>VHA612 (VHA612Q) /CSM/VH/VHA6-A/VHA612Q.Seq.d/
XXXXXXXXXXTTANGATGTCGCCCTCCACNCANGATGCCATCCACAGANGTGGTGGTCAN
ATCATCCCAAGTGCTCGTCGTGTACTNTATGCTGCTGAATTAANTGCCTCCCCAACTCTG
TTAGAACCANTGGTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA
CTCTGTACTCAATCGTNGTANAGGTATTGTTANTGGTGAAGAACGTCGTATCGGTTCCCC
ATTATTNTCTGTCAAAGNTCATTTGCCAGTATTAGAATCCTTCGGTTTCNCCGCTGATTT
ACGTTCCCACACTGCCGGGCAAGCTTTCCCACAATGTGTNTTCGATCATTGGGCTTCAAT
TGGTGTTGTCAACAAANATAANAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA
AGGTTTAGCCCCAGAAATCCCA

---xcrppxxmpstxvvvxssqvlvvyxmlln*xppqlc*NXWYLVEITAPENAIGGIYS
VLNRXXGIVXGEERRIGSPLXSVKXHLPVLESFGFXADLRSHTAGQAFPQCVFDHWASIG
VVNKXXKATEVALATRKRKGLAPEIP

Frame A:
---xdvalhxxchpqxwwsxhpkcssctxcc*ixclpnsvrtxgt**kllpqktllvvft
lysivvxvllxvknvvsvphyxlskxicqy*npsvspliyvptlpgklshnvxsiiglql
vlstxixkplksl*pperekv*pqks


Frame B:
---xmspstxdaihrxggxiipsarrvlyaaelxasptllepxvlsrnycprkrywwyll
ctqsxxrycxw*rtsyrfpiixcqxsfasirilrfxr*ftfphcrasfptmcxrslgfnw
ccqqx*xsh*srfshqkekrfsprnp


Frame C:
---xcrppxxmpstxvvvxssqvlvvyxmlln*xppqlc*NXWYLVEITAPENAIGGIYS
VLNRXXGIVXGEERRIGSPLXSVKXHLPVLESFGFXADLRSHTAGQAFPQCVFDHWASIG
VVNKXXKATEVALATRKRKGLAPEIP

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA612 (VHA612Q) /CSM/VH/VHA6-A/VHA612Q.Seq.d/                        755   0.0
VHC172 (VHC172Q) /CSM/VH/VHC1-C/VHC172Q.Seq.d/                        694   0.0
VHN348 (VHN348Q) /CSM/VH/VHN3-B/VHN348Q.Seq.d/                        684   0.0
VHQ226 (VHQ226Q) /CSM/VH/VHQ2-B/VHQ226Q.Seq.d/                        680   0.0
VHM835 (VHM835Q) /CSM/VH/VHM8-B/VHM835Q.Seq.d/                        680   0.0
VHM760 (VHM760Q) /CSM/VH/VHM7-C/VHM760Q.Seq.d/                        680   0.0
VHM554 (VHM554Q) /CSM/VH/VHM5-C/VHM554Q.Seq.d/                        680   0.0
VHM537 (VHM537Q) /CSM/VH/VHM5-B/VHM537Q.Seq.d/                        680   0.0
VHL753 (VHL753Q) /CSM/VH/VHL7-C/VHL753Q.Seq.d/                        678   0.0
VHP166 (VHP166Q) /CSM/VH/VHP1-C/VHP166Q.Seq.d/                        674   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds.   511   e-180  2
EC762230|EC762230.1 PSE00004533 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   105   1e-18  1
EC760858|EC760858.1 PSE00006557 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   105   1e-18  1
EC760375|EC760375.1 PSE00007370 rw_mgpallid Polysphondylium pallidum cDNA, mRNA sequence.   105   1e-18  1
BP026750|BP026750.1 Ciona intestinalis cDNA, clone:cits45g14, 5' end, single read.    80   4e-13  2
BW503370|BW503370.1 Ciona intestinalis early juvenile cDNA, clone: cijm001h15.    80   5e-13  2
BP013888|BP013888.1 Ciona intestinalis cDNA, clone:ciad59l12, 5' end, single read.    80   5e-13  2
AV906909|AV906909.1 Ciona intestinalis cDNA, clone:rciad67l12, 3' end, single read.    80   5e-13  2
BW270068|BW270068.1 Ciona intestinalis cDNA, clone:cign055h19, 5' end, single read.    80   5e-13  2
BW505135|BW505135.1 Ciona intestinalis early juvenile cDNA, clone: cijm007k11.    80   5e-13  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ848932_1(DQ848932|pid:none) Scophthalmus maximus clone kbc101 ...   112   9e-35
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi...   114   2e-34
(A5DI11) RecName: Full=Elongation factor 2;          Short=EF-2;      119   2e-34
(Q06193) RecName: Full=Elongation factor 2;          Short=EF-2;...   121   4e-34
CP000881_15(CP000881|pid:none) Hemiselmis andersenii chromosome ...   120   6e-34
(Q874B9) RecName: Full=Elongation factor 2;          Short=EF-2;...   119   6e-34
AF083031_87(AF083031|pid:none) Guillardia theta nucleomorph chro...   115   5e-33
(O23755) RecName: Full=Elongation factor 2;          Short=EF-2;...   111   8e-33
AM494972_25(AM494972|pid:none) Leishmania braziliensis chromosom...   113   2e-32
(Q6BJ25) RecName: Full=Elongation factor 2;          Short=EF-2;...   112   2e-32

 psg: 0.75  gvh: 0.49  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHA612 is cyt

>VHA612Z.Seq
NNNNNNNNNNTTANGATGTCGCCCTCCACNCANGATGCCATCCACAGANGTGGTGGTCAN
ATCATCCCAAGTGCTCGTCGTGTACTNTATGCTGCTGAATTAANTGCCTCCCCAACTCTG
TTAGAACCANTGGTACTTAGTAGAAATTACTGCCCCAGAAAACGCTATTGGTGGTATTTA
CTCTGTACTCAATCGTNGTANAGGTATTGTTANTGGTGAAGAACGTCGTATCGGTTCCCC
ATTATTNTCTGTCAAAGNTCATTTGCCAGTATTAGAATCCTTCGGTTTCNCCGCTGATTT
ACGTTCCCACACTGCCGGGCAAGCTTTCCCACAATGTGTNTTCGATCATTGGGCTTCAAT
TGGTGTTGTCAACAAANATAANAAAGCCACTGAAGTCGCTTTAGCCACCAGAAAGAGAAA
AGGTTTAGCCCCAGAAATCCCA