VHA713
Library VH
(Link to library)
Clone ID VHA713
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA713 (VHA713Q) /CSM/VH/VHA7-A/VHA713Q.Seq.d/
TTGAACAAAATGANATCTCACTCATGTGATCCACAACAACCTCTCTTATTCTCTTATATG
AAATATTTATTNNGAAGCTTATAAAGCAATGATTGAAGTACTCACTCGGCAAAATACTAA
ATTTGAACATACTAANTXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
LNKMXSHSCDPQQPLLFSYMKYLXXSL*snd*sthsaky*i*ty*---


Translated Amino Acid sequence (All Frames)
Frame A:
LNKMXSHSCDPQQPLLFSYMKYLXXSL*snd*sthsaky*i*ty*---


Frame B:
*tk*xlthvihnnlsysli*niyxeaykamievltrqntkfehtx---


Frame C:
eqnxislm*stttslillyeifixklikq*lkyslgkilnlnil---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA713 (VHA713Q) /CSM/VH/VHA7-A/VHA713Q.Seq.d/ 250 5e-66
VHQ486 (VHQ486Q) /CSM/VH/VHQ4-D/VHQ486Q.Seq.d/ 208 2e-53
VHQ255 (VHQ255Q) /CSM/VH/VHQ2-C/VHQ255Q.Seq.d/ 208 2e-53
VHP666 (VHP666Q) /CSM/VH/VHP6-C/VHP666Q.Seq.d/ 208 2e-53
VHP290 (VHP290Q) /CSM/VH/VHP2-D/VHP290Q.Seq.d/ 208 2e-53
VHO837 (VHO837Q) /CSM/VH/VHO8-B/VHO837Q.Seq.d/ 208 2e-53
VHO756 (VHO756Q) /CSM/VH/VHO7-C/VHO756Q.Seq.d/ 208 2e-53
VHN713 (VHN713Q) /CSM/VH/VHN7-A/VHN713Q.Seq.d/ 208 2e-53
VHN263 (VHN263Q) /CSM/VH/VHN2-C/VHN263Q.Seq.d/ 208 2e-53
VHM819 (VHM819Q) /CSM/VH/VHM8-A/VHM819Q.Seq.d/ 208 2e-53

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence. 115 2e-48 3
AU185981|AU185981.1 Homo sapiens cDNA clone:B02496-054. 42 3.7 1
BE180485|BE180485.1 RC1-HT0623-290300-011-d04 HT0623 Homo sapiens cDNA, mRNA sequence. 42 3.7 1
AC140362|AC140362.1 Mus musculus chromosome UNK clone RP23-210F5, WORKING DRAFT SEQUENCE, 11 unordered pieces. 42 3.7 1
AC091082|AC091082.3 Homo sapiens chromosome 11 clone RP11-869B15 map 11, WORKING DRAFT SEQUENCE, 13 unordered pieces. 42 3.7 1
AC090368|AC090368.3 Homo sapiens chromosome 11 clone RP11-686D5 map 11, WORKING DRAFT SEQUENCE, 12 unordered pieces. 42 3.7 1
AC090316|AC090316.2 Homo sapiens chromosome 11 clone RP11-772K10 map 11, WORKING DRAFT SEQUENCE, 23 unordered pieces. 42 3.7 1
Y12335|Y12335.1 H.sapiens genomic DNA (PAC 838L14) from chromosome 11. 42 3.7 1
AP001558|AP001558.2 Homo sapiens genomic DNA, chromosome 11q13 clone:RP11-686D5, WORKING DRAFT SEQUENCE, 40 unordered pieces. 42 3.7 1
AP000928|AP000928.2 Homo sapiens genomic DNA, chromosome 11q13 clone:RP11-772K10, WORKING DRAFT SEQUENCE, 33 unordered pieces. 42 3.7 1
dna update 2007. 3.21
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 160,831,536
protein update 2009. 6.26
PSORT

psg: 0.84 gvh: 0.24 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VHA713 is nuc

5' end seq. ID VHA713F
5' end seq.
>VHA713F.Seq
TTGAACAAAATGANATCTCACTCATGTGATCCACAACAACCTCTCTTATTCTCTTATATG
AAATATTTATTNNGAAGCTTATAAAGCAATGATTGAAGTACTCACTCGGCAAAATACTAA
ATTTGAACATACTAANTNNNNNNNNNN
Length of 5' end seq. 147
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -