VHA663
Library VH
(Link to library)
Clone ID VHA663
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11103-1
Original site URL
Representative seq. ID VHA663P
(Link to Original site)
Representative DNA sequence
>VHA663 (VHA663Q) /CSM/VH/VHA6-C/VHA663Q.Seq.d/
AACTACTTTATTTATTTTTTTATTTTATTTCTTTTTTTTTTTCTCAAAAAAAAAGAAATA
ANGAAATAATTAATATCTNCNTATTTTATAGATNTCATTNTTAAAAAAAAAAXXXXXXXX
XXATTCAATGAACCATACACTACCATCATTAGAGAGGCAATCGTCAAACGTTACTCTTAC
CTTCCATTATGGTATACCACTTTCTATCAAAATACACTCAATGGTGCTCCAGTTATGAGA
CCACTTTGGGTTCAATATCCAAAAGAAGCCAATCTCTTTGATGTTGATGATCATTATTTA
ATTGGTGATTCACTTTTAGTTAAACCAGTCACTCAACAATCTTGTAAAACTATGAAAGTC
CTCTTACCAGGCCAAAGTGTCAATGAAATTTGGTATGATGTTGATACTGAGAAACCAATC
AATGCTGGTGTCATCGAAATTGATACTCCTTTAGAAAAGATTCCAGTTTATCAACGTGGT
GGTTCAATCATTTCAAAGAAAGAAAGAGTTCGTAGAAGTACCTATCAAATGAGAGATGAT
CCATACACTATTCGTATCGCTTTGGACTCTTCAAAATCTGCTCAAGGTCAATTATACATT
GATGATGAACACTCTTTTGATTATAAAAAAGGTAAATTCCTCTACAGACAATTCACTTTC
AAAGATAATGTTCTCTCATTTTCTGATGCCTCAA
sequence update 2002.10.25
Translated Amino Acid sequence
nyfiyffilflffflkkkeixk*LISXYFIDXIXKKK---

---FNEPYTTIIREAIVKRYSYLPLWYTTFYQNTLNGAPVMRPLWVQYPKEANLFDVDDH
YLIGDSLLVKPVTQQSCKTMKVLLPGQSVNEIWYDVDTEKPINAGVIEIDTPLEKIPVYQ
RGGSIISKKERVRRSTYQMRDDPYTIRIALDSSKSAQGQLYIDDEHSFDYKKGKFLYRQF
TFKDNVLSFSDAS


Translated Amino Acid sequence (All Frames)
Frame A:
nyfiyffilflffflkkkeixk*LISXYFIDXIXKKK---

---iq*tihyhh*rgnrqtlllpsimvyhflskytqwcssyettlgsiskrsqsl*c**s
lfnw*ftfs*tshstil*nyespltrpkcq*nlv*c*y*etnqcwchrn*ysfrkdssls
twwfnhfkerkss*kylsner*sihysyrfglfkicsrsiih***tlf*l*kr*iplqti
hfqr*cslif*cl

Frame B:
ttlfiflfyfffffskkkk*xnn*ylxil*xsxlkkk---

---FNEPYTTIIREAIVKRYSYLPLWYTTFYQNTLNGAPVMRPLWVQYPKEANLFDVDDH
YLIGDSLLVKPVTQQSCKTMKVLLPGQSVNEIWYDVDTEKPINAGVIEIDTPLEKIPVYQ
RGGSIISKKERVRRSTYQMRDDPYTIRIALDSSKSAQGQLYIDDEHSFDYKKGKFLYRQF
TFKDNVLSFSDAS

Frame C:
llylffyfisfffsqkkrnxeiinixxfyrxhx*kk---

---smnhtlpslerqssnvtltfhygiplsikihsmvlql*dhfgfniqkkpislmlmii
i*lvihf*lnqslnnlvkl*kssyqakvsmkfgmmlilrnqsmlvssklill*krfqfin
vvvqsfqrkkefvevpik*emihtlfvslwtlqnllkvnytlmmntlliikkvnsstdns
lskimfshflmpq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA663 (VHA663Q) /CSM/VH/VHA6-C/VHA663Q.Seq.d/ 1134 0.0
AHK742 (AHK742Q) /CSM/AH/AHK7-B/AHK742Q.Seq.d/ 1134 0.0
AHD482 (AHD482Q) /CSM/AH/AHD4-D/AHD482Q.Seq.d/ 1122 0.0
AHD515 (AHD515Q) /CSM/AH/AHD5-A/AHD515Q.Seq.d/ 1120 0.0
AHL640 (AHL640Q) /CSM/AH/AHL6-B/AHL640Q.Seq.d/ 1114 0.0
AHL770 (AHL770Q) /CSM/AH/AHL7-C/AHL770Q.Seq.d/ 1112 0.0
AHN239 (AHN239Q) /CSM/AH/AHN2-B/AHN239Q.Seq.d/ 1094 0.0
VHB376 (VHB376Q) /CSM/VH/VHB3-D/VHB376Q.Seq.d/ 1092 0.0
SHK312 (SHK312Q) /CSM/SH/SHK3-A/SHK312Q.Seq.d/ 1086 0.0
AHA251 (AHA251Q) /CSM/AH/AHA2-C/AHA251Q.Seq.d/ 1070 0.0

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U72236|U72236.1 Dictyostelium discoideum ModA (modA) gene, complete cds. 1134 0.0 1
DV771667|DV771667.1 McClintock5_D06.ab1 Homarus EST library project Homarus americanus cDNA clone McClintock5_D06.ab1, mRNA sequence. 48 2e-05 3
CX994143| ENSANGP00000010269 - Anopheles gambiae. Score = 209 bits (532), Expect = 5e-53, mRNA sequence. 36 0.064 2
CX994233| ENSANGP00000010269 - Anopheles gambiae. Score = 199 bits (507), Expect = 4e-50, mRNA sequence. 36 0.065 2
CX994013| ModA - Dictyostelium discoideum. Score = 178 bits (451), Expect = 6e-44, mRNA sequence. 36 0.065 2
AC182280|AC182280.2 Bos taurus clone CH240-500D15, *** SEQUENCING IN PROGRESS ***, 40 unordered pieces. 36 0.18 2
AC111824|AC111824.4 Rattus norvegicus clone CH230-273I3, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 46 1.3 1
BZ245409|BZ245409.1 CH230-261K6.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-261K6, DNA sequence. 46 1.3 1
CK039850|CK039850.1 35766rsiceg_4824.y1 Oryza sativa cv. 93-11 tillering whole plant cDNA library Oryza sativa cDNA 5', mRNA sequence. 36 2.0 2
CL957770|CL957770.1 OsIRUA001884 Oryza sativa Express Library Oryza sativa (indica cultivar-group) genomic, genomic survey sequence. 36 2.0 2
dna update 2007. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q94502) RecName: Full=Neutral alpha-glucosidase AB; EC... 391 e-108
BC148865_1(BC148865|pid:none) Bos taurus glucosidase, alpha; neu... 179 7e-44
BC152014_1(BC152014|pid:none) Danio rerio zgc:171967, mRNA (cDNA... 177 3e-43
AK295899_1(AK295899|pid:none) Homo sapiens cDNA FLJ61290 complet... 176 5e-43
AK299819_1(AK299819|pid:none) Homo sapiens cDNA FLJ54057 complet... 176 5e-43
AF144074_1(AF144074|pid:none) Homo sapiens glucosidase II alpha ... 176 5e-43
BC017433_1(BC017433|pid:none) Homo sapiens glucosidase, alpha; n... 176 5e-43
AB173690_1(AB173690|pid:none) Macaca fascicularis brain cDNA clo... 174 2e-42
AB383744_1(AB383744|pid:none) Synthetic construct DNA, clone: pF... 174 2e-42
AF545044_1(AF545044|pid:none) Synthetic construct neutral alpha ... 173 4e-42
protein update 2009. 6.26
PSORT

psg: 0.75 gvh: 0.42 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VHA663 is cyt

5' end seq. ID VHA663F
5' end seq.
>VHA663F.Seq
AACTACTTTATTTATTTTTTTATTTTATTTCTTTTTTTTTTTCTCAAAAAAAAAGAAATA
ANGAAATAATTAATATCTNCNTATTTTATAGATNTCATTNTTAAAAAAAAAANNNNNNNN
NN
Length of 5' end seq. 122
3' end seq. ID VHA663Z
3' end seq.
>VHA663Z.Seq
NNNNNNNNNNATTCAATGAACCATACACTACCATCATTAGAGAGGCAATCGTCAAACGTT
ACTCTTACCTTCCATTATGGTATACCACTTTCTATCAAAATACACTCAATGGTGCTCCAG
TTATGAGACCACTTTGGGTTCAATATCCAAAAGAAGCCAATCTCTTTGATGTTGATGATC
ATTATTTAATTGGTGATTCACTTTTAGTTAAACCAGTCACTCAACAATCTTGTAAAACTA
TGAAAGTCCTCTTACCAGGCCAAAGTGTCAATGAAATTTGGTATGATGTTGATACTGAGA
AACCAATCAATGCTGGTGTCATCGAAATTGATACTCCTTTAGAAAAGATTCCAGTTTATC
AACGTGGTGGTTCAATCATTTCAAAGAAAGAAAGAGTTCGTAGAAGTACCTATCAAATGA
GAGATGATCCATACACTATTCGTATCGCTTTGGACTCTTCAAAATCTGCTCAAGGTCAAT
TATACATTGATGATGAACACTCTTTTGATTATAAAAAAGGTAAATTCCTCTACAGACAAT
TCACTTTCAAAGATAATGTTCTCTCATTTTCTGATGCCTCAA
Length of 3' end seq. 582
Connected seq. ID VHA663P
Connected seq.
>VHA663P.Seq
AACTACTTTATTTATTTTTTTATTTTATTTCTTTTTTTTTTTCTCAAAAAAAAAGAAATA
ANGAAATAATTAATATCTNCNTATTTTATAGATNTCATTNTTAAAAAAAAAA--------
--ATTCAATGAACCATACACTACCATCATTAGAGAGGCAATCGTCAAACGTTACTCTTAC
CTTCCATTATGGTATACCACTTTCTATCAAAATACACTCAATGGTGCTCCAGTTATGAGA
CCACTTTGGGTTCAATATCCAAAAGAAGCCAATCTCTTTGATGTTGATGATCATTATTTA
ATTGGTGATTCACTTTTAGTTAAACCAGTCACTCAACAATCTTGTAAAACTATGAAAGTC
CTCTTACCAGGCCAAAGTGTCAATGAAATTTGGTATGATGTTGATACTGAGAAACCAATC
AATGCTGGTGTCATCGAAATTGATACTCCTTTAGAAAAGATTCCAGTTTATCAACGTGGT
GGTTCAATCATTTCAAAGAAAGAAAGAGTTCGTAGAAGTACCTATCAAATGAGAGATGAT
CCATACACTATTCGTATCGCTTTGGACTCTTCAAAATCTGCTCAAGGTCAATTATACATT
GATGATGAACACTCTTTTGATTATAAAAAAGGTAAATTCCTCTACAGACAATTCACTTTC
AAAGATAATGTTCTCTCATTTTCTGATGCCTCAA
Length of connected seq. 684
Full length Seq ID -
Full length Seq. -
Length of full length seq. -