NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA876
Library VH
(Link to library)
Clone ID VHA876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14919-1
Original site URL
Representative seq. ID VHA876P
(Link to Original site)
Representative DNA sequence 
>VHA876 (VHA876Q) /CSM/VH/VHA8-D/VHA876Q.Seq.d/
GGATTATTTTATTTTACTCACACAAGTAATTATATAATATACATATACATATAAAATGGG
TTCAGTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAA
TAGAGAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATC
AAGAGCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCC
AGGTTCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAA
GAGAGCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATA
CAGTGGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTAT
AATGGGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAA
GAAGATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGG
TTTAATCGATTATCAACGTTTAGAAGAGAATGCATTATTGTTXXXXXXXXXXTTATTTAA
TGTGTGATATGGCTCATTACAGTGGTTTAGTAGCTGCTCAATTATTGGATTCACCATTCG
ATTATTGTGATGTTGTCACCAGTACCACTTCATAAAACNTTAAGAGGACCACGTTCAGGA
ATCATCTTCTTTAGAAGAGGTAAAAGAGTCGATGGTAATGGTAAAGAAATTGAAGAGTAC
GACATTGAATCAAAGATCAATTTCGCAGTTTTCCCATCACTCCAAGGTGGTCCACATGAA
AATGTTATTGCTGGTGTTGCTGTTGCTCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAG
TATGCCCTTCAAGTTAAAAAGAATGCCGCTGCCATTGGTAATGCTCTCATGAACAAAGGT
TATAAATTGGTTACAAATGGTACTGACAATCATTTAATTCTTTGGGATTTAAGACCAAAG
GAACTCACTGGTAATAAATTTGAAAAAGCTGCCGATATCGCTAATATCACCGTCAATAAA
AATGCCGTCCATGGTGATACCAATGCAATTTCACCAGGTGGTATTCGTATTGGTTCATCT
GCTCTCACAAGTAGAGGTTTAAAGGAAGCCGATTTTGAAAAGATTGCTGATTTCCTTGAT
AGAATCGTTTCAATCTCTCTTGAAATTCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTT
GTTGTTGAAATTAATAAATCAAAAGAATTATTAGATTTACGTAAAGAAGTTGAAGAATTC
TCTTCAAAATTCACTTTACCAGGTATTTAAATAATAAGGTAAAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
dyfilltqvii*YTYTYKMGSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTS
RAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPY
SGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADG
LIDYQRLEENALL---

---YLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTS*nxkrttfrnhll*kr*ksrw*w*
rn*rvrh*ikdqfrsfpitprwst*kcycwccccsqrsrlsriqrvcpss*kecrchw*c
sheqrl*igykwy*qsfnslgfktkgthw**i*kscryr*yhrq*kcrpw*yqcnftrwy
sywficshk*rfkgsrf*kdc*fp**nrfnls*nsrscr*eig*fcc*n**ikriirft*
rs*rilfkihftrylnnkvkn
Translated Amino Acid sequence (All Frames) 
Frame A:
glfyfthtsnyiiyiyi*ngfsir*ytikrs***nl*ine*rkr*ti*rfrincl*kfyi
kssygsiritfyk*icrrlsrfkilwwyrsc**irnslskesiksipfg*e*mgc*csti
qw*ssqfrslhsiikttrsyngfrftirwsfnswlsnr*eedfsiinlfrinaisnwc*w
fnrlstfrreciiv---

---lfnv*ygslqwfsscsiigftirll*cchqyhfikx*edhvqesssleevkesmvmv
kklksttlnqrsisqfshhskvvhmkmlllvllllskkptlknsksmpfklkrmplplvm
ls*tkvinwlqmvltii*ffgi*dqrnslvinlkklpislispsikmpsmvipmqfhqvv
fvlvhllsqvev*rkpilkrllisliesfqsllkfkvvsvrnwlilllklinqkny*iyv
kklknslqnslyqvfk**gkk

Frame B:
dyfilltqvii*YTYTYKMGSVSGNTPLKEVDNEIFELMNREKDRQFKGLELIASENFTS
RAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPY
SGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADG
LIDYQRLEENALL---

---YLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTS*nxkrttfrnhll*kr*ksrw*w*
rn*rvrh*ikdqfrsfpitprwst*kcycwccccsqrsrlsriqrvcpss*kecrchw*c
sheqrl*igykwy*qsfnslgfktkgthw**i*kscryr*yhrq*kcrpw*yqcnftrwy
sywficshk*rfkgsrf*kdc*fp**nrfnls*nsrscr*eig*fcc*n**ikriirft*
rs*rilfkihftrylnnkvkn

Frame C:
iilfyshk*lynihihikwvqyqvihh*kklimksln**iekkidnlkv*n*lplkilhq
eqlwkh*dhilqinmqkviqvqdimvvqkllmn*klfvkreh*khsvwmrvngvlmfnht
vvvqpisqftqhy*dhtiv*wv*iyhqvvi*lmvikpirrrfqhhqsfsnqchiklvlmv
*siinv*krmhyc---

---i*cviwlitvv**llnywihhsiivmlspvplhktlrgprsgiiffrrgkrvdgngk
eieeydieskinfavfpslqggphenviagvavalkeadsqefkeyalqvkknaaaigna
lmnkgyklvtngtdnhlilwdlrpkeltgnkfekaadianitvnknavhgdtnaispggi
rigssaltsrglkeadfekiadfldrivsisleiqgrvgkklvdfvveinkskelldlrk
eveefsskftlpgi*iir*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA876 (VHA876Q) /CSM/VH/VHA8-D/VHA876Q.Seq.d/                       2644   0.0
AFC678 (AFC678Q) /CSM/AF/AFC6-D/AFC678Q.Seq.d/                       2595   0.0
VFG867 (VFG867Q) /CSM/VF/VFG8-C/VFG867Q.Seq.d/                       1515   0.0
SFD348 (SFD348Q) /CSM/SF/SFD3-B/SFD348Q.Seq.d/                       1515   0.0
CFJ182 (CFJ182Q) /CSM/CF/CFJ1-D/CFJ182Q.Seq.d/                       1515   0.0
CFF296 (CFF296Q) /CSM/CF/CFF2-D/CFF296Q.Seq.d/                       1515   0.0
CFC879 (CFC879Q) /CSM/CF/CFC8-D/CFC879Q.Seq.d/                       1515   0.0
CFC685 (CFC685Q) /CSM/CF/CFC6-D/CFC685Q.Seq.d/                       1515   0.0
AFN111 (AFN111Q) /CSM/AF/AFN1-A/AFN111Q.Seq.d/                       1511   0.0
SFB690 (SFB690Q) /CSM/SF/SFB6-D/SFB690Q.Seq.d/                       1509   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC760784|EC760784.1 PSE00007663 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   113   4e-35  4
DY889615|DY889615.1 CeleSEQ11548 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11548, mRNA sequence.   107   1e-28  3
EJ391531|EJ391531.1 1092963940338 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002357254 5', genomic survey sequence.    82   6e-24  5
AF009966|AF009966.1 Candida albicans serine hydroxymethyl transferase II (SHMII) gene, complete cds.    58   1e-21  7
EH014367|EH014367.1 USDA-FP_187075 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt069_F05 5', mRNA sequence.    48   3e-21  5
AR548230|AR548230.1 Sequence 3361 from patent US 6747137.          58   4e-21  6
DY965552|DY965552.1 CLSM16779.b1_E20.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM16779, mRNA sequence.    60   1e-18  5
DY984548|DY984548.1 CLSS7823.b1_N11.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS7823, mRNA sequence.    60   1e-18  5
DR912974|DR912974.1 EST1104513 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1L451, mRNA sequence.    68   5e-18  5
EH012294|EH012294.1 USDA-FP_185208 Lysiphlebus testaceipes adult whole body Lysiphlebus testaceipes cDNA clone WLt045_D04 5', mRNA sequence.    44   2e-17  5
dna update 2007. 3.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070546_1(BT070546|pid:none) Picea sitchensis clone WS02735_F19...   266   e-145
GN104742_1(GN104742|pid:none) Sequence 9523 from Patent WO200903...   260   e-143
GN104744_1(GN104744|pid:none) Sequence 9525 from Patent WO200903...   260   e-143
CS497860_1(CS497860|pid:none) Sequence 133 from Patent WO2007011...   258   e-142
EF150642_1(EF150642|pid:none) Populus tremuloides serine hydroxy...   263   e-142
CS497866_1(CS497866|pid:none) Sequence 139 from Patent WO2007011...   258   e-142
CS497762_1(CS497762|pid:none) Sequence 35 from Patent WO20070117...   253   e-141
EF150637_1(EF150637|pid:none) Populus tremuloides serine hydroxy...   255   e-140
CS497758_1(CS497758|pid:none) Sequence 31 from Patent WO20070117...   251   e-139
CS497862_1(CS497862|pid:none) Sequence 135 from Patent WO2007011...   251   e-139
protein update 2009. 6.27
PSORT 

 psg: 0.81  gvh: 0.40  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHA876 is cyt
5' end seq. ID VHA876F
5' end seq. 
>VHA876F.Seq
GGATTATTTTATTTTACTCACACAAGTAATTATATAATATACATATACATATAAAATGGG
TTCAGTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAA
TAGAGAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATC
AAGAGCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCC
AGGTTCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAA
GAGAGCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATA
CAGTGGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTAT
AATGGGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAA
GAAGATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGG
TTTAATCGATTATCAACGTTTAGAAGAGAATGCATTATTGTTNNNNNNNNNN
Length of 5' end seq. 592
3' end seq. ID VHA876Z
3' end seq. 
>VHA876Z.Seq
NNNNNNNNNNTTATTTAATGTGTGATATGGCTCATTACAGTGGTTTAGTAGCTGCTCAAT
TATTGGATTCACCATTCGATTATTGTGATGTTGTCACCAGTACCACTTCATAAAACNTTA
AGAGGACCACGTTCAGGAATCATCTTCTTTAGAAGAGGTAAAAGAGTCGATGGTAATGGT
AAAGAAATTGAAGAGTACGACATTGAATCAAAGATCAATTTCGCAGTTTTCCCATCACTC
CAAGGTGGTCCACATGAAAATGTTATTGCTGGTGTTGCTGTTGCTCTCAAAGAAGCCGAC
TCTCAAGAATTCAAAGAGTATGCCCTTCAAGTTAAAAAGAATGCCGCTGCCATTGGTAAT
GCTCTCATGAACAAAGGTTATAAATTGGTTACAAATGGTACTGACAATCATTTAATTCTT
TGGGATTTAAGACCAAAGGAACTCACTGGTAATAAATTTGAAAAAGCTGCCGATATCGCT
AATATCACCGTCAATAAAAATGCCGTCCATGGTGATACCAATGCAATTTCACCAGGTGGT
ATTCGTATTGGTTCATCTGCTCTCACAAGTAGAGGTTTAAAGGAAGCCGATTTTGAAAAG
ATTGCTGATTTCCTTGATAGAATCGTTTCAATCTCTCTTGAAATTCAAGGTCGTGTCGGT
AAGAAATTGGTTGATTTTGTTGTTGAAATTAATAAATCAAAAGAATTATTAGATTTACGT
AAAGAAGTTGAAGAATTCTCTTCAAAATTCACTTTACCAGGTATTTAAATAATAAGGTAA
AAAAC
Length of 3' end seq. 785
Connected seq. ID VHA876P
Connected seq. 
>VHA876P.Seq
GGATTATTTTATTTTACTCACACAAGTAATTATATAATATACATATACATATAAAATGGG
TTCAGTATCAGGTAATACACCATTAAAAGAAGTTGATAATGAAATCTTTGAATTAATGAA
TAGAGAAAAAGATAGACAATTTAAAGGTTTAGAATTAATTGCCTCTGAAAATTTTACATC
AAGAGCAGTTATGGAAGCATTAGGATCACATTTTACAAATAAATATGCAGAAGGTTATCC
AGGTTCAAGATATTATGGTGGTACAGAAGTTGTTGATGAATTAGAAACTCTTTGTCAAAA
GAGAGCATTAAAAGCATTCCGTTTGGATGAGAGTAAATGGGGTGTTAATGTTCAACCATA
CAGTGGTAGTCCAGCCAATTTCGCAGTTTACACAGCATTATTAAGACCACACGATCGTAT
AATGGGTTTAGATTTACCATCAGGTGGTCATTTAACTCATGGTTATCAAACCGATAAGAA
GAAGATTTCAGCATCATCAATCTTTTTCGAATCAATGCCATATCAAATTGGTGCTGATGG
TTTAATCGATTATCAACGTTTAGAAGAGAATGCATTATTGTT----------TTATTTAA
TGTGTGATATGGCTCATTACAGTGGTTTAGTAGCTGCTCAATTATTGGATTCACCATTCG
ATTATTGTGATGTTGTCACCAGTACCACTTCATAAAACNTTAAGAGGACCACGTTCAGGA
ATCATCTTCTTTAGAAGAGGTAAAAGAGTCGATGGTAATGGTAAAGAAATTGAAGAGTAC
GACATTGAATCAAAGATCAATTTCGCAGTTTTCCCATCACTCCAAGGTGGTCCACATGAA
AATGTTATTGCTGGTGTTGCTGTTGCTCTCAAAGAAGCCGACTCTCAAGAATTCAAAGAG
TATGCCCTTCAAGTTAAAAAGAATGCCGCTGCCATTGGTAATGCTCTCATGAACAAAGGT
TATAAATTGGTTACAAATGGTACTGACAATCATTTAATTCTTTGGGATTTAAGACCAAAG
GAACTCACTGGTAATAAATTTGAAAAAGCTGCCGATATCGCTAATATCACCGTCAATAAA
AATGCCGTCCATGGTGATACCAATGCAATTTCACCAGGTGGTATTCGTATTGGTTCATCT
GCTCTCACAAGTAGAGGTTTAAAGGAAGCCGATTTTGAAAAGATTGCTGATTTCCTTGAT
AGAATCGTTTCAATCTCTCTTGAAATTCAAGGTCGTGTCGGTAAGAAATTGGTTGATTTT
GTTGTTGAAATTAATAAATCAAAAGAATTATTAGATTTACGTAAAGAAGTTGAAGAATTC
TCTTCAAAATTCACTTTACCAGGTATTTAAATAATAAGGTAAAAAAC
Length of connected seq. 1357
Full length Seq ID -
Full length Seq. -
Length of full length seq. -