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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHB125
Library VH
(Link to library)
Clone ID VHB125
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12673-1
Original site URL
Representative seq. ID VHB125P
(Link to Original site)
Representative DNA sequence 
>VHB125 (VHB125Q) /CSM/VH/VHB1-B/VHB125Q.Seq.d/
CACTGTTGGCCTACTGGNAAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAAT
TTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTA
ATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTT
TATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCC
CATCATATTANTGTTGCCTGTTGGTGGGGTTCAAAANTNTGNCTTGGTCAAACATCTATT
GAAAGNGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTXXXXXXXXXXTTTGGTTTCA
CAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTG
GTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGAC
AAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCA
CTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTA
TTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAA
ATATTGATGCCTCAATCAAATTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCG
CCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATA
CATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTA
TGATCGATTCAATGATCACCAGATTTGGTAAAGATGATTCTGATATGTTATAAAGCTTTT
TATTAAATTTCCAAAAAATAAAATAATATAAAATAAAATAAAATAAAATAAAATAAAATA
TAAAATAAAATAAAATATAAAATAAAATAAAATATAAAATAAATAAATATTATCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
HCWPTGKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPV
YRLNARESFNLLTEKEQLYAHHIXVACWWGSKXXLGQTSIEXGPIFNLFQNLF---

---FGFTDPKKAEDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTF
LRSGIVTLDKTADDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTH
VNEEFLAIRDIVLAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDS
DML*sfllnfqkik*ykik*nkik*nik*nki*nkikykinkyyl
Translated Amino Acid sequence (All Frames) 
Frame A:
HCWPTGKFNSLLILNNNNNNFYNNKNNNSFNKRFYSTNNLIMSVPSSVIENHLVPKEIPV
YRLNARESFNLLTEKEQLYAHHIXVACWWGSKXXLGQTSIEXGPIFNLFQNLF---

---FGFTDPKKAEDVYYVNWLIMARAGVCALEFYSPPSEGAPGKWRQAHMQARYCILTTF
LRSGIVTLDKTADDVIVKLDKSKIRGIGVKAVGDFLNRLMVYKATANIDASIKLFDEYTH
VNEEFLAIRDIVLAKKKPRKVFVQAHTYLNSNGKVCLQDFDDSTQGMIDSMITRFGKDDS
DML*sfllnfqkik*ykik*nkik*nik*nki*nkikykinkyyl

Frame B:
tvgllxnlipf*y*titiiisitikiiivlikdfiqqii**cqyhhq**riilyqrrfqf
iv*mlvnhsiy*qrknnsmpiilxlpvggvqxxxlvkhllkxvqslisfkifs---

---lvsqiqrklkmstmsig*lwhvlvsvhwnfivhqvkvhqvngdklickpdivf*qhs
yvlvlsl*trlptm*lsnlikvklevlvlkllvissid*wftkqlqilmpqsnysmnilm
smknssplei*fwlkrnqerylfklihisiqmvkfvfkilmtqlkv*siq*spdlvkmil
icykafy*iskk*nnik*nkik*nki*nkikykik*nik*inii

Frame C:
llaywxi*fpfdikq*q**fl*q*k***f**kilfnk*fnnvstiisnressctkgdssl
sfkcs*iiqsinrerttlcpsyxccllvgfkxxxwsniy*kxsnl*slsksf---

---wfhrskes*rcllcqlvdygtcwclcigil*stk*rctr*metssyasqilyfnnil
tfwychfrqdcrrcncqt**k*n*rywc*scw*fpq*inglqsncky*clnqiir*iysc
q*riprh*rysfg*ketkkgicsssyisqfkw*slssrf**lnsrydrfndhqiw*r*f*
yviklfikfpknkii*nkik*nkikykik*nik*nki*nk*ils
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA874 (VHA874Q) /CSM/VH/VHA8-D/VHA874Q.Seq.d/                       1114   0.0
VHP234 (VHP234Q) /CSM/VH/VHP2-B/VHP234Q.Seq.d/                       1114   0.0
VHO760 (VHO760Q) /CSM/VH/VHO7-C/VHO760Q.Seq.d/                       1114   0.0
VHO670 (VHO670Q) /CSM/VH/VHO6-C/VHO670Q.Seq.d/                       1114   0.0
VHN272 (VHN272Q) /CSM/VH/VHN2-C/VHN272Q.Seq.d/                       1114   0.0
VHN114 (VHN114Q) /CSM/VH/VHN1-A/VHN114Q.Seq.d/                       1114   0.0
VHK861 (VHK861Q) /CSM/VH/VHK8-C/VHK861Q.Seq.d/                       1114   0.0
VHJ529 (VHJ529Q) /CSM/VH/VHJ5-B/VHJ529Q.Seq.d/                       1114   0.0
VHJ114 (VHJ114Q) /CSM/VH/VHJ1-A/VHJ114Q.Seq.d/                       1114   0.0
VHI866 (VHI866Q) /CSM/VH/VHI8-C/VHI866Q.Seq.d/                       1114   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.  1114   0.0    1
CJ448364|CJ448364.1 Macaca fascicularis mRNA, clone: QflA-13735, 5' end, expressed in brain frontal lobe.    36   1.6    2
CJ478135|CJ478135.1 Macaca fascicularis mRNA, clone: QtrA-13141, 5' end, expressed in brain temporal lobe.    36   1.6    2
AC145080|AC145080.3 Mus musculus chromosome 7 clone RP24-361O2 map 7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    46   1.9    1
DU706601|DU706601.1 Bst039128 lambda03 Boechera stricta genomic clone SAD-EX-57-T7_N07, genomic survey sequence.    46   1.9    1
BA000033|BA000033.2 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2.    46   1.9    1
BX571857|BX571857.1 Staphylococcus aureus strain MSSA476, complete genome.    46   1.9    1
AC132599|AC132599.3 Mus musculus BAC clone RP24-131O15 from 3, complete sequence.    46   1.9    1
AC129311|AC129311.6 Mus musculus BAC clone RP24-404P10 from chromosome 3, complete sequence.    46   1.9    1
CJ484638|CJ484638.1 Macaca fascicularis mRNA, clone: QtsA-12186, 5' end, expressed in testis.    34   6.0    2
dna update 2007. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A7RZW4) RecName: Full=Dipeptidyl-peptidase 3;          EC=3.4.1...   150   7e-35
X91067_8(X91067|pid:none) S.cerevisiae DNA from chromosome XV (c...   139   2e-31
(Q08225) RecName: Full=Probable dipeptidyl-peptidase 3;         ...   139   2e-31
BC043905_1(BC043905|pid:none) Xenopus laevis dipeptidylpeptidase...   132   2e-29
AM494942_94(AM494942|pid:none) Leishmania braziliensis chromosom...   131   3e-29
BC075771_1(BC075771|pid:none) Danio rerio dipeptidylpeptidase 3,...   130   6e-29
BC077244_1(BC077244|pid:none) Xenopus laevis dipeptidylpeptidase...   130   9e-29
AM502223_97(AM502223|pid:none) Leishmania infantum chromosome 5.      129   2e-28
AK150126_1(AK150126|pid:none) Mus musculus bone marrow macrophag...   128   3e-28
AK031020_1(AK031020|pid:none) Mus musculus adult male thymus cDN...   128   3e-28
protein update 2009. 6.27
PSORT 

 psg: 0.82  gvh: 0.27  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.05
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 28.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for VHB125 is cyt
5' end seq. ID VHB125F
5' end seq. 
>VHB125F.Seq
CACTGTTGGCCTACTGGNAAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAAT
TTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTA
ATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTT
TATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCC
CATCATATTANTGTTGCCTGTTGGTGGGGTTCAAAANTNTGNCTTGGTCAAACATCTATT
GAAAGNGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCTNNNNNNNNNN
Length of 5' end seq. 350
3' end seq. ID VHB125Z
3' end seq. 
>VHB125Z.Seq
NNNNNNNNNNTTTGGTTTCACAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTG
GTTGATTATGGCACGTGCTGGTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGG
TGCACCAGGTAAATGGAGACAAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATT
CTTACGTTCTGGTATTGTCACTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGA
TAAAAGTAAAATTAGAGGTATTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAAT
GGTTTACAAAGCAACTGCAAATATTGATGCCTCAATCAAATTATTCGATGAATATACTCA
TGTCAATGAAGAATTCCTCGCCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAA
GGTATTTGTTCAAGCTCATACATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTT
TGATGACTCAACTCAAGGTATGATCGATTCAATGATCACCAGATTTGGTAAAGATGATTC
TGATATGTTATAAAGCTTTTTATTAAATTTCCAAAAAATAAAATAATATAAAATAAAATA
AAATAAAATAAAATAAAATATAAAATAAAATAAAATATAAAATAAAATAAAATATAAAAT
AAATAAATATTATCTT
Length of 3' end seq. 676
Connected seq. ID VHB125P
Connected seq. 
>VHB125P.Seq
CACTGTTGGCCTACTGGNAAATTTAATTCCCTTTTGATATTAAACAATAACAATAATAAT
TTCTATAACAATAAAAATAATAATAGTTTTAATAAAAGATTTTATTCAACAAATAATTTA
ATAATGTCAGTACCATCATCAGTAATAGAGAATCATCTTGTACCAAAGGAGATTCCAGTT
TATCGTTTAAATGCTCGTGAATCATTCAATCTATTAACAGAGAAAGAACAACTCTATGCC
CATCATATTANTGTTGCCTGTTGGTGGGGTTCAAAANTNTGNCTTGGTCAAACATCTATT
GAAAGNGGTCCAATCTTTAATCTCTTTCAAAATCTTTTCT----------TTTGGTTTCA
CAGATCCAAAGAAAGCTGAAGATGTCTACTATGTCAATTGGTTGATTATGGCACGTGCTG
GTGTCTGTGCATTGGAATTTTATAGTCCACCAAGTGAAGGTGCACCAGGTAAATGGAGAC
AAGCTCATATGCAAGCCAGATATTGTATTTTAACAACATTCTTACGTTCTGGTATTGTCA
CTTTAGACAAGACTGCCGACGATGTAATTGTCAAACTTGATAAAAGTAAAATTAGAGGTA
TTGGTGTTAAAGCTGTTGGTGATTTCCTCAATAGATTAATGGTTTACAAAGCAACTGCAA
ATATTGATGCCTCAATCAAATTATTCGATGAATATACTCATGTCAATGAAGAATTCCTCG
CCATTAGAGATATAGTTTTGGCTAAAAAGAAACCAAGAAAGGTATTTGTTCAAGCTCATA
CATATCTCAATTCAAATGGTAAAGTTTGTCTTCAAGATTTTGATGACTCAACTCAAGGTA
TGATCGATTCAATGATCACCAGATTTGGTAAAGATGATTCTGATATGTTATAAAGCTTTT
TATTAAATTTCCAAAAAATAAAATAATATAAAATAAAATAAAATAAAATAAAATAAAATA
TAAAATAAAATAAAATATAAAATAAAATAAAATATAAAATAAATAAATATTATCTT
Length of connected seq. 1006
Full length Seq ID -
Full length Seq. -
Length of full length seq. -