VHA757
Library VH
(Link to library)
Clone ID VHA757
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID VHA757P
(Link to Original site)
Representative DNA sequence
>VHA757 (VHA757Q) /CSM/VH/VHA7-C/VHA757Q.Seq.d/
ATTTCATTCAACAATTACTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTC
ATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCC
AATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANNNNNNAAAAAAAAAANGNCCCCCNNNAAAAAAAXXXXXXXXXX
CTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCA
CTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCA
TTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAAC
TTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCAC
GTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTA
TGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATT
CCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGG
GTTGGGCTGTTTGTGCTTGGAT
sequence update 2002.10.25
Translated Amino Acid sequence
isfnnyfflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKKKK
KKKKKXXXKKXXPXXK---

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAW


Translated Amino Acid sequence (All Frames)
Frame A:
isfnnyfflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKKKK
KKKKKXXXKKXXPXXK---

---lkiv*elemnqingifskyslwhfvmvsi**vqplyslqsfmmvlgsmmlsifvs*p
imnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslclklllpllvsmvsvvi
hmipfpiiqiiqymvqiskvvvgvglfvlg

Frame B:
fhstitff*lhkkktynnnsfk*ikvi*iktsnyifnffpififrnslkinill*kkkkk
kkkkkxxkkkxxpxkk---

---*rscks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*wylvp*cyqssylnr
**tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvsnccylywclwfpwls
t*flfr*srlsstwykfprlwlglgclcld

Frame C:
fiqqllffscikkklitiihlnk*klfk*klqiiysifsqylfleil*k*ifyykkkkkk
kkkkxxxkkkxppxkk---

---KDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRILTD
NELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYP
HDSFSDNPDYPVHGTNFQGCGWGWAVCAW

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/ 876 0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/ 876 0.0
VHP365 (VHP365Q) /CSM/VH/VHP3-C/VHP365Q.Seq.d/ 876 0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/ 876 0.0
VHN446 (VHN446Q) /CSM/VH/VHN4-B/VHN446Q.Seq.d/ 876 0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/ 876 0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/ 876 0.0
VHI867 (VHI867Q) /CSM/VH/VHI8-C/VHI867Q.Seq.d/ 876 0.0
VHI618 (VHI618Q) /CSM/VH/VHI6-A/VHI618Q.Seq.d/ 876 0.0
VHD413 (VHD413Q) /CSM/VH/VHD4-A/VHD413Q.Seq.d/ 876 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase. 876 0.0 1
CV540351|CV540351.1 POD_031_B09 Phaseolus vulgaris pod EST library Phaseolus vulgaris cDNA 5', mRNA sequence. 32 0.67 3
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence. 44 5.0 1
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence. 44 5.0 1
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence. 44 5.0 1
CV116033|CV116033.1 AGENCOURT_31532130 NIH_MGC_269 Rattus norvegicus cDNA clone IMAGE:7458092 5', mRNA sequence. 44 5.0 1
CK473247|CK473247.1 AGENCOURT_17619315 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128539 5', mRNA sequence. 44 5.0 1
CF108319|CF108319.1 Shultzomica01570 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone Contig1237 5', mRNA sequence. 44 5.0 1
CB788513|CB788513.1 AMGNNUC:MRPE3-00057-A10-A placenta embryo D17 (10379) Rattus norvegicus cDNA clone mrpe3-00057-a10 5', mRNA sequence. 44 5.0 1
CA508248|CA508248.1 UI-R-FS0-cqn-c-13-0-UI.s1 UI-R-FS0 Rattus norvegicus cDNA clone UI-R-FS0-cqn-c-13-0-UI 3', mRNA sequence. 44 5.0 1
dna update 2007. 3.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid... 313 4e-84
(P54679) RecName: Full=Probable plasma membrane ATPase; ... 313 4e-84
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co... 110 3e-23
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1... 110 3e-23
BT002855_1(BT002855|pid:none) Arabidopsis thaliana clone RAFL15-... 110 4e-23
(Q9SH76) RecName: Full=ATPase 6, plasma membrane-type; ... 110 4e-23
(Q9M2A0) RecName: Full=ATPase 8, plasma membrane-type; ... 109 7e-23
T12577(T12577) H+-exporting ATPase (EC 3.6.3.6) - common ice pla... 109 7e-23
(Q03194) RecName: Full=Plasma membrane ATPase 4; EC=3.6... 109 9e-23
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+... 109 9e-23
protein update 2009. 6.26
PSORT

psg: 0.03 gvh: 0.51 alm: 0.25 top: 0.53 tms: 0.20 mit: 0.32 mip: 0.00
nuc: 0.44 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: plasma membrane
28.0 %: endoplasmic reticulum
12.0 %: mitochondrial
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHA757 is pla

5' end seq. ID VHA757F
5' end seq.
>VHA757F.Seq
ATTTCATTCAACAATTACTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTC
ATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCC
AATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANNNNNNAAAAAAAAAANGNCCCCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 240
3' end seq. ID VHA757Z
3' end seq.
>VHA757Z.Seq
NNNNNNNNNNCTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTC
GAAGTATTCACTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTC
TTTGCAATCATTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACC
GATAATGAACTTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATT
TTCGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTT
GCTTTCGTTATGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTAT
CCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGT
TGTGGTTGGGGTTGGGCTGTTTGTGCTTGGAT
Length of 3' end seq. 452
Connected seq. ID VHA757P
Connected seq.
>VHA757P.Seq
ATTTCATTCAACAATTACTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTC
ATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCC
AATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAANNNNNNAAAAAAAAAANGNCCCCCNNNAAAAAAA----------
CTAAAGATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCA
CTATGGCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCA
TTCATGATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAAC
TTCGTGGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCAC
GTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTA
TGTCTCAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATT
CCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGG
GTTGGGCTGTTTGTGCTTGGAT
Length of connected seq. 672
Full length Seq ID -
Full length Seq. -
Length of full length seq. -