VHA862
Library VH
(Link to library)
Clone ID VHA862
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11170-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/
XXXXXXXXXXCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTGG
TGGTGGTAAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACA
AGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTAG
AAAGAAAGCTCCAAATCAAGAAATCTCTTTCCTCTCTTGTAAAACTGAAAGTTCTGTG
sequence update 2002. 9.10
Translated Amino Acid sequence
---FNGNSNDLSFLGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNL
LNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVI
DMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV
DVDSILRRLNSKNIFEIVRKKAPNQEISFLSCKTESSV


Translated Amino Acid sequence (All Frames)
Frame A:
---nlmviqmiyhf*vvvvvvvkfkhqlikllylvvidhkqfklvehlqdskveli*n*i
f*iqvnkvcqnsrfnfikivlvfhqliksyhvvllk*akalmsqfqshamvksqih*iqs
liwq*wyyqvkrdstlr*ishyfvy*qklvvsivnliypcgnqfqnqmnvqlkfkyvyhm
*mltlsfvv*ivrislkslerklqikkslsslvklkvl


Frame B:
---i*w*fk*fiifrwwwwww*sssts**scciww**itsnsn*wsiykipr*n*friks
feykstryvkiqdsilsk*fwyfts*snlimwcy*srpkh*chnsnlmqwsnlksiessh
*ygndgitksreill*defpitlsidrnwssrs*ilfihveinsrik*tfs*nsstfttc
rc*lypssfk**eyl*nr*kessksrnlfpll*n*kfc


Frame C:
---FNGNSNDLSFLGGGGGGGKVQAPVNKVVVFGGDRSQAIQISGAFTRFQGRINLELNL
LNTSQQGMSKFKIQFYQNSFGISPADQILSCGAIEVGQSTDVTIPISCNGQISNPLNPVI
DMAMMVLPSQERFYFKMNFPLLCLLTETGRLDRESYLSMWKSIPESNERSVEIQVRLPHV
DVDSILRRLNSKNIFEIVRKKAPNQEISFLSCKTESSV


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA862 (VHA862Q) /CSM/VH/VHA8-C/VHA862Q.Seq.d/ 1172 0.0
SHA570 (SHA570Q) /CSM/SH/SHA5-C/SHA570Q.Seq.d/ 1168 0.0
AHK359 (AHK359Q) /CSM/AH/AHK3-C/AHK359Q.Seq.d/ 1168 0.0
AHE651 (AHE651Q) /CSM/AH/AHE6-C/AHE651Q.Seq.d/ 1168 0.0
SHA168 (SHA168Q) /CSM/SH/SHA1-C/SHA168Q.Seq.d/ 1164 0.0
VHI676 (VHI676Q) /CSM/VH/VHI6-D/VHI676Q.Seq.d/ 1162 0.0
VFF468 (VFF468Q) /CSM/VF/VFF4-C/VFF468Q.Seq.d/ 1160 0.0
CHN465 (CHN465Q) /CSM/CH/CHN4-C/CHN465Q.Seq.d/ 1160 0.0
CHG516 (CHG516Q) /CSM/CH/CHG5-A/CHG516Q.Seq.d/ 1150 0.0
AHA104 (AHA104Q) /CSM/AH/AHA1-A/AHA104Q.Seq.d/ 1148 0.0

own update 2002.12.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC166018|AC166018.2 Oryctolagus cuniculus clone LB1-246C1, WORKING DRAFT SEQUENCE, 3 ordered pieces. 50 0.078 1
AC187854|AC187854.2 Populus trichocarpa clone Pop1-11B14, complete sequence. 38 0.17 5
CX072513|CX072513.1 UCRCS08_28E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-4.g, mRNA sequence. 46 1.2 1
CX072512|CX072512.1 UCRCS08_28E10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-28E10-J20-1-5.b, mRNA sequence. 46 1.2 1
AC140642|AC140642.5 Macaca mulatta clone CH250-288A22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 46 1.2 1
EJ807179|EJ807179.1 1093017468100 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061002728084 5', genomic survey sequence. 46 1.2 1
EJ328016|EJ328016.1 1092963405361 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061002327787 5', genomic survey sequence. 46 1.2 1
ER400257|ER400257.1 1095349054847 Global-Ocean-Sampling_GS-34-01-01-1P5-1P8KB marine metagenome genomic clone 1061005430691 5', genomic survey sequence. 46 1.2 1
AC147774|AC147774.3 Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence. 46 1.2 1
AC138052|AC138052.2 Felis catus clone RP86-222L20, WORKING DRAFT SEQUENCE, 2 ordered pieces. 38 1.2 3
dna update 2007. 3.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54X82) RecName: Full=AP-1 complex subunit beta; AltName: Full=... 409 e-113
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 113 6e-24
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1... 113 6e-24
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful... 113 6e-24
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ... 113 6e-24
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful... 113 6e-24
BC012150_1(BC012150|pid:none) Homo sapiens, clone IMAGE:4558274,... 113 6e-24
AK304126_1(AK304126|pid:none) Homo sapiens cDNA FLJ55646 complet... 113 6e-24
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0... 112 7e-24
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF... 112 1e-23
protein update 2009. 6.27
PSORT

psg: 0.75 gvh: 0.39 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.02 mip: 0.09
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for VHA862 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VHA862Z
3' end seq.
>VHA862Z.Seq
NNNNNNNNNNCAATTTAATGGTAATTCAAATGATTTATCATTTTTAGGTGGTGGTGGTGG
TGGTGGTAAAGTTCAAGCACCAGTTAATAAAGTTGTTGTATTTGGTGGTGATAGATCACA
AGCAATTCAAATTAGTGGAGCATTTACAAGATTCCAAGGTAGAATTAATTTAGAATTAAA
TCTTTTGAATACAAGTCAACAAGGTATGTCAAAATTCAAGATTCAATTTTATCAAAATAG
TTTTGGTATTTCACCAGCTGATCAAATCTTATCATGTGGTGCTATTGAAGTAGGCCAAAG
CACTGATGTCACAATTCCAATCTCATGCAATGGTCAAATCTCAAATCCATTGAATCCAGT
CATTGATATGGCAATGATGGTATTACCAAGTCAAGAGAGATTCTACTTTAAGATGAATTT
CCCATTACTTTGTCTATTGACAGAAACTGGTCGTCTCGATCGTGAATCTTATTTATCCAT
GTGGAAATCAATTCCAGAATCAAATGAACGTTCAGTTGAAATTCAAGTACGTTTACCACA
TGTAGATGTTGACTCTATCCTTCGTCGTTTAAATAGTAAGAATATCTTTGAAATCGTTAG
AAAGAAAGCTCCAAATCAAGAAATCTCTTTCCTCTCTTGTAAAACTGAAAGTTCTGTG
Length of 3' end seq. 658
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -