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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA602
Library VH
(Link to library)
Clone ID VHA602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12327-1
Original site URL
Representative seq. ID VHA602P
(Link to Original site)
Representative DNA sequence 
>VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/
TTAATTGATGTTGTCGATGGTCAATTTAGAGAAGGTTATTTAGTTGGTCCATCAAGAATT
GTTTCATACAATGAATCAAATGTAAAATCTTTATTCTTTGATACAAACATTGATACTAAA
CATAATCAACTTCAAGTTAAATTTAAGAATCATAGCCCTTCAACTAGAGTTCACGTTTTT
TCAAGTTACTTTGAACCAACAAATTCTTTAAATTCAAGTTTATCTTTATCACGTGGTACT
TCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATACTTCAATGGTAGATCA
TTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCTGGT
AATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACAAAC
TCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAAAAA
TCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCATTT
TTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACTGAT
GGTATAGTAAATATTGATCTCTCTCAATTAGXXXXXXXXXXGTAAATTCCCACATTTCCC
TGCTCACGTTTCAGAGAAACAAAAATATTATTGCCAATGTTACACCATTCACCTTTAGTG
TAGTTTTAAAACCATCTATTGTCAATCATTTATCATGGGAATACATTGCAAATCAAGGTA
CATTGGAATCAATCTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATC
ATCTCTATCATAGATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGA
AATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTT
ACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCAC
CATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCAT
TGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTAT
CAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTG
AATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAA
TTATGAAGAGAATTGGTAAACATCCAGTCTCAATTCCAAAATTAATTTCTTCTTCAACCA
CTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTAT
CAACCACTACTGATAGTTCAAAAGATAAAAAGAGACTNAAAAAGAAGAAAAACAAAGNGA
AAAAGAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
LIDVVDGQFREGYLVGPSRIVSYNESNVKSLFFDTNIDTKHNQLQVKFKNHSPSTRVHVF
SSYFEPTNSLNSSLSLSRGTSQSYQEYSVKPKSLYFNGRSLGDEVNYILNRKTSKKLLPG
NSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNESEVKDEKSMRNRQVEKRRVSSTNRSPF
LEFLSHPSILLLNLEPSSTDGIVNIDLSQL---

---VNSHISLLTFQRNKNIIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSK
NNLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIH
SLSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLL
SLKLNPSDTELLSLAYYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSV
ISSSSSSNLSTTTDSSKDKKRLKKKKNKXKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
LIDVVDGQFREGYLVGPSRIVSYNESNVKSLFFDTNIDTKHNQLQVKFKNHSPSTRVHVF
SSYFEPTNSLNSSLSLSRGTSQSYQEYSVKPKSLYFNGRSLGDEVNYILNRKTSKKLLPG
NSLKKPSLLVQPWSIGKTTNSTNTLKQASKYNESEVKDEKSMRNRQVEKRRVSSTNRSPF
LEFLSHPSILLLNLEPSSTDGIVNIDLSQL---

---VNSHISLLTFQRNKNIIANVTPFTFSVVLKPSIVNHLSWEYIANQGTLESILEYLSK
NNLYRVDFYHLYHRYTDKKVWDKVIELLKKLKFYESITWSFSIHHKNFVYLKDYLSEQIH
SLSMKSIDAPSIYVDPFENNFIKFLEYSPLVNSRTHQIGDERKILNNKLSNQYYEFCSLL
SLKLNPSDTELLSLAYYLLLQDRFDESIKIMKRIGKHPVSIPKLISSSTTTDSKSTHSSV
ISSSSSSNLSTTTDSSKDKKRLKKKKNKXKKK

Frame B:
*lmlsmvnlekvi*lvhqelfhtmnqm*nlysliqtlilniinfklnlriialqleftff
qvtlnqqil*iqvylyhvvllnliknialnqnhytsmvdh*vmklitf*ieklvknyylv
ih*rnqvywfnhgqlvklqtlqthsnkqvntmnlk*rmknq*eidklkreeflqqivhhf
*sffhihqfyf*ilnhhqlmv**ilisln*---

---*iptfpcsrfretkillpmlhhsplv*f*nhllsiiyhgntlqikvhwnqswniyqr
ticivlisiisiidipirkfgik*lns*rn*nsmnlslghslfiirisft*kitslnkfi
pyq*nqsmhhpfmlihlkitssnswntlhwliqeliklvmkerfliinyqinimnsvvyf
h*n*ihpilnyfl*liiyyfkidlmnqlkl*relvniqsqfqn*fllqplliqnqlihq*
flllplqiyqpllivqkikrdxkrrktkxkrk

Frame C:
n*ccrwsi*rrlfswsikncfiq*ikckifil*ykh*y*t*stss*i*es*pfn*ssrff
kll*tnkffkfkfifitwyfsilsri*r*tkiiilqw*iir**s*lhfk*kn**ktitw*
fiketksigstmvnw*nyklykhtqtsk*iq*i*skg*kinek*ts*keksffnksftif
rvsftsinftfks*tiin*wysky*slsi---

---kfphfpahvsekqkyycqcytihl*csfktiycqsfimgihcksryiginlgifike
qfvsc*flssls*iyr*eslg*sn*tlkeieil*iyhlvilyss*efrllerlpl*tnsf
lineinrctihlc*si*k*lhqilgilsig*fknssnw**kkds***iiksil*il*ftf
ieiksiry*itffsllfitsr*i**in*nyeenw*tsslnskinfffnhy*fkinsfisn
fffflfkfinhy**fkr*ketxkeekqxeke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA602 (VHA602Q) /CSM/VH/VHA6-A/VHA602Q.Seq.d/                       2714   0.0
VHC649 (VHC649Q) /CSM/VH/VHC6-C/VHC649Q.Seq.d/                       1477   0.0
VHB392 (VHB392Q) /CSM/VH/VHB3-D/VHB392Q.Seq.d/                       1463   0.0
VHI335 (VHI335Q) /CSM/VH/VHI3-B/VHI335Q.Seq.d/                       1453   0.0
CHG769 (CHG769Q) /CSM/CH/CHG7-C/CHG769Q.Seq.d/                       1447   0.0
VHP670 (VHP670Q) /CSM/VH/VHP6-C/VHP670Q.Seq.d/                       1409   0.0
VHP284 (VHP284Q) /CSM/VH/VHP2-D/VHP284Q.Seq.d/                       1294   0.0
VHC626 (VHC626Q) /CSM/VH/VHC6-B/VHC626Q.Seq.d/                       1294   0.0
VHN485 (VHN485Q) /CSM/VH/VHN4-D/VHN485Q.Seq.d/                       1291   0.0
VHH672 (VHH672Q) /CSM/VH/VHH6-C/VHH672Q.Seq.d/                       1289   0.0
own update 2004.12.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG226304|BG226304.1 kq20a02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5', mRNAsequence.    44   0.010  2
EH781554|EH781554.1 CNSS20392.b1_O09.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS20392, mRNA sequence.    52   0.044  1
EH775748|EH775748.1 CNSM8036.b1_H18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM8036, mRNA sequence.    52   0.044  1
DW014230|DW014230.1 w7l15_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w7l15_M13F, mRNA sequence.    52   0.044  1
DW013855|DW013855.1 w6j1_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6j1_M13F, mRNA sequence.    52   0.044  1
DW013658|DW013658.1 w6a21_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w6a21_M13F, mRNA sequence.    52   0.044  1
DW012158|DW012158.1 w16b5_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w16b5_M13F, mRNA sequence.    52   0.044  1
DW011114|DW011114.1 w12m22_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w12m22_M13F, mRNA sequence.    52   0.044  1
DW010876|DW010876.1 w12a11_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w12a11_M13F, mRNA sequence.    52   0.044  1
DW010820|DW010820.1 w11n16_M13F Myzus persicae, tobacco lineage, whole aphid library Myzus persicae cDNA clone w11n16_M13F, mRNA sequence.    52   0.044  1
dna update 2007. 3.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1285(CP000685|pid:none) Flavobacterium johnsoniae UW101...    40   0.28
AL133320_3(AL133320|pid:none) Human DNA sequence from clone RP4-...    39   0.47
AL844507_40(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.1
EU275726_23(EU275726|pid:none) Polysphondylium pallidum strain P...    37   2.3
CP000551_1069(CP000551|pid:none) Prochlorococcus marinus str. AS...    37   2.3
AY700145_5(AY700145|pid:none) Polysphondylium pallidum mitochond...    37   2.3
AL844506_148(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.3
AL935258_170(AL935258|pid:none) Lactobacillus plantarum strain W...    36   3.1
AL844507_89(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.1
BC090886_1(BC090886|pid:none) Homo sapiens chromosome 1 open rea...    36   3.1
protein update 2009. 6.26
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for VHA602 is nuc
5' end seq. ID VHA602F
5' end seq. 
>VHA602F.Seq
TTAATTGATGTTGTCGATGGTCAATTTAGAGAAGGTTATTTAGTTGGTCCATCAAGAATT
GTTTCATACAATGAATCAAATGTAAAATCTTTATTCTTTGATACAAACATTGATACTAAA
CATAATCAACTTCAAGTTAAATTTAAGAATCATAGCCCTTCAACTAGAGTTCACGTTTTT
TCAAGTTACTTTGAACCAACAAATTCTTTAAATTCAAGTTTATCTTTATCACGTGGTACT
TCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATACTTCAATGGTAGATCA
TTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCTGGT
AATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACAAAC
TCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAAAAA
TCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCATTT
TTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACTGAT
GGTATAGTAAATATTGATCTCTCTCAATTAGNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID VHA602Z
3' end seq. 
>VHA602Z.Seq
NNNNNNNNNNGTAAATTCCCACATTTCCCTGCTCACGTTTCAGAGAAACAAAAATATTAT
TGCCAATGTTACACCATTCACCTTTAGTGTAGTTTTAAAACCATCTATTGTCAATCATTT
ATCATGGGAATACATTGCAAATCAAGGTACATTGGAATCAATCTTGGAATATTTATCAAA
GAACAATTTGTATCGTGTTGATTTCTATCATCTCTATCATAGATATACCGATAAGAAAGT
TTGGGATAAAGTAATTGAACTCTTAAAGAAATTGAAATTCTATGAATCTATCACTTGGTC
ATTCTCTATTCATCATAAGAATTTCGTTTACTTGAAAGATTACCTCTCTGAACAAATTCA
TTCCTTATCAATGAAATCAATCGATGCACCATCCATTTATGTTGATCCATTTGAAAATAA
CTTCATCAAATTCTTGGAATACTCTCCATTGGTTAATTCAAGAACTCATCAAATTGGTGA
TGAAAGAAAGATTCTTAATAATAAATTATCAAATCAATATTATGAATTCTGTAGTTTACT
TTCATTGAAATTAAATCCATCCGATACTGAATTACTTTCTTTAGCTTATTATTTATTACT
TCAAGATAGATTTGATGAATCAATTAAAATTATGAAGAGAATTGGTAAACATCCAGTCTC
AATTCCAAAATTAATTTCTTCTTCAACCACTACTGATTCAAAATCAACTCATTCATCAGT
AATTTCTTCTTCTTCCTCTTCAAATTTATCAACCACTACTGATAGTTCAAAAGATAAAAA
GAGACTNAAAAAGAAGAAAAACAAAGNGAAAAAGAAAG
Length of 3' end seq. 818
Connected seq. ID VHA602P
Connected seq. 
>VHA602P.Seq
TTAATTGATGTTGTCGATGGTCAATTTAGAGAAGGTTATTTAGTTGGTCCATCAAGAATT
GTTTCATACAATGAATCAAATGTAAAATCTTTATTCTTTGATACAAACATTGATACTAAA
CATAATCAACTTCAAGTTAAATTTAAGAATCATAGCCCTTCAACTAGAGTTCACGTTTTT
TCAAGTTACTTTGAACCAACAAATTCTTTAAATTCAAGTTTATCTTTATCACGTGGTACT
TCTCAATCTTATCAAGAATATAGCGTTAAACCAAAATCATTATACTTCAATGGTAGATCA
TTAGGTGATGAAGTTAATTACATTTTAAATAGAAAAACTAGTAAAAAACTATTACCTGGT
AATTCATTAAAGAAACCAAGTCTATTGGTTCAACCATGGTCAATTGGTAAAACTACAAAC
TCTACAAACACACTCAAACAAGCAAGTAAATACAATGAATCTGAAGTAAAGGATGAAAAA
TCAATGAGAAATAGACAAGTTGAAAAGAGAAGAGTTTCTTCAACAAATCGTTCACCATTT
TTAGAGTTTCTTTCACATCCATCAATTTTACTTTTAAATCTTGAACCATCATCAACTGAT
GGTATAGTAAATATTGATCTCTCTCAATTAG----------GTAAATTCCCACATTTCCC
TGCTCACGTTTCAGAGAAACAAAAATATTATTGCCAATGTTACACCATTCACCTTTAGTG
TAGTTTTAAAACCATCTATTGTCAATCATTTATCATGGGAATACATTGCAAATCAAGGTA
CATTGGAATCAATCTTGGAATATTTATCAAAGAACAATTTGTATCGTGTTGATTTCTATC
ATCTCTATCATAGATATACCGATAAGAAAGTTTGGGATAAAGTAATTGAACTCTTAAAGA
AATTGAAATTCTATGAATCTATCACTTGGTCATTCTCTATTCATCATAAGAATTTCGTTT
ACTTGAAAGATTACCTCTCTGAACAAATTCATTCCTTATCAATGAAATCAATCGATGCAC
CATCCATTTATGTTGATCCATTTGAAAATAACTTCATCAAATTCTTGGAATACTCTCCAT
TGGTTAATTCAAGAACTCATCAAATTGGTGATGAAAGAAAGATTCTTAATAATAAATTAT
CAAATCAATATTATGAATTCTGTAGTTTACTTTCATTGAAATTAAATCCATCCGATACTG
AATTACTTTCTTTAGCTTATTATTTATTACTTCAAGATAGATTTGATGAATCAATTAAAA
TTATGAAGAGAATTGGTAAACATCCAGTCTCAATTCCAAAATTAATTTCTTCTTCAACCA
CTACTGATTCAAAATCAACTCATTCATCAGTAATTTCTTCTTCTTCCTCTTCAAATTTAT
CAACCACTACTGATAGTTCAAAAGATAAAAAGAGACTNAAAAAGAAGAAAAACAAAGNGA
AAAAGAAAG
Length of connected seq. 1439
Full length Seq ID -
Full length Seq. -
Length of full length seq. -