VHA633
Library VH
(Link to library)
Clone ID VHA633
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>VHA633 (VHA633Q) /CSM/VH/VHA6-B/VHA633Q.Seq.d/
AGCATCGAGTCGGCCTTGTTGGCTACTGGAACTCTCGAGTGCAAAAAAAGTAAAGTACAA
AATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGGACCGTCGTGAAAATATCAG
AAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCACTTTATCAGATTCTTTAAT
CCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGGTGATATGAGATATATGTCATGTCG
TGCTGATGAACAAGAGCGTGGTATCACCATTAAATCTTCATCTGTATCACTTCACTTCGA
AATGCCGAAGGAAGACAAATTACCAGCTGGTTGTACTTCACACGAATTTTTAATCAATCT
TATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGAAGTAACTGCTGCCCTCCGTGTTAC
TGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGGTGTTTGCGTACAAACCGAAACTGT
ATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGTCTTATTCGTCAACAAAGTCGATCG
TTTCTTATTAGXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
ASSRPCWLLELSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLI
QRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINL
IDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDR
FLL---


Translated Amino Acid sequence (All Frames)
Frame A:
siesallatgtleckkskvqng*fhnrsnschygps*kyqkyvcycscrsr*nhfirffn
pkswyycr*sfw*yeiyvmsc**trawyhh*ificitslrnaegrqitswlyftrifnqs
yrfprsr*fqfrsnccppcy*wcfsryrlrrrclrtnrncitssrr*tyqtslirqqsrs
fli---


Frame B:
ASSRPCWLLELSSAKKVKYKMVNFTIDQIRAIMDRRENIRNMSVIAHVDHGKTTLSDSLI
QRAGIIADKVSGDMRYMSCRADEQERGITIKSSSVSLHFEMPKEDKLPAGCTSHEFLINL
IDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCVQTETVLRQAVAERIKPVLFVNKVDR
FLL---


Frame C:
hrvglvgywnsrvqkk*stkwlisqsikfvplwtvvkiseicllllmsitvkplyqil*s
kelvllpikflvi*dichvvlmnksvvsplnlhlyhftskcrrktnyqlvvlhtnf*sil
sipqvtlisvqk*llpsvllmvl*slsiaskvfaykpklyyvkpslnvsnqsysstksiv
sy---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA633 (VHA633Q) /CSM/VH/VHA6-B/VHA633Q.Seq.d/ 1051 0.0
VHG496 (VHG496Q) /CSM/VH/VHG4-D/VHG496Q.Seq.d/ 1035 0.0
VHP213 (VHP213Q) /CSM/VH/VHP2-A/VHP213Q.Seq.d/ 1027 0.0
VHP618 (VHP618Q) /CSM/VH/VHP6-A/VHP618Q.Seq.d/ 1025 0.0
VHL637 (VHL637Q) /CSM/VH/VHL6-B/VHL637Q.Seq.d/ 1021 0.0
VHF335 (VHF335Q) /CSM/VH/VHF3-B/VHF335Q.Seq.d/ 1021 0.0
VHN112 (VHN112Q) /CSM/VH/VHN1-A/VHN112Q.Seq.d/ 1015 0.0
VHJ802 (VHJ802Q) /CSM/VH/VHJ8-A/VHJ802Q.Seq.d/ 999 0.0
VHI860 (VHI860Q) /CSM/VH/VHI8-C/VHI860Q.Seq.d/ 999 0.0
VHF356 (VHF356Q) /CSM/VH/VHF3-C/VHF356Q.Seq.d/ 999 0.0

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 983 0.0 1
CX155337|CX155337.1 TfEST072F03 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 1e-34 4
CX154324|CX154324.1 TfEST033C12 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 2e-34 4
CX154971|CX154971.1 TfEST089A07 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 6e-34 4
CX154356|CX154356.1 TfEST029E10 Tf30924 cDNA Library Tritrichomonas foetus cDNA 5', mRNA sequence. 90 8e-34 4
DY889811|DY889811.1 CeleSEQ6761 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6761, mRNA sequence. 84 4e-33 4
DY889772|DY889772.1 CeleSEQ11980 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ11980, mRNA sequence. 84 4e-33 4
DY890935|DY890935.1 CeleSEQ7425 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ7425, mRNA sequence. 84 6e-33 4
DY887441|DY887441.1 CeleSEQ3766 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ3766, mRNA sequence. 84 6e-33 4
DY888936|DY888936.1 CeleSEQ6366 Cunninghamella elegans pBluescript (EcoRI-XhoI) Cunninghamella elegans cDNA clone CeleSEQ6366, mRNA sequence. 84 8e-33 4
dna update 2007. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM270011_29(AM270011|pid:none) Aspergillus niger contig An02c016... 235 7e-61
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro... 232 4e-60
AF248644_1(AF248644|pid:none) Filobasidiella neoformans var. neo... 231 1e-59
AY026074_1(AY026074|pid:none) Monosiga brevicollis elongation fa... 228 6e-59
(Q6FYA7) RecName: Full=Elongation factor 2; Short=EF-2;... 228 6e-59
(Q874B9) RecName: Full=Elongation factor 2; Short=EF-2;... 228 6e-59
DQ357217_1(DQ357217|pid:none) Leishmania braziliensis elongation... 227 2e-58
AM494972_26(AM494972|pid:none) Leishmania braziliensis chromosom... 227 2e-58
AY618550_1(AY618550|pid:none) Trypanosoma cruzi elongation facto... 226 2e-58
CT005272_19(CT005272|pid:none) Leishmania major strain Friedlin,... 226 2e-58
protein update 2009. 6.26
PSORT

psg: 0.57 gvh: 0.46 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
16.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VHA633 is cyt

5' end seq. ID VHA633F
5' end seq.
>VHA633F.Seq
AGCATCGAGTCGGCCTTGTTGGCTACTGGAACTCTCGAGTGCAAAAAAAGTAAAGTACAA
AATGGTTAATTTCACAATCGATCAAATTCGTGCCATTATGGACCGTCGTGAAAATATCAG
AAATATGTCTGTTATTGCTCATGTCGATCACGGTAAAACCACTTTATCAGATTCTTTAAT
CCAAAGAGCTGGTATTATTGCCGATAAAGTTTCTGGTGATATGAGATATATGTCATGTCG
TGCTGATGAACAAGAGCGTGGTATCACCATTAAATCTTCATCTGTATCACTTCACTTCGA
AATGCCGAAGGAAGACAAATTACCAGCTGGTTGTACTTCACACGAATTTTTAATCAATCT
TATCGATTCCCCAGGTCACGTTGATTTCAGTTCAGAAGTAACTGCTGCCCTCCGTGTTAC
TGATGGTGCTTTAGTCGTTATCGATTGCGTCGAAGGTGTTTGCGTACAAACCGAAACTGT
ATTACGTCAAGCCGTCGCTGAACGTATCAAACCAGTCTTATTCGTCAACAAAGTCGATCG
TTTCTTATTAGNNNNNNNNNN
Length of 5' end seq. 561
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -