>VHA882 (VHA882Q) /CSM/VH/VHA8-D/VHA882Q.Seq.d/
AAATTTAATTGTTTGCGTATAATATCAATATTATTATTATTTTTTTTTTTNCAANATTTT
AATTNATTGGTTTTTTTAANANATTTTTTTTTTTTTTTNCCANNCCCCGGCCCNTNAAAA
AANCCCCTTTTTTTTTTTAAAAAAANNTTNAAAAAAAAAXXXXXXXXXX

KFNCLRIISILLLFFFXQXFNXLVFLXXFFFFXPXPGPXKXPLFFFKKXXKK---

Frame A:
KFNCLRIISILLLFFFXQXFNXLVFLXXFFFFXPXPGPXKXPLFFFKKXXKK---


Frame B:
nlivcv*yqyyyyfffxxilixwff*xiffffxxxpaxxkxpffflkkxxkk---


Frame C:
i*lfayniniiiifffxxf*xigffxxfffffxxprpxkkxpfff*kxxxkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA882 (VHA882Q) /CSM/VH/VHA8-D/VHA882Q.Seq.d/                         78   5e-14
VSG770 (VSG770Q) /CSM/VS/VSG7-C/VSG770Q.Seq.d/                         38   0.039
SHC325 (SHC325Q) /CSM/SH/SHC3-B/SHC325Q.Seq.d/                         38   0.039
CHN758 (CHN758Q) /CSM/CH/CHN7-C/CHN758Q.Seq.d/                         36   0.15
VSJ530 (VSJ530Q) /CSM/VS/VSJ5-B/VSJ530Q.Seq.d/                         34   0.61
VSI412 (VSI412Q) /CSM/VS/VSI4-A/VSI412Q.Seq.d/                         34   0.61
VSI238 (VSI238Q) /CSM/VS/VSI2-B/VSI238Q.Seq.d/                         34   0.61
VSI190 (VSI190Q) /CSM/VS/VSI1-D/VSI190Q.Seq.d/                         34   0.61
VSC889 (VSC889Q) /CSM/VS/VSC8-D/VSC889Q.Seq.d/                         34   0.61
VSC464 (VSC464Q) /CSM/VS/VSC4-C/VSC464Q.Seq.d/                         34   0.61

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    78   8e-11  1
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    44   1.1    1
BH765183|BH765183.1 BMBAC354B03T7_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence.    44   1.1    1
AF031627|AF031627.1 Plasmodium falciparum long-chain acyl-CoA synthetase gene, complete cds.    44   1.1    1
AF007828|AF007828.2 Plasmodium falciparum acyl CoA synthetase (ACOAL) gene, Acoal 2 allele, complete cds.    44   1.1    1
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    44   1.1    1
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    44   1.1    1
AB053516|AB053516.1 Carabus stjernvalli mitochondrial gene for NADH dehydrogenase subunit 5, partial cds, isolate:25-98P36.    44   1.1    1
AB053515|AB053515.1 Carabus stjernvalli mitochondrial gene for NADH dehydrogenase subunit 5, partial cds, isolate:24-99P18.    44   1.1    1
AB053514|AB053514.1 Carabus stjernvalli mitochondrial gene for NADH dehydrogenase subunit 5, partial cds, isolate:23-99P17.    44   1.1    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 86,405,938

 psg: 0.99  gvh: 0.71  alm: 0.42  top: 0.67  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for VHA882 is mit

>VHA882F.Seq
AAATTTAATTGTTTGCGTATAATATCAATATTATTATTATTTTTTTTTTTNCAANATTTT
AATTNATTGGTTTTTTTAANANATTTTTTTTTTTTTTTNCCANNCCCCGGCCCNTNAAAA
AANCCCCTTTTTTTTTTTAAAAAAANNTTNAAAAAAAAANNNNNNNNNN