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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA861
Library VH
(Link to library)
Clone ID VHA861
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15185-1
Original site URL
Representative seq. ID VHA861P
(Link to Original site)
Representative DNA sequence 
>VHA861 (VHA861Q) /CSM/VH/VHA8-C/VHA861Q.Seq.d/
GTTTATTTCTCACAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCG
GTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCA
CCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCG
TTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGT
CAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACT
AAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATA
AATAAAAAAAAAAXXXXXXXXXXGTTTATTTCTCACAGTTTCATACACAATGGCCAAAAG
AACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAA
GCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAA
AGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTT
AGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAG
ACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATAAATAAAATAAATCAGGACCAA
TATACACGGTTTTAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
vyfsqfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhp
lvsgnvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KI
NKKK---

---LFLTVSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRR
SSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*ik*irtnihgfk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
vyfsqfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsdvhp
lvsgnvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyeik*irtnihwf*KI
NKKK---

---vyfsqfhtqwpkeqrkselsvntvpdmvll*esklkrwkspntvptpvhsvvkmpsd
vhplvsgnvtvavkf*lvvlglcqlplvplldqlsdvses*itkpfiyk*nksgpiytvl
k

Frame B:
fishsfihngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqtfir
wylem*rlp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlymk*nksgpiytgfkk*
ikkk---

---fishsfihngqknkesrscr*iryqiwcffkkas*kdgnhptrylhlfilw*rcrqt
firwylem*rlp*sfswwcldyvncrwchc*inyqtsqrvk*lnhlyinkinqdqytrf*
k

Frame C:
lfltvsytmakrtkkvgvvgkygtrygaslrkqvkkmeitqhgtytcsfcgkdavrrssv
giwkcngcrkvlaggawtmstaagatvrstirrlrelnn*tiyi*nkinqdqytlvlknk
*kk---

---LFLTVSYTMAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRR
SSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRELNN*tiyi*ik*irtnihgfk
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA861 (VHA861Q) /CSM/VH/VHA8-C/VHA861Q.Seq.d/                        706   0.0
VHH180 (VHH180Q) /CSM/VH/VHH1-D/VHH180Q.Seq.d/                        698   0.0
VHA808 (VHA808Q) /CSM/VH/VHA8-A/VHA808Q.Seq.d/                        698   0.0
VSH888 (VSH888Q) /CSM/VS/VSH8-D/VSH888Q.Seq.d/                        690   0.0
VSE459 (VSE459Q) /CSM/VS/VSE4-C/VSE459Q.Seq.d/                        682   0.0
VSE429 (VSE429Q) /CSM/VS/VSE4-B/VSE429Q.Seq.d/                        682   0.0
VSI473 (VSI473Q) /CSM/VS/VSI4-D/VSI473Q.Seq.d/                        678   0.0
VSF596 (VSF596Q) /CSM/VS/VSF5-D/VSF596Q.Seq.d/                        678   0.0
VSF225 (VSF225Q) /CSM/VS/VSF2-B/VSF225Q.Seq.d/                        678   0.0
VSG249 (VSG249Q) /CSM/VS/VSG2-C/VSG249Q.Seq.d/                        674   0.0
own update 2002.12.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

EC762495|EC762495.1 PSE00001712 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   137   8e-55  4
DY889330|DY889330.1 CeleSEQ10828 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ10828, mRNA sequence.    80   2e-18  3
EH431344|EH431344.1 NPE00000880 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence.    76   1e-14  2
BW794661|BW794661.1 Branchiostoma floridae cDNA, gastrula clone:bfga038e21, 3' end.    66   1e-14  3
BW781448|BW781448.1 Branchiostoma floridae cDNA, gastrula clone:bfga038e21, 5' end.    66   2e-14  3
EH042658|EH042658.1 AS1RN25P1B06.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.    92   3e-14  1
EH431853|EH431853.1 NPE00000476 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence.    74   4e-14  2
AL116011|AL116011.1 Botrytis cinerea strain T4 cDNA library.       84   8e-14  2
AL116009|AL116009.1 Botrytis cinerea strain T4 cDNA library.       84   8e-14  2
AL115603|AL115603.1 Botrytis cinerea strain T4 cDNA library.       84   8e-14  2
dna update 2007. 3.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UG4) RecName: Full=60S ribosomal protein L37a;  &JE0321(JE03...   189   1e-46
(O61462) RecName: Full=60S ribosomal protein L37a;  &AF040712_1(...   149   1e-34
EZ000381_1(EZ000381|pid:none) TSA: Culex tarsalis Ctar-19 60S ri...   148   2e-34
A63921_1(A63921|pid:none) Sequence 46 from Patent WO9723633.  &C...   147   4e-34
EU125030_1(EU125030|pid:none) Eurythoe complanata ribosomal prot...   146   6e-34
(O61598) RecName: Full=60S ribosomal protein L37a;  &AF052737_1(...   146   7e-34
EU116912_1(EU116912|pid:none) Barentsia elongata putative riboso...   146   7e-34
AM049130_1(AM049130|pid:none) Agriotes lineatus mRNA for ribosom...   145   1e-33
AM049133_1(AM049133|pid:none) Sphaerius sp. APV-2005 mRNA for ri...   145   1e-33
AF363029_1(AF363029|pid:none) Branchiostoma belcheri 60S ribosom...   145   1e-33
protein update 2009. 6.27
PSORT 

 psg: 0.91  gvh: 0.37  alm: 0.44  top: 0.60  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.27  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VHA861 is nuc
5' end seq. ID VHA861F
5' end seq. 
>VHA861F.Seq
GTTTATTTCTCACAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCG
GTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCA
CCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCG
TTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGT
CAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACT
AAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATA
AATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 383
3' end seq. ID VHA861Z
3' end seq. 
>VHA861Z.Seq
NNNNNNNNNNGTTTATTTCTCACAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTC
GGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAG
ATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGA
CGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCT
TGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAG
TTAAATAACTAAACCATTTATATATAAATAAAATAAATCAGGACCAATATACACGGTTTT
AAAAAA
Length of 3' end seq. 366
Connected seq. ID VHA861P
Connected seq. 
>VHA861P.Seq
GTTTATTTCTCACAGTTTCATACACAATGGCCAAAAGAACAAAGAAAGTCGGAGTTGTCG
GTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAAGCAAGTTAAAAAGATGGAAATCA
CCCAACACGGTACCTACACCTGTTCATTCTGTGGTAAAGATGCCGTCAGACGTTCATCCG
TTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTTAGCTGGTGGTGCTTGGACTATGT
CAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAGACGTCTCAGAGAGTTAAATAACT
AAACCATTTATATATGAAATAAAATAAATCAGGACCAATATACACTGGTTTTAAAAAATA
AATAAAAAAAAAA----------GTTTATTTCTCACAGTTTCATACACAATGGCCAAAAG
AACAAAGAAAGTCGGAGTTGTCGGTAAATACGGTACCAGATATGGTGCTTCTTTAAGAAA
GCAAGTTAAAAAGATGGAAATCACCCAACACGGTACCTACACCTGTTCATTCTGTGGTAA
AGATGCCGTCAGACGTTCATCCGTTGGTATCTGGAAATGTAACGGTTGCCGTAAAGTTTT
AGCTGGTGGTGCTTGGACTATGTCAACTGCCGCTGGTGCCACTGTTAGATCAACTATCAG
ACGTCTCAGAGAGTTAAATAACTAAACCATTTATATATAAATAAAATAAATCAGGACCAA
TATACACGGTTTTAAAAAA
Length of connected seq. 729
Full length Seq ID -
Full length Seq. -
Length of full length seq. -