>VHA596 (VHA596Q) /CSM/VH/VHA5-D/VHA596Q.Seq.d/
AGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGT
ATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATAC
ATATAAATATTAAATAATTAAATATTAAAAAATGTCATCNATTGGTATTGATTTAGGTAC
AACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCAAATGATCA
AGGTAATAGAACCACTCCATCTTATGTNGCATTTACTGATACAGAACGTTTAATTGGTGA
TGCTGCAAANAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCTAAATGTTT
AATTGGNCGTAAATTTATTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAA
AGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAA
AGTTTTCTCAXXXXXXXXXX

vqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGT
TYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAXNQVAMNPTNTVFDAKCL
IGRKFIDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVF---

Frame A:
ssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvixwy*fry
nifmcwclak*sc*nyck*sr**nhsilcxiy*yrtfnw*cckxsscnesnqysi*c*mf
nwx*iy*qrssk*yetlaiqsyskgw**atyss*iqr*n*sfl---


Frame B:
vqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGIDLGT
TYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAXNQVAMNPTNTVFDAKCL
IGRKFIDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVF---


Frame C:
fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchxlvli*vq
hihvlvfgkmivlkllqmikvieplhlmxhlliqnv*lvmlqxiklq*iqpiqylmlnv*
lxvnlltkkfkvi*nighsklfqrmvishifklnskvklkfs---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHA596 (VHA596Q) /CSM/VH/VHA5-D/VHA596Q.Seq.d/                        739   0.0
CHJ844 (CHJ844Q) /CSM/CH/CHJ8-B/CHJ844Q.Seq.d/                        724   0.0
CHJ874 (CHJ874Q) /CSM/CH/CHJ8-D/CHJ874Q.Seq.d/                        724   0.0
VHO443 (VHO443Q) /CSM/VH/VHO4-B/VHO443Q.Seq.d/                        724   0.0
VHN833 (VHN833Q) /CSM/VH/VHN8-B/VHN833Q.Seq.d/                        724   0.0
VHN678 (VHN678Q) /CSM/VH/VHN6-D/VHN678Q.Seq.d/                        724   0.0
VHM490 (VHM490Q) /CSM/VH/VHM4-D/VHM490Q.Seq.d/                        724   0.0
VHM349 (VHM349Q) /CSM/VH/VHM3-C/VHM349Q.Seq.d/                        724   0.0
VHL875 (VHL875Q) /CSM/VH/VHL8-D/VHL875Q.Seq.d/                        724   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   684   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   454   e-123  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   145   3e-76  3
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   145   4e-76  3
EH431862|EH431862.1 NPE00000311 Neocallimastix patriciarum ZAP II cDNA library Neocallimastix patriciarum cDNA, mRNA sequence.   210   7e-71  3
CF672516|CF672516.1 RTCNT1_64_D07.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_64_D07_A029 3', mRNA sequence.   182   7e-51  2
DT732367|DT732367.1 EST1166217 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1TD26, mRNA sequence.   200   3e-47  1
DR932354|DR932354.1 EST1123893 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1OG46, mRNA sequence.   200   3e-47  1
CI768768|CI768768.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0054L03T3, 5'end of J100054L03.   129   4e-46  3
CI777319|CI777319.1 Oryza sativa (japonica cultivar-group) cDNA, clone: J10B0085M15T3, 5'end of J100085M15.   129   4e-46  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   226   2e-58
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   226   2e-58
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   206   2e-52
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   206   2e-52
AY495382_1(AY495382|pid:none) Trypanosoma rangeli isolate Tre he...   198   7e-50
M26595_1(M26595|pid:none) T.cruzi heat shock protein (HSP70) gen...   197   9e-50
A25398(A25398)dnaK-type molecular chaperone - Trypanosoma brucei      196   3e-49
FJ222459_1(FJ222459|pid:none) Trypanosoma cruzi heat shock prote...   196   3e-49
(P11145) RecName: Full=Heat shock 70 kDa protein 4; AltName: Ful...   196   3e-49
FJ168549_2(FJ168549|pid:none) Bodo saltans clone fosmid 16K02, c...   196   3e-49

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VHA596 is cyt

>VHA596F.Seq
AGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAATTTTTTTGT
ATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCACACACATAC
ATATAAATATTAAATAATTAAATATTAAAAAATGTCATCNATTGGTATTGATTTAGGTAC
AACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCAAATGATCA
AGGTAATAGAACCACTCCATCTTATGTNGCATTTACTGATACAGAACGTTTAATTGGTGA
TGCTGCAAANAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCTAAATGTTT
AATTGGNCGTAAATTTATTGACAAAGAAGTTCAAAGTGATATGAAACATTGGCCATTCAA
AGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGTGAAACTAA
AGTTTTCTCANNNNNNNNNN