>VHA606 (VHA606Q) /CSM/VH/VHA6-A/VHA606Q.Seq.d/
XXXXXXXXXXAAATAATAACACAATGTCAACAAGAGTACAAAAATCTGCAATTTTAAATG
AAAACATAGCCAAAGTATGGAATGTTTTACGTAATTTCGATTTCCCATCAAGAATCTTCC
CAGTAATNGAAAGTTCAATTATTGAAGGTGACTCAACACCAACCNCTGTTGGAGCCATCC
GTGTTATAAAGTGGAAAACTGGTGAAACCAATAAACAAAGATTATTAGAACT

---NNNTMSTRVQKSAILNENIAKVWNVLRNFDFPSRIFPVXESSIIEGDSTPTXVGAIR
VIKWKTGETNKQRLLE

Frame A:
---NNNTMSTRVQKSAILNENIAKVWNVLRNFDFPSRIFPVXESSIIEGDSTPTXVGAIR
VIKWKTGETNKQRLLE


Frame B:
---iitqcqqeyknlqf*mkt*pkygmfyvisishqessq*xkvqllkvtqhqpllepsv
l*sgklvkpinkdy*n


Frame C:
---**hnvnkstkicnfk*khsqsmecft*frfpiknlpsnxkfny*r*lntnxcwshpc
ykvenw*nq*tkiirt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA606 (VHA606Q) /CSM/VH/VHA6-A/VHA606Q.Seq.d/                        428   e-119
AHC765 (AHC765Q) /CSM/AH/AHC7-C/AHC765Q.Seq.d/                        404   e-112
AHH891 (AHH891Q) /CSM/AH/AHH8-D/AHH891Q.Seq.d/                        387   e-107
VSH795 (VSH795Q) /CSM/VS/VSH7-D/VSH795Q.Seq.d/                        383   e-106
VSE874 (VSE874Q) /CSM/VS/VSE8-D/VSE874Q.Seq.d/                        383   e-106
VSH527 (VSH527Q) /CSM/VS/VSH5-B/VSH527Q.Seq.d/                        379   e-104
SSD805 (SSD805Q) /CSM/SS/SSD8-A/SSD805Q.Seq.d/                        377   e-104
VSC672 (VSC672Q) /CSM/VS/VSC6-C/VSC672Q.Seq.d/                        369   e-101
VSD151 (VSD151Q) /CSM/VS/VSD1-C/VSD151Q.Seq.d/                        365   e-100
VSB579 (VSB579Q) /CSM/VS/VSB5-D/VSB579Q.Seq.d/                        363   e-100

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   287   e-101  2
BX208087|BX208087.1 Danio rerio genomic clone DKEY-240P19, genomic survey sequence.    48   0.10   1
BX936442|BX936442.10 Zebrafish DNA sequence from clone DKEY-101D4 in linkage group 21.    48   0.10   1
EJ191090|EJ191090.1 1092344199081 Global-Ocean-Sampling_GS-27-01-01-1P8-2P0KB marine metagenome genomic clone 1061001446167 3', genomic survey sequence.    42   0.27   2
EI000476|EI000476.1 MUGQ_CH252P170B24Sp6_CN219_096 CHORI-252 Vervet Monkey Library Chlorocebus aethiops genomic clone CH252-170B24, genomic survey sequence.    46   0.40   1
CB820576|CB820576.1 EST 1568 Green Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone ba006n01 3', mRNA sequence.    40   1.1    2
AC123276|AC123276.3 Rattus norvegicus clone CH230-342L10, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   1.6    1
AL136452|AL136452.7 Human DNA sequence from clone RP1-186E20 on chromosome 10 Contains  STSs and GSSs.    44   1.6    1
AC189700|AC189700.3 Pan troglodytes BAC clone CH251-320D13 from chromosome 7, complete sequence.    34   3.0    2
AC093665|AC093665.1 Homo sapiens chromosome UNK clone RP11-481L11, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.    34   3.0    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000494_4531(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl...    41   0.015
CP000393_3865(CP000393|pid:none) Trichodesmium erythraeum IMS101...    40   0.019
CP000283_1918(CP000283|pid:none) Rhodopseudomonas palustris BisB...    37   0.21
BT040068_1(BT040068|pid:none) Zea mays full-length cDNA clone ZM...    35   0.62
BA000040_3379(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    35   0.81
BT087582_1(BT087582|pid:none) Zea mays full-length cDNA clone ZM...    35   0.81
CU234118_4532(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...    35   0.81
EU962608_1(EU962608|pid:none) Zea mays clone 244179 CAPIP1 mRNA,...    35   0.81
BT053292_1(BT053292|pid:none) Medicago truncatula clone MTYFP_FQ...    33   4.0
AC136226_8(AC136226|pid:none) Oryza sativa (japonica cultivar-gr...    33   4.0

 psg: 0.69  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for VHA606 is mit

>VHA606Z.Seq
NNNNNNNNNNAAATAATAACACAATGTCAACAAGAGTACAAAAATCTGCAATTTTAAATG
AAAACATAGCCAAAGTATGGAATGTTTTACGTAATTTCGATTTCCCATCAAGAATCTTCC
CAGTAATNGAAAGTTCAATTATTGAAGGTGACTCAACACCAACCNCTGTTGGAGCCATCC
GTGTTATAAAGTGGAAAACTGGTGAAACCAATAAACAAAGATTATTAGAACT