VHA813 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VHA813
Library	VH (Link to library)
Clone ID	VHA813 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U11302-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VH/VHA8-A/VHA813Q.Seq.d/
Representative seq. ID	VHA813P (Link to Original site)
Representative DNA sequence	>VHA813 (VHA813Q) /CSM/VH/VHA8-A/VHA813Q.Seq.d/ ACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATATATATATA TATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTATGTTACTC AAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAAGTAATGTT CATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAAGAGTTAGA ACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAATTATTTAT TGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCCCACCAGAT TTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAACAAGTTGAA TTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAGAGGAATGT ATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAACCACCTGAA GAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAGCCTGGGAT ACTCCAGCATTACCACXXXXXXXXXXATTTCAATACTCCTGCAGTTTATATAGCAATTCA AGCCGTTCTCTCTTTGTATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGA TGGTGTTTGTCATACCGTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAG AATCGATATCGGTGGTCGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGG TTATGCTTTCACTACAACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTC ATTTGTCTCTCAAGATTTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAA GGATTATACGATGCCCGATAAACAAGTTTTAACCATTGGTAAAGAAAGATTCCGTTGTTA TGAAGCTTTCTTTGACCCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTT AAATGAAACTATCACCTCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGT AGTTTCTGGTGGTTCAACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGA ACTTTTAGTTTCAAATCCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATAT TAGTGTTTGGTGTGGTGGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGAT TACAAAACAAGAATATGAGAAGTTGGTAGAGGAATGTTCATAGAAAAGTTTTTAAATAAA TAAAAAATAAAAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	tnldvkliiicynilyiyiykkKTQMTGFSIPNMSMLLKLANSRLVLHKNKNFEQSNV HKKEIAELLQLGKEEQARVRTVSVINEDYHTEVLGILIIYCETLANRIRGIEGVKVCPPD LKEACCSIIFASPYLDKQVELYKIRKRLIEKFGKKFPEECIDCCCINPKIVHRLSNKPPE ESLVNYYLSNIAKKHNVAWDTPALP--- ---FNTPAVYIAIQAVLSLYASGRTTGTVLDCGDGVCHTVPIYEGYSIPHAIKRIDIGGR DITEYLMRLLTERGYAFTTTAEREIVRDIKEKTSFVSQDFYASMNAPEDNNILKDYTMPD KQVLTIGKERFRCYEAFFDPSVLGKDQNGIHHLLNETITSCDIDIRRDLYKNIVVSGGST MATGFEKRLQKEMELLVSNPQVQIKINAPPNRDISVWCGGSVLGDLKTFSDQWITKQEYE KLVEECSksfinkk*k
Translated Amino Acid sequence (All Frames)	Frame A: tnldvkliiicynilyiyiykkKTQMTGFSIPNMSMLLKLANSRLVLHKNKNFEQSNV HKKEIAELLQLGKEEQARVRTVSVINEDYHTEVLGILIIYCETLANRIRGIEGVKVCPPD LKEACCSIIFASPYLDKQVELYKIRKRLIEKFGKKFPEECIDCCCINPKIVHRLSNKPPE ESLVNYYLSNIAKKHNVAWDTPALP--- ---isillqfiqfkpfslcmhlvvplvpywivvmvfvipcqsmkvilfhmqlkesisvv visqsicvyslkevmlslqppkeksyviskrklhlslkismplmlqriiiysriircp inkfplvkkdsvvmklsltlqyvkikmvfitsmklsplvilifvvisikilflvvq qwqqvlknvykkkwnffqilksklklmhhqivilvfgvvvrfvilklfringlqnknm rswrnvhrkvfkiknkk Frame B: qiwmlnlfvnitfciyiyiknkklkqdfqflivcysnqivdwyyikikilnkvmf ikkrlqnyynvkknkqelerfqllmkiitlkfvflfivklqieleelkvryahqi kkhvvvlylhhhiinklnyirlerdlknlvknsqrnvivvvsiqrlyidyqinhlk nhwtiilvilqrnimpgilqhyh--- ---fqyscslysnssrslfvciwsyhwyriglwwclsyranlrlfystcnknryrws yhrvfnafthkrlcfhynrrkrnrtyqrenficlsrflclyecsrgytqglydar tsfnhwrkipllsflpfstrrskwyssplknyhllyyssslkycsfwwfn ngnrfktftkrngtfsfkssspnncttksyclvwwfgfrsnffgsmdyktri* evgrgmfiekflnkkikn Frame C: kfgcinynllihfvyiyikiknsndrifnsyeyvtqiskigitkkftkcs krdcriitirrrtsksngfsy*rlshsfryfnyllnfsknrnrckgmptrf krsmlyyicitifrtsiidkeinkiwkiprgmyrlllyqskdctiikttr iigklls*ycketcslgyssit--- ---FNTPAVYIAIQAVLSLYASGRTTGTVLDCGDGVCHTVPIYEGYSIPHAIKRIDIGGR DITEYLMRLLTERGYAFTTTAEREIVRDIKEKTSFVSQDFYASMNAPEDNNILKDYTMPD KQVLTIGKERFRCYEAFFDPSVLGKDQNGIHHLLNETITSCDIDIRRDLYKNIVVSGGST MATGFEKRLQKEMELLVSNPQVQIKINAPPNRDISVWCGGSVLGDLKTFSDQWITKQEYE KLVEECSksfinkk*k
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VHA813 (VHA813Q) /CSM/VH/VHA8-A/VHA813Q.Seq.d/ 2510 0.0 VHB304 (VHB304Q) /CSM/VH/VHB3-A/VHB304Q.Seq.d/ 1447 0.0 AHM227 (AHM227Q) /CSM/AH/AHM2-B/AHM227Q.Seq.d/ 1441 0.0 VHC732 (VHC732Q) /CSM/VH/VHC7-B/VHC732Q.Seq.d/ 1419 0.0 CHF491 (CHF491Q) /CSM/CH/CHF4-D/CHF491Q.Seq.d/ 1419 0.0 AHL385 (AHL385Q) /CSM/AH/AHL3-D/AHL385Q.Seq.d/ 1411 0.0 AHF512 (AHF512Q) /CSM/AH/AHF5-A/AHF512Q.Seq.d/ 1398 0.0 CHN502 (CHN502Q) /CSM/CH/CHN5-A/CHN502Q.Seq.d/ 1374 0.0 CHH533 (CHH533Q) /CSM/CH/CHH5-B/CHH533Q.Seq.d/ 1374 0.0 AHI741 (AHI741Q) /CSM/AH/AHI7-B/AHI741Q.Seq.d/ 1368 0.0
own update	2004.12.24
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF234970\|AF234970.1 Argonauta nodosa actin gene, partial cds. 101 3e-26 4 AJ269586\|AJ269586.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-14. 68 5e-23 3 AJ269585\|AJ269585.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-7. 68 5e-23 3 AJ269584\|AJ269584.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-6. 68 5e-23 3 AJ269583\|AJ269583.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-3. 68 5e-23 3 AJ269581\|AJ269581.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-18. 68 5e-23 3 AJ269580\|AJ269580.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-13. 68 5e-23 3 AJ269579\|AJ269579.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-9. 68 5e-23 3 AJ269578\|AJ269578.1 Artemia franciscana mRNA for actin (actin 302 gene), clone RT-PCR-11. 68 5e-23 3 AB034209\|AB034209.1 Oikopleura longicauda OilCA1 mRNA for cytoplasmic actin, complete cds. 72 3e-22 3
dna update	2007. 3.23
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AJ132370_1(AJ132370\|pid:none) Allogromia sp. mRNA for actin 1. 313 9e-84 AY452189_1(AY452189\|pid:none) Sorosphaera veronicae actin 1 gene... 308 2e-82 AF363539_1(AF363539\|pid:none) Cercomonas sp. ATCC 50319 actin (a... 307 5e-82 DQ980435_1(DQ980435\|pid:none) Thaumatomonas sp. TMT002 actin gen... 307 5e-82 AF363536_1(AF363536\|pid:none) Cercomonas sp. ATCC 50318 actin-1 ... 307 7e-82 AM411663_1(AM411663\|pid:none) Plasmodiophora brassicae actII gen... 305 2e-81 AY764017_1(AY764017\|pid:none) Sorites sp. isolate X-1646 clone S... 305 3e-81 AY452181_1(AY452181\|pid:none) Plasmodiophora brassicae actin 3 g... 305 3e-81 AY452190_1(AY452190\|pid:none) Sorosphaera veronicae actin 2 gene... 304 4e-81 AF363535_1(AF363535\|pid:none) Cercomonas sp. ATCC 50317 actin-2 ... 304 4e-81
protein update	2009. 6.26
PSORT	psg: 0.87 gvh: 0.48 alm: 0.39 top: 0.70 tms: 0.00 mit: 0.33 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 28.0 %: mitochondrial 20.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for VHA813 is nuc
5' end seq. ID	VHA813F
5' end seq.	>VHA813F.Seq ACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATATATATATA TATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTATGTTACTC AAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAAGTAATGTT CATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAAGAGTTAGA ACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAATTATTTAT TGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCCCACCAGAT TTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAACAAGTTGAA TTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAGAGGAATGT ATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAACCACCTGAA GAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAGCCTGGGAT ACTCCAGCATTACCACNNNNNNNNNN
Length of 5' end seq.	626
3' end seq. ID	VHA813Z
3' end seq.	>VHA813Z.Seq NNNNNNNNNNATTTCAATACTCCTGCAGTTTATATAGCAATTCAAGCCGTTCTCTCTTTG TATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGATGGTGTTTGTCATACC GTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAGAATCGATATCGGTGGT CGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGGTTATGCTTTCACTACA ACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTCATTTGTCTCTCAAGAT TTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAAGGATTATACGATGCCC GATAAACAAGTTTTAACCATTGGTAAAGAAAGATTCCGTTGTTATGAAGCTTTCTTTGAC CCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTTAAATGAAACTATCACC TCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGTAGTTTCTGGTGGTTCA ACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGAACTTTTAGTTTCAAAT CCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATATTAGTGTTTGGTGTGGT GGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGATTACAAAACAAGAATAT GAGAAGTTGGTAGAGGAATGTTCATAGAAAAGTTTTTAAATAAATAAAAAATAAAAAAT
Length of 3' end seq.	779
Connected seq. ID	VHA813P
Connected seq.	>VHA813P.Seq ACAAATTTGGATGTTAAATTAATTATAATTTGTTAATATAACATTTTGTATATATATATA TATAAAAAATAAAAAACTCAAATGACAGGATTTTCAATTCCTAATATGAGTATGTTACTC AAATTAGCAAATAGTAGATTGGTATTACATAAAAATAAAAATTTTGAACAAAGTAATGTT CATAAAAAAGAGATTGCAGAATTATTACAATTAGGTAAAGAAGAACAAGCAAGAGTTAGA ACGGTTTCAGTTATTAATGAAGATTATCACACTGAAGTTTTAGGTATTTTAATTATTTAT TGTGAAACTTTAGCAAATAGAATTAGAGGAATTGAAGGTGTAAAGGTATGCCCACCAGAT TTAAAAGAAGCATGTTGTAGTATTATATTTGCATCACCATATTTAGATAAACAAGTTGAA TTATATAAGATTAGAAAGAGATTAATTGAAAAATTTGGTAAAAAATTCCCAGAGGAATGT ATAGATTGTTGTTGTATCAATCCAAAGATTGTACATAGATTATCAAATAAACCACCTGAA GAATCATTGGTAAACTATTATCTTAGTAATATTGCAAAGAAACATAATGTAGCCTGGGAT ACTCCAGCATTACCAC----------ATTTCAATACTCCTGCAGTTTATATAGCAATTCA AGCCGTTCTCTCTTTGTATGCATCTGGTCGTACCACTGGTACCGTATTGGATTGTGGTGA TGGTGTTTGTCATACCGTGCCAATCTATGAAGGTTATTCTATTCCACATGCAATTAAAAG AATCGATATCGGTGGTCGTGATATCACAGAGTATTTAATGCGTTTACTCACTGAAAGAGG TTATGCTTTCACTACAACCGCCGAAAGAGAAATCGTACGTGATATCAAAGAGAAAACTTC ATTTGTCTCTCAAGATTTCTATGCCTCTATGAATGCTCCAGAGGATAATAATATACTCAA GGATTATACGATGCCCGATAAACAAGTTTTAACCATTGGTAAAGAAAGATTCCGTTGTTA TGAAGCTTTCTTTGACCCTTCAGTACTAGGTAAAGATCAAAATGGTATTCATCACCTCTT AAATGAAACTATCACCTCTTGTGATATTGATATTCGTCGTGATCTCTATAAAAATATTGT AGTTTCTGGTGGTTCAACAATGGCAACAGGTTTTGAAAAACGTTTACAAAAAGAAATGGA ACTTTTAGTTTCAAATCCTCAAGTCCAAATTAAAATTAATGCACCACCAAATCGTGATAT TAGTGTTTGGTGTGGTGGTTCGGTTTTAGGTGATCTTAAAACTTTTTCGGATCAATGGAT TACAAAACAAGAATATGAGAAGTTGGTAGAGGAATGTTCATAGAAAAGTTTTTAAATAAA TAAAAAATAAAAAAT
Length of connected seq.	1385
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas