VHA848 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHA848
Library	VH (Link to library)
Clone ID	VHA848 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U12592-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHA8-B/VHA848Q.Seq.d/
Representative seq. ID	VHA848P (Link to Original site)
Representative DNA sequence	>VHA848 (VHA848Q) /CSM/VH/VHA8-B/VHA848Q.Seq.d/ AAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAAT TGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGCCTTGGGGTCCTCCGAATCAG GTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCT CGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCG TACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAG ATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTG GTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTT TGAAGGTTTAAGATGGGTGGTAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTAC GATTAACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACA AAGCATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAA TGTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGXXXXXXXXXXTCCGCTCAACTN TTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT TACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATCTTTACGCTGGGACTAAAGCAGTAGG GCGTGACCGATAAGGGATCCACTGTTATTGCTTTTTGCAAACTATTTCCACAAACGCAAC ACGACTTGTTTCGGGTTGCAATTTTTGTCACTATCAAGGAACATAAATAGATAATAAATA AAAAAAAATGGAATTATTAACAGACGATCAAAAAAATGAATTTCAAATTTGTTTCACACA ATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAGAATCAGTTATGGCATTGAAATC ATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAGGCACAGATTTTAATGGTTTCTT ACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAGCTGATGAATTAAAAAGAGCTTT TAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAGCACAACATTTAAAACAAATTCT TACAACATTAGGTGACACTTTAACATCTCAAGAAGCAGATGAATTAATTAGGGATACTGA TACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTACAAAATTAATTCTTTCAAAATT ACAATAAACC
sequence update	2002.10.25
Translated Amino Acid sequence	kipapsngilgpivirdinwrsrksylflltlpwgppnqvnwrrgfiaqwkstvlwigs rirmvlenrimvfnpiwcsyqphqvskvnslwsnvlmirevgktdllrdkdwlrl vewtywsllfvfyfdgqlfrfkmggnsfqcegllvllydqlincddhresnclikt khcdklksfRNVISAQCSECQSEEIQPSTGK--- ---SAQLFDCRRLSNELGAVSFRVAFSYEGLRLFHflslrwdssrapirdpllllfa nyfhkrnttcfglqflslsrninr*ikkngiinrrskkisnlfhtirrwktskr isygieiigckftricfirhrfwfltscsktsnyss*ikksflfyrwywfnfs ttfktnsynirhfnisrsringyyrrwlyffr*sykinsfkitin
Translated Amino Acid sequence (All Frames)	Frame A: kipapsngilgpivirdinwrsrksylflltlpwgppnqvnwrrgfiaqwkstvlwigs rirmvlenrimvfnpiwcsyqphqvskvnslwsnvlmirevgktdllrdkdwlrl vewtywsllfvfyfdgqlfrfkmggnsfqcegllvllydqlincddhresnclikt khcdklksfRNVISAQCSECQSEEIQPSTGK--- ---SAQLFDCRRLSNELGAVSFRVAFSYEGLRLFHflslrwdssrapirdpllllfa nyfhkrnttcfglqflslsrninr*ikkngiinrrskkisnlfhtirrwktskr isygieiigckftricfirhrfwfltscsktsnyss*ikksflfyrwywfnfs ttfktnsynirhfnisrsringyyrrwlyffrsykinsfkitin Frame B: kflhhrmgygnrssgtsiggrgrvifschclgvlrirstgdedsshngraqsfglgl asakwslktglwylilfgvrtnnhirspriasgqmycrgksakpicnfgirigskgw wsghigvcylfftfrmgncfeglrwvvilsnvracsfcftinsfrtvtitgnptvlkq siaislkafdamflpsalnvkvkrfnlarvn--- ---plnxsivddyqmnvlasersvtrggfsissylyagtkavgrdrgihcycflq tistnatrlvsgcnfchyqgtidnkkkmelltddqknefqicftqfdkdndgrlnpke svmalkslgvnlpesdvssgtdfngflqvvvrklqitdpadelkrafncfdtdgtgsisa qhlkqilttlgdtltsqeadelirdtdtdrdgyissdeatklilsklqt Frame C: nsctiewdirvtdrnpghqlaveeelsflvnialgssesgqletrihrtmeehspldwvs hplngpkpdygisylvfvpittsglqgeplvkcinvdkgsrqnrsvtsgglalkag gvdilefaicflllgwatvlkvdgwffpmglarsalrltanlelrspgiqlfnnk alraklltqcdfcpvlmskrdsthgt--- ---rstxrlttiktrccklpssvqlrgveafplvliftlglkqgvtdkgstviafck lfpqtqhdlfrvaifvtikehkiinkkkwnyqtikkmnfkfvshnsikimmedliqkn qlwhnhwviyqnlmfhqaqilmvsykllenfklliqlmnkellivliqmvlvqfqh ninkflqhvtlhlkkqmnlgilipiemviflqmklqn*ffqnynk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHA848 (VHA848Q) /CSM/VH/VHA8-B/VHA848Q.Seq.d/ 2476 0.0 VHN587 (VHN587Q) /CSM/VH/VHN5-D/VHN587Q.Seq.d/ 1130 0.0 VHI836 (VHI836Q) /CSM/VH/VHI8-B/VHI836Q.Seq.d/ 1106 0.0 VFF294 (VFF294Q) /CSM/VF/VFF2-D/VFF294Q.Seq.d/ 1090 0.0 VHJ738 (VHJ738Q) /CSM/VH/VHJ7-B/VHJ738Q.Seq.d/ 1039 0.0 AHL611 (AHL611Q) /CSM/AH/AHL6-A/AHL611Q.Seq.d/ 1039 0.0 VHH257 (VHH257Q) /CSM/VH/VHH2-C/VHH257Q.Seq.d/ 1025 0.0 CHJ576 (CHJ576Q) /CSM/CH/CHJ5-D/CHJ576Q.Seq.d/ 1023 0.0 VFN416 (VFN416Q) /CSM/VF/VFN4-A/VFN416Q.Seq.d/ 1009 0.0 VHC731 (VHC731Q) /CSM/VH/VHC7-B/VHC731Q.Seq.d/ 967 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AY171066\|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1255 0.0 1 DQ340385\|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 1128 0.0 1 X00601\|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 541 0.0 3 DQ340386\|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 490 0.0 6 DQ340387\|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence. 238 e-151 8 DQ340388\|DQ340388.1 Polysphondylium pallidum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence. 222 e-117 7 EC762226\|EC762226.1 PSE00004248 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 214 e-116 6 EC762692\|EC762692.1 PSE00006710 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 222 e-112 5 EC761116\|EC761116.1 PSE00000223 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 222 e-105 3 EC761150\|EC761150.1 PSE00007674 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence. 222 e-105 3
dna update	2007. 3.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value CP001574_245(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 119 3e-25 AC145330_23(AC145330\|pid:none) Medicago truncatula clone mth2-17... 117 1e-24 AF084425_1(AF084425\|pid:none) Synthetic construct calmodulin mut... 116 2e-24 (P93087) RecName: Full=Calmodulin; Short=CaM; &AB05084... 116 2e-24 CS560270_1(CS560270\|pid:none) Sequence 857 from Patent WO2006032... 115 3e-24 DQ881447_1(DQ881447\|pid:none) Betula halophila calmodulin (CaM) ... 115 3e-24 S58311(S58311) calmodulin - Bidens pilosa &X89890_1(X89890\|pid:... 115 4e-24 X98404_1(X98404\|pid:none) C.annuum mRNA for calmodulin-2. 115 5e-24 (P18061) RecName: Full=Calmodulin; Short=CaM; &AM49494... 115 5e-24 (P11118) RecName: Full=Calmodulin; Short=CaM; &EU93585... 115 5e-24
protein update	2009. 6.27
PSORT	psg: 0.56 gvh: 0.45 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 36.0 %: cytoplasmic 32.0 %: mitochondrial 20.0 %: nuclear 8.0 %: vesicles of secretory system 4.0 %: vacuolar >> prediction for VHA848 is cyt
5' end seq. ID	VHA848F
5' end seq.	>VHA848F.Seq AAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAAT TGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGCCTTGGGGTCCTCCGAATCAG GTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCT CGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCG TACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAG ATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTG GTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTT TGAAGGTTTAAGATGGGTGGTAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTAC GATTAACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACA AAGCATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAA TGTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGNNNNNNNNNN
Length of 5' end seq.	648
3' end seq. ID	VHA848Z
3' end seq.	>VHA848Z.Seq NNNNNNNNNNTCCGCTCAACTNTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGT AAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATCTTT ACGCTGGGACTAAAGCAGTAGGGCGTGACCGATAAGGGATCCACTGTTATTGCTTTTTGC AAACTATTTCCACAAACGCAACACGACTTGTTTCGGGTTGCAATTTTTGTCACTATCAAG GAACATAAATAGATAATAAATAAAAAAAAATGGAATTATTAACAGACGATCAAAAAAATG AATTTCAAATTTGTTTCACACAATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAG AATCAGTTATGGCATTGAAATCATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAG GCACAGATTTTAATGGTTTCTTACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAG CTGATGAATTAAAAAGAGCTTTTAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAG CACAACATTTAAAACAAATTCTTACAACATTAGGTGACACTTTAACATCTCAAGAAGCAG ATGAATTAATTAGGGATACTGATACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTA CAAAATTAATTCTTTCAAAATTACAATAAACC
Length of 3' end seq.	692
Connected seq. ID	VHA848P
Connected seq.	>VHA848P.Seq AAAATTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAAT TGGCGGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGCCTTGGGGTCCTCCGAATCAG GTCAACTGGAGACGAGGATTCATCGCACAATGGAAGAGCACAGTCCTTTGGATTGGGTCT CGCATCCGCTAAATGGTCCTTGAAAACCGGATTATGGTATTTAATCCTATTTGGTGTTCG TACCAATAACCACATCAGGTCTCCAAGGTGAATAGCCTCTGGTCAAATGTATTAATGTAG ATAAGGGAAGTCGGCAAAACCGATCTGTAACTTCGGGATAAGGATTGGCTCTAAAGGCTG GTGGAGTGGACATATTGGAGTTTGCTATTTGTTTTTTACTTTTAGGATGGGCAACTGTTT TGAAGGTTTAAGATGGGTGGTAATTCTTTCCAATGTGAGGGCTTGCTCGTTCTGCTTTAC GATTAACAGCTAATTTAGAACTGTGACGATCACCGGGAATCCAACTGTTTAATTAAAACA AAGCATTGCGATAAGCTTAAAAGCTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAA TGTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACG----------TCCGCTCAACTN TTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT TACGAGGGGTTGAGGCTTTTCCATTAGTTCTTATCTTTACGCTGGGACTAAAGCAGTAGG GCGTGACCGATAAGGGATCCACTGTTATTGCTTTTTGCAAACTATTTCCACAAACGCAAC ACGACTTGTTTCGGGTTGCAATTTTTGTCACTATCAAGGAACATAAATAGATAATAAATA AAAAAAAATGGAATTATTAACAGACGATCAAAAAAATGAATTTCAAATTTGTTTCACACA ATTCGATAAAGATAATGATGGAAGACTTAATCCAAAAGAATCAGTTATGGCATTGAAATC ATTGGGTGTAAATTTACCAGAATCTGATGTTTCATCAGGCACAGATTTTAATGGTTTCTT ACAAGTTGTAGTTAGAAAACTTCAAATTACTGATCCAGCTGATGAATTAAAAAGAGCTTT TAATTGTTTTGATACAGATGGTACTGGTTCAATTTCAGCACAACATTTAAAACAAATTCT TACAACATTAGGTGACACTTTAACATCTCAAGAAGCAGATGAATTAATTAGGGATACTGA TACCGATAGAGATGGTTATATTTCTTCAGATGAAGCTACAAAATTAATTCTTTCAAAATT ACAATAAACC
Length of connected seq.	1320
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas