>VHA888 (VHA888Q) /CSM/VH/VHA8-D/VHA888Q.Seq.d/
XXXXXXXXXXTTGGCCGATGCAGAGGATGAAAATCGTTTCTATCCAAGAATTGAAATCAC
CAAAACTAGCAATTTCAATGAACTCTCTGATGATATCAAGACCATTCTCCATCGTTTATA
CATCTCTTACTACTATGAAAGACAAGAGGAACTTTGGGCACAAATTGCTCTTCAACGTTT
ACCTTTGATTAAAGGTTGCACAAAGATGTTGGTTTGTGGTGAAGATTTAGGTATGGTTCC
AAAATGTGTTGAGCCTGTACTCAACGATTTAGGTATCCTTGGTTTAAGAATTCAACGTAT
GCCTTCCGATTCAAATAAAGATTTCTATCATCCAAATGAATATTCCTATCTCACTGTAAA
TACTACCTCATCTCATGATATGAGTACCTTGAGAGATTGGTGGGAAGAAGATAGAGCTCG
TTCTCAAGTTTTCTACAATAAAATCTTGGGAATGTTTGGTGATGCTCCTTACTTTTGTGA
ACCTTATGTTAGTGAGGCCGTTATCACTCAACATTTACATTCTCAATCTATGATTTCAAT
CTTTCCAATTCAAGATTGGTTCGGTATCTCTAGTGAATATGGTAGCAGAGATCCAAAAGA
AGAAAAGATTAATGAACCTTCAAATCCAATGCATTATTGGAGATATCGTATGCATATCAA
TTTAGAAACCTTGGTTAACGATCATGATTTCAGTAAAAATATTCAAAGATTAATTTTATC
TTCAAATCGTAATTTAGATTAAACAATCTAAAAAAAAATAAAAAAAAATAAAANAT

---ADAEDENRFYPRIEITKTSNFNELSDDIKTILHRLYISYYYERQEELWAQIALQRLP
LIKGCTKMLVCGEDLGMVPKCVEPVLNDLGILGLRIQRMPSDSNKDFYHPNEYSYLTVNT
TSSHDMSTLRDWWEEDRARSQVFYNKILGMFGDAPYFCEPYVSEAVITQHLHSQSMISIF
PIQDWFGISSEYGSRDPKEEKINEPSNPMHYWRYRMHINLETLVNDHDFSKNIQRLILSS
NRNLD*ti*kkikknkx

Frame A:
---wpmqrmkivsiqelkspklaismnslmisrpfsivytslttmkdkrnfghkllfnvy
l*lkvaqrcwfvvki*vwfqnvlslysti*vslv*efnvclpiqikisiiqmnipisl*i
lphlmi*vp*eiggkkielvlkfstiksweclvmlltfvnlmlvrplslniyilnl*fqs
fqfkigsvslvnmvaeiqkkkrlmnlqiqciigdivcisi*kpwltimisvkifkd*fyl
qivi*ikqskkk*kkikx


Frame B:
---grcrg*ksflskn*nhqn*qfq*tl**yqdhspsfihllll*ktrgtlgtncsstft
fd*rlhkdvglw*rfrygskmc*actqrfrypwfknstyafrfk*rflssk*iflshcky
ylis*yeylerlvgrr*ssfssflq*nlgnvw*cslll*tlc**gryhstftfsiydfnl
snsrlvryl**iw*qrskrrkd**tfksnalleisyayqfrnlg*rs*fq*kyskinfif
ks*frlnnlkknkkk*x


Frame C:
---ADAEDENRFYPRIEITKTSNFNELSDDIKTILHRLYISYYYERQEELWAQIALQRLP
LIKGCTKMLVCGEDLGMVPKCVEPVLNDLGILGLRIQRMPSDSNKDFYHPNEYSYLTVNT
TSSHDMSTLRDWWEEDRARSQVFYNKILGMFGDAPYFCEPYVSEAVITQHLHSQSMISIF
PIQDWFGISSEYGSRDPKEEKINEPSNPMHYWRYRMHINLETLVNDHDFSKNIQRLILSS
NRNLD*ti*kkikknkx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA888 (VHA888Q) /CSM/VH/VHA8-D/VHA888Q.Seq.d/                       1465   0.0
VHK286 (VHK286Q) /CSM/VH/VHK2-D/VHK286Q.Seq.d/                       1388   0.0
VHM111 (VHM111Q) /CSM/VH/VHM1-A/VHM111Q.Seq.d/                       1378   0.0
CHQ783 (CHQ783Q) /CSM/CH/CHQ7-D/CHQ783Q.Seq.d/                       1352   0.0
VHK364 (VHK364Q) /CSM/VH/VHK3-C/VHK364Q.Seq.d/                       1344   0.0
VHL717 (VHL717Q) /CSM/VH/VHL7-A/VHL717Q.Seq.d/                       1287   0.0
AHQ602 (AHQ602Q) /CSM/AH/AHQ6-A/AHQ602Q.Seq.d/                       1249   0.0
AHF860 (AHF860Q) /CSM/AH/AHF8-C/AHF860Q.Seq.d/                       1249   0.0
VHN809 (VHN809Q) /CSM/VH/VHN8-A/VHN809Q.Seq.d/                       1243   0.0
AHK568 (AHK568Q) /CSM/AH/AHK5-C/AHK568Q.Seq.d/                       1078   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CX093654|CX093654.1 EHAFO18TR E. histolytica Normalized cDNA library Entamoeba histolytica cDNA, mRNA sequence.    50   2e-06  3
AE006302|AE006302.1 Lactococcus lactis subsp. lactis IL1403 section 64 of 218 of the complete genome.    54   1e-04  3
BQ411087|BQ411087.1 GA__Ed0036F04f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036F04f, mRNA sequence.    34   0.24   3
BQ410988|BQ410988.1 GA__Ed0036A01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036A01f, mRNA sequence.    34   0.25   3
CC832281|CC832281.1 ZMMBBb0184B11.f ZMMBBb Zea mays subsp. mays genomic clone ZMMBBb0184B11 5', genomic survey sequence.    48   0.37   1
CO083237|CO083237.1 GR__Ea48D15.r GR__Ea Gossypium raimondii cDNA clone GR__Ea48D15 3', mRNA sequence.    34   0.43   3
DR996787| AT5g36790/f5h8_20, mRNA sequence.    34   1.0    2
CV632073|CV632073.1 Mdfrt3098d19.y1 Mdfrt Malus x domestica cDNA clone Mdfrt3098d19 5' similar to TR:O74320 O74320 4-NITROPHENYLPHOSPHATASE. ;, mRNA sequence.    34   1.0    2
CV627953|CV627953.1 Mdfrt3107k12.y1 Mdfrt Malus x domestica cDNA clone Mdfrt3107k12 5' similar to SW:PNPP_YEAST P19881 4-NITROPHENYLPHOSPHATASE ;, mRNA sequence.    34   1.0    2
EB123079|EB123079.1 020815AARA010182HT (AARA) Royal Gala partially senescing leaf Malus x domestica cDNA clone AARA010182, mRNA sequence.    34   1.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY081315_1(AY081315|pid:none) Arabidopsis thaliana 4-alpha-gluca...   258   1e-67
BT055804_1(BT055804|pid:none) Zea mays full-length cDNA clone ZM...   257   3e-67
FJ664262_1(FJ664262|pid:none) Annona cherimola disproportionatin...   255   1e-66
AY510449_1(AY510449|pid:none) Solanum tuberosum 4-alpha-glucanot...   243   4e-63
AP006841_3821(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...   235   1e-60
CR626927_3520(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...   234   2e-60
AE005176_696(AE005176|pid:none) Lactococcus lactis subsp. lactis...   234   2e-60
CP001577_181(CP001577|pid:none) Micromonas sp. RCC299 chromosome...   226   5e-58
CP000139_1346(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...   213   4e-54
CP000425_648(CP000425|pid:none) Lactococcus lactis subsp. cremor...   212   9e-54

 psg: 0.75  gvh: 0.50  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VHA888 is cyt

>VHA888Z.Seq
NNNNNNNNNNTTGGCCGATGCAGAGGATGAAAATCGTTTCTATCCAAGAATTGAAATCAC
CAAAACTAGCAATTTCAATGAACTCTCTGATGATATCAAGACCATTCTCCATCGTTTATA
CATCTCTTACTACTATGAAAGACAAGAGGAACTTTGGGCACAAATTGCTCTTCAACGTTT
ACCTTTGATTAAAGGTTGCACAAAGATGTTGGTTTGTGGTGAAGATTTAGGTATGGTTCC
AAAATGTGTTGAGCCTGTACTCAACGATTTAGGTATCCTTGGTTTAAGAATTCAACGTAT
GCCTTCCGATTCAAATAAAGATTTCTATCATCCAAATGAATATTCCTATCTCACTGTAAA
TACTACCTCATCTCATGATATGAGTACCTTGAGAGATTGGTGGGAAGAAGATAGAGCTCG
TTCTCAAGTTTTCTACAATAAAATCTTGGGAATGTTTGGTGATGCTCCTTACTTTTGTGA
ACCTTATGTTAGTGAGGCCGTTATCACTCAACATTTACATTCTCAATCTATGATTTCAAT
CTTTCCAATTCAAGATTGGTTCGGTATCTCTAGTGAATATGGTAGCAGAGATCCAAAAGA
AGAAAAGATTAATGAACCTTCAAATCCAATGCATTATTGGAGATATCGTATGCATATCAA
TTTAGAAACCTTGGTTAACGATCATGATTTCAGTAAAAATATTCAAAGATTAATTTTATC
TTCAAATCGTAATTTAGATTAAACAATCTAAAAAAAAATAAAAAAAAATAAAANAT