VHA609
Library VH
(Link to library)
Clone ID VHA609
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15091-1
Original site URL
Representative seq. ID VHA609P
(Link to Original site)
Representative DNA sequence
>VHA609 (VHA609Q) /CSM/VH/VHA6-A/VHA609Q.Seq.d/
ATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCACTGTGTCAAGT
GCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCAAGTCTTTTCG
CACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAAACCAAACCAG
TTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAATGTTCATGTG
GTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGTGGTGAGAAAA
AATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGTCTAGAAATAA
AGATAAACCTACAAAAAAAAACCATTTAAAATGTCCCTTTATCAGGAAAAAAAAAAXXXX
XXXXXXATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCACTGTG
TCAAGTGCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCAAGTC
TTTTCGCACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAAACCA
AACCAGTTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAATGTT
CATGTGGTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGTGGTG
AGAAAAAATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGTCTAG
AAATAAAGATAAACCTACAAAAAAAAACCATTTAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
lsfiqngqhpksp*dslcqvqqthptqgypiqsw*tksfrtr*ktlrs*tirfwwsnqts
fpqesqnyqkdrtqngmfmwlqettsfkem*tfrtrw*ekikersy*dvnlf*y**SRNK
DKPTKKNHLKCPFIRKKK---

---YLLYKMVNIPKARKTHCVKCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQT
KPVFHKKAKTTKKIVLRMECSCGYKKQQVLKRCKRFELGGEKKSKNEAIKM*iyfninsl
eikinlqkkti*


Translated Amino Acid sequence (All Frames)
Frame A:
iifytkwstsqkpvrltvssatntphtrlpntklvnqvfshkvkdvtivnnqvlvvkpnq
fstrkpklpkrsysewnvhvvtrnnkf*rdvnvsnsvvrknqrtkllrckfililiv*k*
r*tykkkpfkmslyqekk---

---iifytkwstsqkpvrltvssatntphtrlpntklvnqvfshkvkdvtivnnqvlvvk
pnqfstrkpklpkrsysewnvhvvtrnnkf*rdvnvsnsvvrknqrtkllrckfililiv
*k*r*tykkkpfk

Frame B:
lsfiqngqhpksp*dslcqvqqthptqgypiqsw*tksfrtr*ktlrs*tirfwwsnqts
fpqesqnyqkdrtqngmfmwlqettsfkem*tfrtrw*ekikersy*dvnlf*y**SRNK
DKPTKKNHLKCPFIRKKK---

---lsfiqngqhpksp*dslcqvqqthptqgypiqsw*tksfrtr*ktlrs*tirfwwsn
qtsfpqesqnyqkdrtqngmfmwlqettsfkem*tfrtrw*ekikersy*dvnlf*y**s
rnkdkptkknhlk

Frame C:
yllykmvnipkarkthcvkcnkhtphkvtqykagkpslfaqgkrrydrkqsgfggqtkpv
fhkkakttkkivlrmecscgykkqqvlkrckrfelggekkskneaikm*iyfninsleik
inlqkkti*nvplsgkkk---

---YLLYKMVNIPKARKTHCVKCNKHTPHKVTQYKAGKPSLFAQGKRRYDRKQSGFGGQT
KPVFHKKAKTTKKIVLRMECSCGYKKQQVLKRCKRFELGGEKKSKNEAIKM*iyfninsl
eikinlqkkti*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA609 (VHA609Q) /CSM/VH/VHA6-A/VHA609Q.Seq.d/ 751 0.0
VSD462 (VSD462Q) /CSM/VS/VSD4-C/VSD462Q.Seq.d/ 731 0.0
VSF865 (VSF865Q) /CSM/VS/VSF8-C/VSF865Q.Seq.d/ 728 0.0
VSA741 (VSA741Q) /CSM/VS/VSA7-B/VSA741Q.Seq.d/ 728 0.0
VHE719 (VHE719Q) /CSM/VH/VHE7-A/VHE719Q.Seq.d/ 728 0.0
VFH772 (VFH772Q) /CSM/VF/VFH7-C/VFH772Q.Seq.d/ 718 0.0
VSD304 (VSD304Q) /CSM/VS/VSD3-A/VSD304Q.Seq.d/ 714 0.0
VSE433 (VSE433Q) /CSM/VS/VSE4-B/VSE433Q.Seq.d/ 710 0.0
VSC733 (VSC733Q) /CSM/VS/VSC7-B/VSC733Q.Seq.d/ 710 0.0
VSG564 (VSG564Q) /CSM/VS/VSG5-C/VSG564Q.Seq.d/ 698 0.0

own update 2002.12.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D43686|D43686.1 Candida maltosa L41P1a gene and L41Qla gene for L41 ribosomal proteins, complete cds. 98 2e-47 5
AZ927484|AZ927484.1 476.dit25d03.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dit25d03.s1, DNA sequence. 111 5e-36 3
D43687|D43687.1 Candida maltosa L41Plb gene for L41 ribosomal protein, partial cds. 98 5e-36 3
AL405129|AL405129.1 T3 end of clone AU0AA002F04 of library AU0AA from strain CBS 3082 of Saccharomyces kluyveri. 107 5e-29 3
AX073256|AX073256.1 Sequence 367 from Patent WO0102550. 90 7e-29 3
AR550522|AR550522.1 Sequence 5653 from patent US 6747137. 90 7e-29 3
BD218175|BD218175.1 Plasmid for gene expression in pichia ciferri and transformation method using the same. 98 4e-28 2
AR411835|AR411835.1 Sequence 1 from patent US 6638735. 98 4e-28 2
AF053457|AF053457.1 Pichia ciferrii ribosomal protein L41 (CYH2) gene, complete cds. 98 4e-28 2
U10398|U10398.3 Saccharomyces cerevisiae chromosome VIII cosmid 9315. 103 1e-27 2
dna update 2007. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(A8PCG3) RecName: Full=60S ribosomal protein L44; AltName: Full=... 164 3e-39
CR380953_249(CR380953|pid:none) Candida glabrata strain CBS138 c... 164 3e-39
(P02405) RecName: Full=60S ribosomal protein L42; AltName: Full=... 162 9e-39
(Q00477) RecName: Full=60S ribosomal protein L44 P; AltName: Ful... 161 3e-38
EU302556_1(EU302556|pid:none) Lineus viridis ribosomal protein r... 160 4e-38
X92517_8(X92517|pid:none) S.cerevisiae PSD1, N1696, SKO1, N1706,... 160 4e-38
CU633438_514(CU633438|pid:none) Podospora anserina genomic DNA c... 160 5e-38
(P31866) RecName: Full=60S ribosomal protein L44; AltName: Full=... 160 6e-38
(P31027) RecName: Full=60S ribosomal protein L44; AltName: Full=... 159 8e-38
(Q9UVB8) RecName: Full=60S ribosomal protein L44; AltName: Full=... 159 8e-38
protein update 2009. 6.26
PSORT

psg: 0.70 gvh: 0.22 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.42 mip: 0.19
nuc: 0.52 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for VHA609 is nuc

5' end seq. ID VHA609F
5' end seq.
>VHA609F.Seq
ATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCACTGTGTCAAGT
GCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCAAGTCTTTTCG
CACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAAACCAAACCAG
TTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAATGTTCATGTG
GTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGTGGTGAGAAAA
AATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGTCTAGAAATAA
AGATAAACCTACAAAAAAAAACCATTTAAAATGTCCCTTTATCAGGAAAAAAAAAANNNN
NNNNNN
Length of 5' end seq. 426
3' end seq. ID VHA609Z
3' end seq.
>VHA609Z.Seq
NNNNNNNNNNATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCAC
TGTGTCAAGTGCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCA
AGTCTTTTCGCACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAA
ACCAAACCAGTTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAA
TGTTCATGTGGTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGT
GGTGAGAAAAAATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGT
CTAGAAATAAAGATAAACCTACAAAAAAAAACCATTTAAAA
Length of 3' end seq. 401
Connected seq. ID VHA609P
Connected seq.
>VHA609P.Seq
ATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCACTGTGTCAAGT
GCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCAAGTCTTTTCG
CACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAAACCAAACCAG
TTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAATGTTCATGTG
GTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGTGGTGAGAAAA
AATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGTCTAGAAATAA
AGATAAACCTACAAAAAAAAACCATTTAAAATGTCCCTTTATCAGGAAAAAAAAAA----
------ATTATCTTTTATACAAAATGGTCAACATCCCAAAAGCCCGTAAGACTCACTGTG
TCAAGTGCAACAAACACACCCCACACAAGGTTACCCAATACAAAGCTGGTAAACCAAGTC
TTTTCGCACAAGGTAAAAGACGTTACGATCGTAAACAATCAGGTTTTGGTGGTCAAACCA
AACCAGTTTTCCACAAGAAAGCCAAAACTACCAAAAAGATCGTACTCAGAATGGAATGTT
CATGTGGTTACAAGAAACAACAAGTTTTAAAGAGATGTAAACGTTTCGAACTCGGTGGTG
AGAAAAAATCAAAGAACGAAGCTATTAAGATGTAAATTTATTTTAATATTAATAGTCTAG
AAATAAAGATAAACCTACAAAAAAAAACCATTTAAAA
Length of connected seq. 807
Full length Seq ID -
Full length Seq. -
Length of full length seq. -