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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA711
Library VH
(Link to library)
Clone ID VHA711
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID VHA711P
(Link to Original site)
Representative DNA sequence 
>VHA711 (VHA711Q) /CSM/VH/VHA7-A/VHA711Q.Seq.d/
ATTTCATTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATT
CATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCC
CAATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAXXXXX
XXXXXCCGTNATCATTGCCATTTTGAATGATGGTACCATGTTAACAATCTTTAAAGATCG
TGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACT
TTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGATGG
TACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCT
CATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGG
TTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAAT
TGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGA
TAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGT
TTGTGCTTGGA
sequence update 2002.10.25
Translated Amino Acid sequence 
fhstitfflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKK--
-

---VIIAILNDGTMLTIFKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHD
GTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQ
IVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAW
Translated Amino Acid sequence (All Frames) 
Frame A:
isfnnyfffscikkklitiihlnk*klfk*klqiiysifsqylfleil*k*ifyykkk--
-

---pxslpf*mmvpc*qslkiv*elemnqingifskyslwhfvmvsi**vqplyslqsfm
mvlgsmmlsifvs*pimnfvvssifkslslvlqlfsyhvvkvsltlnvqvil*sllslcl
klllpllvsmvsvvihmipfpiiqiiqymvqiskvvvgvglfvlg

Frame B:
fhstitfflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKK--
-

---rxhchfe*wyhvnnl*rscks*k*trsmesfrsihygtllwflfsrfnhcilcnhs*
wylvp*cyqssylnr**tswshlssslylwscnyfrit*srflll*tsr*scnlcfryvs
nccylywclwfpwlst*flfr*srlsstwykfprlwlglgclcl

Frame C:
fiqqllff*lhkkktynnnsfk*ikvi*iktsnyifnffpififrnslkinill*kk---

---VIIAILNDGTMLTIFKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHD
GTWFHDAINLRILTDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQ
IVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAW
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA711 (VHA711Q) /CSM/VH/VHA7-A/VHA711Q.Seq.d/                        957   0.0
VHP365 (VHP365Q) /CSM/VH/VHP3-C/VHP365Q.Seq.d/                        950   0.0
VHN446 (VHN446Q) /CSM/VH/VHN4-B/VHN446Q.Seq.d/                        950   0.0
VHJ167 (VHJ167Q) /CSM/VH/VHJ1-C/VHJ167Q.Seq.d/                        950   0.0
VHI867 (VHI867Q) /CSM/VH/VHI8-C/VHI867Q.Seq.d/                        950   0.0
VHI618 (VHI618Q) /CSM/VH/VHI6-A/VHI618Q.Seq.d/                        950   0.0
VHB591 (VHB591Q) /CSM/VH/VHB5-D/VHB591Q.Seq.d/                        950   0.0
VHB587 (VHB587Q) /CSM/VH/VHB5-D/VHB587Q.Seq.d/                        950   0.0
VFN107 (VFN107Q) /CSM/VF/VFN1-A/VFN107Q.Seq.d/                        950   0.0
CHR538 (CHR538Q) /CSM/CH/CHR5-B/CHR538Q.Seq.d/                        950   0.0
own update 2004. 8. 1
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase.              942   0.0    1
AM487350|AM487350.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X080608.12, clone ENTAV 115.    44   0.001  2
DX422057|DX422057.1 BE1076_P24_F IASMA L1 HindIII BAC library Vitis vinifera genomic, genomic survey sequence.    44   0.010  2
CB980117|CB980117.1 CAB70001_IaR_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaR_H03 3', mRNA sequence.    44   0.011  2
CB979848|CB979848.1 CAB70001_IIcF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IIcF_H03 5', mRNA sequence.    44   0.013  2
CB980047|CB980047.1 CAB70001_IaF_H03 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70001_IaF_H03 5', mRNA sequence.    44   0.014  2
AM457830|AM457830.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X117072.11, clone ENTAV 115.    38   0.014  2
AM439899|AM439899.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X185932.8, clone ENTAV 115.    38   0.014  2
AM482224|AM482224.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X065969.13, clone ENTAV 115.    38   0.014  2
CT502850|CT502850.1 A BAC library has been constructed from cultivar Cabernet Sauvignon  using two different restriction enzymes : HindIII (clone prefix :  VCS1H) and EcoRI (clone prefix : VCS1E).    44   0.014  2
dna update 2007. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid...   337   2e-91
(P54679) RecName: Full=Probable plasma membrane ATPase;         ...   337   2e-91
DQ103594_5(DQ103594|pid:none) Capsella rubella clone BAC 8F1, co...   131   2e-29
DQ103595_5(DQ103595|pid:none) Arabidopsis arenosa clone BAC 28N1...   131   2e-29
BT002855_1(BT002855|pid:none) Arabidopsis thaliana clone RAFL15-...   131   2e-29
(Q9SH76) RecName: Full=ATPase 6, plasma membrane-type;          ...   131   2e-29
(Q9M2A0) RecName: Full=ATPase 8, plasma membrane-type;          ...   130   4e-29
T12577(T12577) H+-exporting ATPase (EC 3.6.3.6) - common ice pla...   130   4e-29
(Q03194) RecName: Full=Plasma membrane ATPase 4;          EC=3.6...   130   5e-29
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+...   130   5e-29
protein update 2009. 6.26
PSORT 

 psg: 0.74  gvh: 0.52  alm: 0.25  top: 0.53  tms: 0.20  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for VHA711 is end
5' end seq. ID VHA711F
5' end seq. 
>VHA711F.Seq
ATTTCATTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATT
CATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCC
CAATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAANNNNN
NNNNN
Length of 5' end seq. 185
3' end seq. ID VHA711Z
3' end seq. 
>VHA711Z.Seq
NNNNNNNNNNCCGTNATCATTGCCATTTTGAATGATGGTACCATGTTAACAATCTTTAAA
GATCGTGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATG
GCACTTTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCAT
GATGGTACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGT
GGTCTCATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGT
CAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCT
CAAATTGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTT
TCCGATAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGG
GCTGTTTGTGCTTGGA
Length of 3' end seq. 496
Connected seq. ID VHA711P
Connected seq. 
>VHA711P.Seq
ATTTCATTCAACAATTACTTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATT
CATTTAAATAAATAAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCC
CAATATTTATTTTTAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAA-----
-----CCGTNATCATTGCCATTTTGAATGATGGTACCATGTTAACAATCTTTAAAGATCG
TGTAAGAGCTAGAAATGAACCAGATCAATGGAATCTTTTCGAAGTATTCACTATGGCACT
TTGTTATGGTTTCTATTTAGTAGGTTCAACCATTGTATTCTTTGCAATCATTCATGATGG
TACTTGGTTCCATGATGCTATCAATCTTCGTATCTTAACCGATAATGAACTTCGTGGTCT
CATCTATCTTCAAGTCTCTATCTCTGGTCTTGCAACTATTTTCGTATCACGTAGTCAAGG
TTTCTCTTACTTTGAACGTCCAGGTAATCTTGTAATCTTTGCTTTCGTTATGTCTCAAAT
TGTTGCTACCTTTATTGGTGTCTATGGTTTCCGTGGTTATCCACATGATTCCTTTTCCGA
TAATCCAGATTATCCAGTACATGGTACAAATTTCCAAGGTTGTGGTTGGGGTTGGGCTGT
TTGTGCTTGGA
Length of connected seq. 661
Full length Seq ID -
Full length Seq. -
Length of full length seq. -