>VHA688 (VHA688Q) /CSM/VH/VHA6-D/VHA688Q.Seq.d/
TTTATTGTTATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGT
ATTAGTGGCAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATA
TAAAGATTATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAAC
AGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATA
CACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTA
TAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATT
TGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGA
TTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAA
AGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGC
TGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCC
AGATAAAGTTAAAGTTGATCTTATTTTATCTTTAGCXXXXXXXXXX

lll*kf*LSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGFEQPT
GLARPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQEYPPF
ASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANRLLEA
DKSLNAIDIIKSSMERYSFPDKVKVDLILSL---

Frame A:
fivieilik*kkrndnsfkgisgngifiwylpck*fssri*rlfirtrihtc*fwi*ttn
rfssstkeeist*ikssttih*rssntftt**siyr*r*l**cssmfgtyc*nlsristi
cklw*kcnpfyn*ilsrsw*l*fif*ickssy*in**sr*r*t*kyc*ngs*fck*iigs
**kfkcy*yn*vingki*fsr*s*s*syfif---


Frame B:
lll*kf*LSKKNEMTILSKVLVATGFLYGIYHVNNLVQEYKDYSLEQGYTLADFGFEQPT
GLARPQKKKSARESNQVQQYTEEVQILSQRSKVFIDKGDYNSALPCLERIVEISQEYPPF
ASYGRNAILFIIKFSQEAGDYDLYSKYAKVLIESIDNPDKGELESIAKMVADFANRLLEA
DKSLNAIDIIKSSMERYSFPDKVKVDLILSL---


Frame C:
ycyrnfn*vkktk*qffqry*wqrdfymvftm*ii*fknikiih*nkdthllildlnnqq
v*lvhkrrnqhvnqikynntlkkfkyfhnvvkyl*ikviiivlfhvwnvllkslknihhl
qvmvemqsfl*lnslkklvimiyilnmqkfllnqliiqikvnlkvllkw*lilqidywkl
ikv*mlli*lshqwkdivfqiklklilfyl*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA688 (VHA688Q) /CSM/VH/VHA6-D/VHA688Q.Seq.d/                       1213   0.0
CFJ116 (CFJ116Q) /CSM/CF/CFJ1-A/CFJ116Q.Seq.d/                       1197   0.0
SFH647 (SFH647Q) /CSM/SF/SFH6-B/SFH647Q.Seq.d/                       1142   0.0
VFO782 (VFO782Q) /CSM/VF/VFO7-D/VFO782Q.Seq.d/                       1120   0.0
CHE433 (CHE433Q) /CSM/CH/CHE4-B/CHE433Q.Seq.d/                       1120   0.0
AFL783 (AFL783Q) /CSM/AF/AFL7-D/AFL783Q.Seq.d/                       1108   0.0
VFI305 (VFI305Q) /CSM/VF/VFI3-A/VFI305Q.Seq.d/                       1090   0.0
VFO882 (VFO882Q) /CSM/VF/VFO8-D/VFO882Q.Seq.d/                       1049   0.0
VFA356 (VFA356Q) /CSM/VF/VFA3-C/VFA356Q.Seq.d/                        977   0.0
VFB292 (VFB292Q) /CSM/VF/VFB2-D/VFB292Q.Seq.d/                        872   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CO174530|CO174530.1 NDL1_44_C08.g1_A029 Needles control Pinus taeda cDNA clone NDL1_44_C08_A029 5', mRNA sequence.    48   0.30   1
CO174449|CO174449.1 NDL1_44_C08.b1_A029 Needles control Pinus taeda cDNA clone NDL1_44_C08_A029 3', mRNA sequence.    48   0.30   1
EJ695930|EJ695930.1 1092956018109 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001833897 5', genomic survey sequence.    48   0.30   1
EJ649015|EJ649015.1 1092953003802 Global-Ocean-Sampling_GS-30-02-01-1P0-1P3KB marine metagenome genomic clone 1061001833897 3', genomic survey sequence.    48   0.30   1
CC195284|CC195284.1 CH261-111J7 CH261 Gallus gallus genomic clone CH261-111J7, DNA sequence.    48   0.30   1
AC148265|AC148265.2 Callithrix jacchus clone CH259-339H5, WORKING DRAFT SEQUENCE, 9 ordered pieces.    32   0.63   2
AC149840|AC149840.2 Callithrix jacchus clone CH259-372D20, WORKING DRAFT SEQUENCE, 5 ordered pieces.    32   0.64   2
AC114941|AC114941.2 Homo sapiens chromosome 5 clone CTD-2287M17, complete sequence.    34   0.64   2
CU302272|CU302272.2 Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH242-269M20.    46   1.2    1
AC091571|AC091571.2 Homo sapiens chromosome 11 clone RP11-440G10 map 11, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46   1.2    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008955_2727(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    38   0.29
CP001013_1954(CP001013|pid:none) Leptothrix cholodnii SP-6, comp...    36   0.84
AM502243_207(AM502243|pid:none) Leishmania infantum chromosome 25.     36   1.1
FJ219211_1(FJ219211|pid:none) Drosophila yakuba strain yak non-c...    35   2.4
CP001357_1583(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    34   3.2
CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    34   4.2
AE014186_184(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.2
CP001032_4025(CP001032|pid:none) Opitutus terrae PB90-1, complet...    34   4.2
CT573071_1526(CT573071|pid:none) Kuenenia stuttgartiensis genome...    34   4.2
BX908798_1384(BX908798|pid:none) Parachlamydia-related symbiont ...    34   4.2

 psg: 0.83  gvh: 0.51  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VHA688 is cyt

>VHA688F.Seq
TTTATTGTTATAGAAATTTTAATTAAGTAAAAAAAACGAAATGACAATTCTTTCAAAGGT
ATTAGTGGCAACGGGATTTTTATATGGTATTTACCATGTAAATAATTTAGTTCAAGAATA
TAAAGATTATTCATTAGAACAAGGATACACACTTGCTGATTTTGGATTTGAACAACCAAC
AGGTTTAGCTCGTCCACAAAAGAAGAAATCAGCACGTGAATCAAATCAAGTACAACAATA
CACTGAAGAAGTTCAAATACTTTCACAACGTAGTAAAGTATTTATAGATAAAGGTGATTA
TAATAGTGCTCTTCCATGTTTGGAACGTATTGTTGAAATCTCTCAAGAATATCCACCATT
TGCAAGTTATGGTAGAAATGCAATCCTTTTTATAATTAAATTCTCTCAAGAAGCTGGTGA
TTATGATTTATATTCTAAATATGCAAAAGTTCTTATTGAATCAATTGATAATCCAGATAA
AGGTGAACTTGAAAGTATTGCTAAAATGGTAGCTGATTTTGCAAATAGATTATTGGAAGC
TGATAAAAGTTTAAATGCTATTGATATAATTAAGTCATCAATGGAAAGATATAGTTTTCC
AGATAAAGTTAAAGTTGATCTTATTTTATCTTTAGCNNNNNNNNNN