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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA617
Library VH
(Link to library)
Clone ID VHA617
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID VHA617P
(Link to Original site)
Representative DNA sequence 
>VHA617 (VHA617Q) /CSM/VH/VHA6-A/VHA617Q.Seq.d/
ATTAAAACTCTGACGCGTATTGAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTAC
CTTCTGTAAGGAGTGCCCGAATCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCA
CCTAGAATGGGACCCGAAAGGTTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAAC
TCTGATGGAGGCTTGTCGCAATGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGG
GCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGC
TGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAAT
GCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGA
TTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACAXXXXXXXXXXAGAAACGCAAACC
AAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTC
AACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTG
GGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTAT
CAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTT
TCCATTAGTTCTTAGTTACCATAACCTAATAAGATTAAAATGTCCACAAATAAAGTAAAC
AAAGAAAGAACTTTCCTTGCTGTTAAACCAGACGGTGTTGCTCGTGGTTTAGTTGGTGAA
ATCATCGCCAGATACGAAAAGAAAGGTTTCGTTTTAGTTGGTTTAAAACAATTAGTTCCA
ACCAAAGACTTAGCTGAATCTCACTATGCTGAACACAAAGAAAGACCATTCTTCGGTGGT
TTAGTCTCATTCATTACCTCTGGTCCAGTCGTTGCTATGGTCTTCGAAGGTAAAGGTGTT
GTTGCCTCTGCCCGTTTAATGATCGGTGTTACCAACCCATTAGCCTCAGCCCCAGGTTCA
ATTCGTGGTGATTTCGGTGTTGATGTTGGTAGAAACATCATCCACGGTTCTGATTCAGTT
GAATCTGCCAACAGAGAAATTGCTTTATGGTTCAAACCAGAAGAATTATTAACTGAAGTT
AAACCAAACCCAAATTTATACGAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
*nsday*kkeyskrs*lrlpsvrsarimrtlfrkdlrlst*ngtrkvvnya*grrsqgkl
*wrlvamltckslv*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*c
sqlilkl*tggyhfnslnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*HSL
IDTTKGVSSLR---

---KRKPNALECECCR*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrst
lrl*ttik*trccklpssvqlrgveafplvlsyhnlirlkcpqik*tkkelslllnqtvl
lvv*lvksspdtkrkvsf*lv*nn*fqpkt*lnltmlntkkdhssvv*shslplvqsllw
sskvkvllplpv**svlpth*pqpqvqfvvisvlmlvetsstvliqlnlptekllygsnq
kny*lklnqtqiytn
Translated Amino Acid sequence (All Frames) 
Frame A:
iktltrierkntpkdrnygyll*gvpes*elcfericg*aprmgperl*tmpeegevrgn
sdgglsqc*ranrlsnlgigakd*snnlvagsfrsfpqdswssilvpsckdnd*qfrgrn
als*fsnservgiilihligf*n*iahvq*kigalsgpflvsrtgdvg*tkywdktsnih
**ipqkvlvh*d---

---rnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaq
lfdcrrlsnelgavsfrvafsyeglrlfh*flvtit**d*nvhk*skqrknfpcc*trrc
cswfsw*nhrqirkerfrfswfktissnqrls*islc*tqrktilrwfslihylwssrcy
glrr*rccclcpfndrcyqpislsprfnsw*frc*cw*khhprf*fs*icqqrncfmvqt
rriin*s*tkpkfiri

Frame B:
lkl*rvlkerilqkivttvtfckecpnhensvskgfavehlewdpkgcelclrkaksget
lmeacrnadvqiacltwv*grktnrtt**lvpsevslriagavf*fhlvktmissfggvm
lsadsqtlngwvsf*ft*ldfkiklhmcnek*ellvghfw*aelamwvepnigirrltft
nryhkrc*fikt---

---etqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvpln
ssivddyqmn*vl*ase*rsvtrg*gfsiss*lp*pnkikmstnkvnkertflavkpdgv
arglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehkerpffgglvsfitsgpvvam
vfegkgvvasarlmigvtnplasapgsirgdfgvdvgrniihgsdsvesanreialwfkp
eelltevkpnpnlye*

Frame C:
*nsday*kkeyskrs*lrlpsvrsarimrtlfrkdlrlst*ngtrkvvnya*grrsqgkl
*wrlvamltckslv*lgyrgerlieqpsswflpkfpsg*leqysssil*rq*lavsga*c
sqlilkl*tggyhfnslnwilklnctcamknrss*waifgkqnwrcglnqilg*dv*HSL
IDTTKGVSSLR---

---KRKPNALECECCR*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrst
lrl*ttik*trccklpssvqlrgveafplvlsyhnlirlkcpqik*tkkelslllnqtvl
lvv*lvksspdtkrkvsf*lv*nn*fqpkt*lnltmlntkkdhssvv*shslplvqsllw
sskvkvllplpv**svlpth*pqpqvqfvvisvlmlvetsstvliqlnlptekllygsnq
kny*lklnqtqiytn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA617 (VHA617Q) /CSM/VH/VHA6-A/VHA617Q.Seq.d/                       2611   0.0
VHB850 (VHB850Q) /CSM/VH/VHB8-C/VHB850Q.Seq.d/                       1461   0.0
VHH677 (VHH677Q) /CSM/VH/VHH6-D/VHH677Q.Seq.d/                       1144   0.0
AHF142 (AHF142Q) /CSM/AH/AHF1-B/AHF142Q.Seq.d/                       1144   0.0
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/                       1136   0.0
SHE696 (SHE696Q) /CSM/SH/SHE6-D/SHE696Q.Seq.d/                       1132   0.0
VHK158 (VHK158Q) /CSM/VH/VHK1-C/VHK158Q.Seq.d/                       1108   0.0
VHA679 (VHA679Q) /CSM/VH/VHA6-D/VHA679Q.Seq.d/                       1106   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1144   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1128   0.0    1
DQ340385|DQ340385.1 Dictyostelium citrinum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.  1096   0.0    1
DQ340386|DQ340386.1 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence.   636   0.0    6
A32505|A32505.1 D.discoideum NDP kinase gene.                     963   0.0    1
J05457|J05457.1 D.discoideum nucleoside diphosphate kinase Gip17 mRNA, complete cds.   963   0.0    1
L23067|L23067.1 Dictyostelium discoideum nucleoside diphosphate kinase (ndkC) gene, complete cds.   551   0.0    3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   551   0.0    6
DQ340387|DQ340387.1 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence.   303   e-157  6
EC761518|EC761518.1 PSE00006555 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   299   e-135  5
dna update 2007. 3.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22887) RecName: Full=Nucleoside diphosphate kinase, cytosolic;...   308   3e-82
NRL(1NDC) Nucleoside diphosphate kinase (EC 2.7.4.6) complexed W...   298   2e-79
NRL(1NDK) Nucleoside diphosphate kinase (EC 2.7.4.6) mutant with...   290   6e-77
(B0C4I0) RecName: Full=Nucleoside diphosphate kinase;          S...   219   2e-55
(P50590) RecName: Full=Nucleoside diphosphate kinase;          S...   209   2e-52
(Q7NMQ5) RecName: Full=Nucleoside diphosphate kinase;          S...   208   3e-52
CT978603_2377(CT978603|pid:none) Synechococcus sp. RCC307 genomi...   204   4e-51
CP001037_5754(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...   204   6e-51
(Q0I6J3) RecName: Full=Nucleoside diphosphate kinase;          S...   201   5e-50
(Q3AVV5) RecName: Full=Nucleoside diphosphate kinase;          S...   200   1e-49
protein update 2009. 6.26
PSORT 

 psg: 0.49  gvh: 0.22  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VHA617 is nuc
5' end seq. ID VHA617F
5' end seq. 
>VHA617F.Seq
ATTAAAACTCTGACGCGTATTGAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTAC
CTTCTGTAAGGAGTGCCCGAATCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCA
CCTAGAATGGGACCCGAAAGGTTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAAC
TCTGATGGAGGCTTGTCGCAATGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGG
GCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGC
TGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAAT
GCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGA
TTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACANNNNNNNNNN
Length of 5' end seq. 587
3' end seq. ID VHA617Z
3' end seq. 
>VHA617Z.Seq
NNNNNNNNNNAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAG
GTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCA
GTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCA
ACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTT
CAGTTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTAGTTACCATAACCTAATAAGATTA
AAATGTCCACAAATAAAGTAAACAAAGAAAGAACTTTCCTTGCTGTTAAACCAGACGGTG
TTGCTCGTGGTTTAGTTGGTGAAATCATCGCCAGATACGAAAAGAAAGGTTTCGTTTTAG
TTGGTTTAAAACAATTAGTTCCAACCAAAGACTTAGCTGAATCTCACTATGCTGAACACA
AAGAAAGACCATTCTTCGGTGGTTTAGTCTCATTCATTACCTCTGGTCCAGTCGTTGCTA
TGGTCTTCGAAGGTAAAGGTGTTGTTGCCTCTGCCCGTTTAATGATCGGTGTTACCAACC
CATTAGCCTCAGCCCCAGGTTCAATTCGTGGTGATTTCGGTGTTGATGTTGGTAGAAACA
TCATCCACGGTTCTGATTCAGTTGAATCTGCCAACAGAGAAATTGCTTTATGGTTCAAAC
CAGAAGAATTATTAACTGAAGTTAAACCAAACCCAAATTTATACGAATAA
Length of 3' end seq. 770
Connected seq. ID VHA617P
Connected seq. 
>VHA617P.Seq
ATTAAAACTCTGACGCGTATTGAAAGAAAGAATACTCCAAAAGATCGTAACTACGGTTAC
CTTCTGTAAGGAGTGCCCGAATCATGAGAACTCTGTTTCGAAAGGATTTGCGGTTGAGCA
CCTAGAATGGGACCCGAAAGGTTGTGAACTATGCCTGAGGAAGGCGAAGTCAGGGGAAAC
TCTGATGGAGGCTTGTCGCAATGCTGACGTGCAAATCGCTTGTCTAACTTGGGTATAGGG
GCGAAAGACTAATCGAACAACCTAGTAGCTGGTTCCTTCCGAAGTTTCCCTCAGGATAGC
TGGAGCAGTATTCTAGTTCCATCTTGTAAAGACAATGATTAGCAGTTTCGGGGGCGTAAT
GCTCTCAGCTGATTCTCAAACTCTGAACGGGTGGGTATCATTTTAATTCACTTAATTGGA
TTTTAAAATTAAATTGCACATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTG
GTAAGCAGAACTGGCGATGTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCAC
TAATAGATACCACAAAAGGTGTTAGTTCATTAAGACA----------AGAAACGCAAACC
AAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTC
AACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTG
GGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTAT
CAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTT
TCCATTAGTTCTTAGTTACCATAACCTAATAAGATTAAAATGTCCACAAATAAAGTAAAC
AAAGAAAGAACTTTCCTTGCTGTTAAACCAGACGGTGTTGCTCGTGGTTTAGTTGGTGAA
ATCATCGCCAGATACGAAAAGAAAGGTTTCGTTTTAGTTGGTTTAAAACAATTAGTTCCA
ACCAAAGACTTAGCTGAATCTCACTATGCTGAACACAAAGAAAGACCATTCTTCGGTGGT
TTAGTCTCATTCATTACCTCTGGTCCAGTCGTTGCTATGGTCTTCGAAGGTAAAGGTGTT
GTTGCCTCTGCCCGTTTAATGATCGGTGTTACCAACCCATTAGCCTCAGCCCCAGGTTCA
ATTCGTGGTGATTTCGGTGTTGATGTTGGTAGAAACATCATCCACGGTTCTGATTCAGTT
GAATCTGCCAACAGAGAAATTGCTTTATGGTTCAAACCAGAAGAATTATTAACTGAAGTT
AAACCAAACCCAAATTTATACGAATAA
Length of connected seq. 1337
Full length Seq ID -
Full length Seq. -
Length of full length seq. -