqfntinranwryyhn*
wskfryk*i*clfqhy**qq*n*snnnikvisqpfstdiinrffvigqnhrslitnitiy
pyidnieketiyceiekycpssskipsipesavghpcidstvysensqfirykfysslac
rsn**siinwftkfshv**cfifimemd*lntckshrtkrywsnpynckcwkpky*nesi
srnfl*ttxldnkk

Frame B:
d*qalhtkspmmtiqkifsliysem*idvvlsvhqh*vinhvf*qllikrsiin*iqdmq
hhqnqlw*dlsvnqeqlhlqmm**p*fivqqlvsqnahqmvtnihqsif*fvihsqnim*
inlh*nhnvfikskfilnthvqhyvysnkhnimifrh*cwiqqeiiqqvtlqtdlsflly
silvikhkcvamh*miiiflv---

---LQLLNTKILLCYYSIVSNLQTLVISNYLLSCPYYSPTITVFSLTPSTGQIGDIITIN
GQNLDTNRYDVYFNIIDDNSKIKATITSK*lvnhlvqissidslllvktivl**pispfi
hisiilkkkqyivklksivqvhqkfhrfqnqq*vihvliqqftlrilsl*gtnfipasla
dqinnqsligspnsvtfnnvlssswkwinsthvkaivqkgigailtivnvgsqstetspy
pvifykqpn*iikn

Frame C:
inkhftpnhq**pykrysl*firkck*mwyfryiniklsimyfnsc**sdql*trfkicn
itkisygrisqstknnyiyk*cnnhnl*fnnwfhrmlikw*qifikvyfnl*sihrilcr
*iyiritmylsnqsly*irmsnitfiqtntil*sfaidvgfskklynkslyrri*vfyci
qyw**stnv*rcik*llffls---

---cny*iqkfcyatiq*fqiykl*lfriicfhvhiihqllqcsv*hhqqgkleilsqlm
vki*iqidmmfistllmttvklkqq*hqsn*sti*yryhq*ilcywskpsffnnqyhhls
iyr*y*krnnil*n*kvlskfiknsidsrissrssmy*fnsll*efsvykvqilfqprlq
ikliinh*lvhqiqsrlimfylhhgngltqhm*kpsykkvleqslql*mleakvlkrvhi
p*ffinnxir**ki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHB141 (VHB141Q) /CSM/VH/VHB1-B/VHB141Q.Seq.d/ 2650 0.0
VHA774 (VHA774Q) /CSM/VH/VHA7-D/VHA774Q.Seq.d/ 1283 0.0
VHL279 (VHL279Q) /CSM/VH/VHL2-D/VHL279Q.Seq.d/ 1199 0.0
AHQ549 (AHQ549Q) /CSM/AH/AHQ5-C/AHQ549Q.Seq.d/ 1199 0.0
AHJ355 (AHJ355Q) /CSM/AH/AHJ3-C/AHJ355Q.Seq.d/ 1189 0.0
VHB491 (VHB491Q) /CSM/VH/VHB4-D/VHB491Q.Seq.d/ 1039 0.0
VHE714 (VHE714Q) /CSM/VH/VHE7-A/VHE714Q.Seq.d/ 1021 0.0
VHA689 (VHA689Q) /CSM/VH/VHA6-D/VHA689Q.Seq.d/ 1017 0.0
VHN859 (VHN859Q) /CSM/VH/VHN8-C/VHN859Q.Seq.d/ 963 0.0
VHH151 (VHH151Q) /CSM/VH/VHH1-C/VHH151Q.Seq.d/ 858 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC177727|AC177727.1 Strongylocentrotus purpuratus clone R3-1008O8, WORKING DRAFT SEQUENCE, 23 unordered pieces. 46 0.030 7
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome. 36 0.070 24
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 0.13 10
AY673996|AY673996.1 Gracilaria tenuistipitata var. liui chloroplast, complete genome. 38 0.41 6
EJ140887|EJ140887.1 1092343650443 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001418143 5', genomic survey sequence. 48 0.65 1
CC864166|CC864166.1 NDL.30E1.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-30E1, genomic survey sequence. 48 0.65 1
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 36 0.70 12
AC091203|AC091203.3 Drosophila melanogaster 3L BAC RP98-48N8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence. 36 1.1 6
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome. 36 1.6 16
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 36 1.7 13
dna update 2007. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY454940_1(AY454940|pid:none) Gorilla gorilla clone 22 olfactory... 39 0.44
AX466639_1(AX466639|pid:none) Sequence 121 from Patent WO0212343. 39 0.44
(Q8NGS5) RecName: Full=Olfactory receptor 13C4; AltName: Full=Ol... 37 1.3
AF399602_1(AF399602|pid:none) Homo sapiens clone OR13C4 olfactor... 37 1.3
AX466629_1(AX466629|pid:none) Sequence 111 from Patent WO0212343. 37 1.3
AF339159_1(AF339159|pid:none) Macropus rufogriseus mannose-6-pho... 37 1.3
AL772397_1(AL772397|pid:none) Mouse DNA sequence from clone RP23... 37 1.3
AF091565_1(AF091565|pid:none) Rattus norvegicus isolate QFG-TN1 ... 37 1.3
BC113135_1(BC113135|pid:none) Mus musculus olfactory receptor 15... 37 1.7
AB263571_1(AB263571|pid:none) Monodelphis domestica opor63 gene ... 37 2.2
protein update 2009. 6.27
PSORT

psg: 0.78 gvh: 0.46 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VHB141 is cyt

5' end seq. ID VHB141F
5' end seq.
>VHB141F.Seq
AGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATATTCTCTTT
AATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAGTTATCAA
TCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAGATATGCA
ACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTACATTTACA
AATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTCATCAAAT
GGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATATTATGTA
GATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAAATACGCA
TGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATTGATGTTG
GATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTTTATTGTA
TTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTATTTTTCT
TGTCANNNNNNNNNN
Length of 5' end seq. 615
3' end seq. ID VHB141Z
3' end seq.
>VHB141Z.Seq
NNNNNNNNNNCTTGCAATTATTAAATACAAAAATTTTGCTATGCTACTATTCAATAGTTT
CAAATTTACAAACTTTAGTTATTTCGAATTATTTGCTTTCATGTCCATATTATTCACCAA
CTATTACAGTGTTCAGTTTAACACCATCAACAGGGCAAATTGGAGATATTATCACAATTA
ATGGTCAAAATTTAGATACAAATAGATATGATGTTTATTTCAACATTATTGATGACAACA
GTAAAATTAAAGCAACAATAACATCAAAGTAATTAGTCAACCATTTAGTACAGATATCAT
CAATAGATTCTTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATCACCATTTA
TCCATATATCGATAATATTGAAAAAGAAACAATATATTGTGAAATTGAAAAGTATTGTCC
AAGTTCATCAAAAATTCCATCGATTCCAGAATCAGCAGTAGGTCATCCATGTATTGATTC
AACAGTTTACTCTGAGAATTCTCAGTTTATAAGGTACAAATTTTATTCCAGCCTCGCTTG
CAGATCAAATTAATAATCAATCATTAATTGGTTCACCAAATTCAGTCACGTTTAATAATG
TTTTATCTTCATCATGGAAATGGATTAACTCAACACATGTAAAAGCCATCGTACAAAAAG
GTATTGGAGCAATCCTTACAATTGTAAATGTTGGAAGCCAAAGTACTGAAACGAGTCCAT
ATCCCGTAATTTTTTATAAACAACCNAATTAGATAATAAAAAATA
Length of 3' end seq. 765
Connected seq. ID VHB141P
Connected seq.
>VHB141P.Seq
AGATTAACAAGCACTTCACACCAAATCACCAATGATGACCATACAAAAGATATTCTCTTT
AATTTATTCGGAAATGTAAATAGATGTGGTACTTTCGGTACATCAACATTAAGTTATCAA
TCATGTATTTTAACAGTTGCTAATAAAGCGATCAATTATAAACTAGATTCAAGATATGCA
ACATCACCAAAATCAGTTATGGTAGGATCTCTCAGTCAACCAAGAACAATTACATTTACA
AATGATGTAATAACCATAATTTATAGTTCAACAACTGGTTTCACAGAATGCTCATCAAAT
GGTAACAAATATTCATCAAAGTATATTTTAATTTGTGATCCATTCACAGAATATTATGTA
GATAAATTTACATTAGAATCACAATGTATTTATCAAATCAAAGTTTATACTAAATACGCA
TGTCCAACATTACGTTTATTCAAACAAACACAATATTATGATCTTTCGCCATTGATGTTG
GATTCAGCAAGAAATTATACAACAAGTCACTTTACAGACGGATCTGAGTTTTTTATTGTA
TTCAATATTGGTAATAAAGCACAAATGTGTAGCGATGCATTAAATGATTATTATTTTTCT
TGTCA----------CTTGCAATTATTAAATACAAAAATTTTGCTATGCTACTATTCAAT
AGTTTCAAATTTACAAACTTTAGTTATTTCGAATTATTTGCTTTCATGTCCATATTATTC
ACCAACTATTACAGTGTTCAGTTTAACACCATCAACAGGGCAAATTGGAGATATTATCAC
AATTAATGGTCAAAATTTAGATACAAATAGATATGATGTTTATTTCAACATTATTGATGA
CAACAGTAAAATTAAAGCAACAATAACATCAAAGTAATTAGTCAACCATTTAGTACAGAT
ATCATCAATAGATTCTTTGTTATTGGTCAAAACCATCGTTCTTTAATAACCAATATCACC
ATTTATCCATATATCGATAATATTGAAAAAGAAACAATATATTGTGAAATTGAAAAGTAT
TGTCCAAGTTCATCAAAAATTCCATCGATTCCAGAATCAGCAGTAGGTCATCCATGTATT
GATTCAACAGTTTACTCTGAGAATTCTCAGTTTATAAGGTACAAATTTTATTCCAGCCTC
GCTTGCAGATCAAATTAATAATCAATCATTAATTGGTTCACCAAATTCAGTCACGTTTAA
TAATGTTTTATCTTCATCATGGAAATGGATTAACTCAACACATGTAAAAGCCATCGTACA
AAAAGGTATTGGAGCAATCCTTACAATTGTAAATGTTGGAAGCCAAAGTACTGAAACGAG
TCCATATCCCGTAATTTTTTATAAACAACCNAATTAGATAATAAAAAATA
Length of connected seq. 1360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -