NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA740
Library VH
(Link to library)
Clone ID VHA740
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID VHA740P
(Link to Original site)
Representative DNA sequence 
>VHA740 (VHA740Q) /CSM/VH/VHA7-B/VHA740Q.Seq.d/
ACCNAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAA
ACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAAT
TAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGT
TAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAAT
TTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATG
TTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAG
CCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGG
CAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCA
CGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGT
TAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTT
GCXXXXXXXXXXTTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTT
GTGCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAG
CACAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAA
TTATTAAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTG
CTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATA
TTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTC
AAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAAC
ATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTAGTC
ATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATG
ATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAATTG
ATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTGG
GTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTTCAAC
TAACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCATCAA
AAGGTAGTAAAAAAACAAAAAAACCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
XKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQML
GFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEA
YLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKL
REKLDDPEPSVVSCSVNVIC---

---QSVYMLNSLKVFSHACAKANGDKIPSLDDDDEEEEAQEEEDQNEITHEIVQECLEII
KSRLTIFTHSIYLNVQERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKAQK
KVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDEDDE
TNSSHSGHSSSNFNRHPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQLT
GDLGHLHVGASSNRPMPSKGSKKTKKP
Translated Amino Acid sequence (All Frames) 
Frame A:
txny*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpskn*hifkc
*dlilvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisyhrikvk
pi*h*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr*dqhsqs
*ernwmipshrlyhaqsm*f---

---fnqftc*ih*kfslmlvqkqtvtkshh*tmmmrkrkhkkkrtkmkslmksfknvlkl
lnhv*qfslivft*myknvlvllmnyyhstqslknkviifqrs*fhcsqnn*iqlvqklk
rkyqfqkv*i*mnglmiqniknqlkrmkmmifsiqvhlvikrnitnitvedmmvmmmkmm
kpivliqviqvvisiviqlifkdkrkkd*enkliihicwvvkyqrnyqpmilkifqwfn*
lvi*vifmlvhhqidqchqkvvkkqknq

Frame B:
pktienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpkiniysnv
ri*y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfliiesk*s
lfsielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisriaktsipkv
kreig*sraigcimlsqcdl---

---sislhvkfiksflsclckskr*qnpiirr***grgstrrrgpk*nhs*nrsrms*ny
*itfnnfhs*ylpkctrtclsy**iiiilhsh*rtr**yfkgvnfivhrtiksswskssk
estnsrrfrfr*md**sktsrtn*rg*r**yfqykyi*ssketsqtspwri*w****r**
nq*fsfrsfk**fqsssn*ysktkgrkikkts**siyvgw*sikeiinq*s*kyssgstn
w*frssscwciik*tnaikr**knkktk

Frame C:
XKLLKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQML
GFDISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEA
YLALNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKL
REKLDDPEPSVVSCSVNVIC---

---QSVYMLNSLKVFSHACAKANGDKIPSLDDDDEEEEAQEEEDQNEITHEIVQECLEII
KSRLTIFTHSIYLNVQERACLINELLSFYTVTKEQGNNISKELISLFTEQLNPVGPKAQK
KVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFNTSTSSHQKKHHKHHRGGYDGDDDEDDE
TNSSHSGHSSSNFNRHPIDIQRQKEERLRKQANNPYMLGGKVSKKLSTNDPENIPVVQLT
GDLGHLHVGASSNRPMPSKGSKKTKKP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA740 (VHA740Q) /CSM/VH/VHA7-B/VHA740Q.Seq.d/                       2099   0.0
VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1146   0.0
SHJ269 (SHJ269Q) /CSM/SH/SHJ2-C/SHJ269Q.Seq.d/                       1146   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1146   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1146   0.0
SHA829 (SHA829Q) /CSM/SH/SHA8-B/SHA829Q.Seq.d/                       1146   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1146   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1146   0.0
AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1146   0.0
AFG346 (AFG346Q) /CSM/AF/AFG3-B/AFG346Q.Seq.d/                       1146   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DB731624|DB731624.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10011L17, 5' end partial sequence.    56   1e-05  2
EC374033|EC374033.1 G840P35FI4.T0 Oscarella carmela pSport1 Library I Oscarella carmela cDNA, mRNA sequence.    60   2e-05  2
DW673401|DW673401.1 CNB376-D04.y1d-s SHGC-CNB2 Gasterosteus aculeatus cDNA clone CNB376-D04 5', mRNA sequence.    60   2e-04  1
DW665490|DW665490.1 CNB331-F04.y1d-s SHGC-CNB2 Gasterosteus aculeatus cDNA clone CNB331-F04 5', mRNA sequence.    60   2e-04  1
DT764647|DT764647.1 EST1198496 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1Z379, mRNA sequence.    58   7e-04  1
BJ615522|BJ615522.1 Xenopus laevis cDNA clone:XL172g12, 5' end.    50   9e-04  2
CO384645|CO384645.1 AGENCOURT_26188005 Blumberg_Cho dorsal blastopore lip Xenopus laevis cDNA clone IMAGE:7296313 3', mRNA sequence.    50   0.001  2
DU899809|DU899809.1 410264 Tomato HindIII BAC Library Solanum lycopersicum genomic clone LE_HBa0217G06 5, genomic survey sequence.    46   0.005  2
CJ447531|CJ447531.1 Macaca fascicularis mRNA, clone: QflA-12866, 5' end, expressed in brain frontal lobe.    44   0.009  2
CB016827|HUMSET Human set gene, complete cds, mRNA sequence.    44   0.012  2
dna update 2007. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   240   1e-61
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   240   1e-61
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   240   1e-61
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   240   1e-61
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   238   4e-61
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   238   5e-61
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   238   5e-61
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   238   5e-61
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   238   5e-61
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   236   2e-60
protein update 2009. 6.26
PSORT 

 psg: 0.67  gvh: 0.42  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: peroxisomal

>> prediction for VHA740 is nuc
5' end seq. ID VHA740F
5' end seq. 
>VHA740F.Seq
ACCNAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAA
ACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAAT
TAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGT
TAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAAT
TTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATG
TTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAG
CCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGG
CAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCA
CGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGT
TAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTT
GCNNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID VHA740Z
3' end seq. 
>VHA740Z.Seq
NNNNNNNNNNTTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTTGT
GCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAGCA
CAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAATT
ATTAAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTGCT
TGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATATT
TCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTCAA
AAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAACAT
CAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTAGTCAT
CAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATGAT
GAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAATTGAT
ATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTGGGT
GGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTTCAACTA
ACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCATCAAAA
GGTAGTAAAAAAACAAAAAAACCAAA
Length of 3' end seq. 806
Connected seq. ID VHA740P
Connected seq. 
>VHA740P.Seq
ACCNAAAACTATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAA
ACCATAAAAAGAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAAT
TAAAAGGTGATATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGT
TAGGATTTGATATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAAT
TTTCATCAAAAAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATG
TTATTGTATTGGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAG
CCTATTTAGCATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGG
CAAATGATATCCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCA
CGGTGTTATATAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGT
TAAGAGAGAAATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTT
GC----------TTCAATCAGTTTACATGTTAAATTCATTAAAAGTTTTCTCTCATGCTT
GTGCAAAAGCAAACGGTGACAAAATCCCATCATTAGACGATGATGATGAGGAAGAGGAAG
CACAAGAAGAAGAGGACCAAAATGAAATCACTCATGAAATCGTTCAAGAATGTCTTGAAA
TTATTAAATCACGTTTAACAATTTTCACTCATAGTATTTACCTAAATGTACAAGAACGTG
CTTGTCTTATTAATGAATTATTATCATTCTACACAGTCACTAAAGAACAAGGTAATAATA
TTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCAAAAGCTC
AAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGATCCAAAAC
ATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACATCTAGTC
ATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGATGAAGATG
ATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCATCCAATTG
ATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAATCCATATATGTTGG
GTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGTGGTTCAAC
TAACTGGTGATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCCATCAA
AAGGTAGTAAAAAAACAAAAAAACCAAA
Length of connected seq. 1398
Full length Seq ID -
Full length Seq. -
Length of full length seq. -