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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VHA593
Library VH
(Link to library)
Clone ID VHA593
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16538-1
Original site URL
Representative seq. ID VHA593P
(Link to Original site)
Representative DNA sequence 
>VHA593 (VHA593Q) /CSM/VH/VHA5-D/VHA593Q.Seq.d/
AGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAAT
CATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATTGGTGATTTAATCCAAG
GTGCTAAATAAATTTATTATTATTATAATAATATTATATCTAAAAAAAAAAXXXXXXXXX
XAGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCTGATGGAAAT
CATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATGGGATTAATCCAAGGTG
CTAAATAAATT
sequence update 2002.10.25
Translated Amino Acid sequence 
skskktislltsklpslignhqttmvqvlpsvqslvi*SKVLNKFIIIIIILYLKKK---

---SKSKKTISLLTSKLPSLMEIIKLQWFRCCRRFNHGINPRC*in
Translated Amino Acid sequence (All Frames) 
Frame A:
skskktislltsklpslignhqttmvqvlpsvqslvi*SKVLNKFIIIIIILYLKKK---

---SKSKKTISLLTSKLPSLMEIIKLQWFRCCRRFNHGINPRC*in

Frame B:
anpkkrslc*lqnchr*leiiklqwfrccrrfnhw*fnprc*inllll**yyi*kk---

---anpkkrslc*lqnchr*wkssnyngsgvavgsimgliqgak*i

Frame C:
qiqkndlsadfktaiadwkssnyngsgvavgsiigdliqgak*iyyyynniiskkk---

---qiqkndlsadfktaiadgnhqttmvqvlpsvqswd*skvlnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG782 (VSG782Q) /CSM/VS/VSG7-D/VSG782Q.Seq.d/                        287   5e-77
VSG543 (VSG543Q) /CSM/VS/VSG5-B/VSG543Q.Seq.d/                        287   5e-77
VSF357 (VSF357Q) /CSM/VS/VSF3-C/VSF357Q.Seq.d/                        287   5e-77
VSF240 (VSF240Q) /CSM/VS/VSF2-B/VSF240Q.Seq.d/                        287   5e-77
VSE896 (VSE896Q) /CSM/VS/VSE8-D/VSE896Q.Seq.d/                        287   5e-77
VSE888 (VSE888Q) /CSM/VS/VSE8-D/VSE888Q.Seq.d/                        287   5e-77
VSC219 (VSC219Q) /CSM/VS/VSC2-A/VSC219Q.Seq.d/                        287   5e-77
VSB855 (VSB855Q) /CSM/VS/VSB8-C/VSB855Q.Seq.d/                        287   5e-77
VSB790 (VSB790Q) /CSM/VS/VSB7-D/VSB790Q.Seq.d/                        287   5e-77
VSB722 (VSB722Q) /CSM/VS/VSB7-A/VSB722Q.Seq.d/                        287   5e-77
own update 2002.12.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y17042|Y17042.1 Dictyostelium discoideum mRNA for P17 protein.    285   3e-73  1
EJ509890|EJ509890.1 1095407066805 Global-Ocean-Sampling_GS-28-01-01-1P6-2P0KB marine metagenome genomic clone 1061005572620 3', genomic survey sequence.    52   0.009  1
ED805676|ED805676.1 MG__Bb0092D06r MG__Bb Mimulus guttatus genomic, genomic survey sequence.    52   0.009  1
AG579058|AG579058.1 Mus musculus molossinus DNA, clone:MSMg01-504B13.TJ, genomic survey sequence.    52   0.009  1
CL141561|CL141561.1 ISB1-119B2_Sp6.1 ISB1 Xenopus tropicalis genomic clone ISB1-119B2, genomic survey sequence.    52   0.009  1
CE492750|CE492750.1 tigr-gss-dog-17000327149955 Dog Library Canis familiaris genomic, genomic survey sequence.    52   0.009  1
AM477006|AM477006.1 Vitis vinifera, whole genome shotgun sequence, contig  VV78X264505.18, clone ENTAV 115.    44   0.026  2
DX561113|DX561113.1 GH_MBb0089O14f GH_MBb Gossypium hirsutum genomic clone GH_MBb0089O14f, genomic survey sequence.    30   0.027  4
EL517803|EL517803.1 Lr_CA1Z_19A08_T7 Earthworm Lambda Zap Express Library Lumbricus rubellus cDNA clone Lr_CA1Z_19A08 3', mRNA sequence.    50   0.035  1
BQ474588|BQ474588.1 biphyllus2f10.g Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus2f10 3', mRNA sequence.    50   0.035  1
dna update 2007. 3.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O77257) RecName: Full=Protein gp17; Flags: Precursor;  &Y17042_...    79   5e-14
(Q54KD5) RecName: Full=P17/29C-like protein DDB_G0287399; Flags:...    39   0.057
(Q23911) RecName: Full=Protein 29C; Flags: Precursor;                  36   0.37
protein update 2009. 2.23
PSORT 

 psg: 1.01  gvh: 0.35  alm: 0.34  top: 0.73  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for VHA593 is mit
5' end seq. ID VHA593F
5' end seq. 
>VHA593F.Seq
AGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAAT
CATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATTGGTGATTTAATCCAAG
GTGCTAAATAAATTTATTATTATTATAATAATATTATATCTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 181
3' end seq. ID VHA593Z
3' end seq. 
>VHA593Z.Seq
NNNNNNNNNNAGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCT
GATGGAAATCATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATGGGATTAA
TCCAAGGTGCTAAATAAATT
Length of 3' end seq. 140
Connected seq. ID VHA593P
Connected seq. 
>VHA593P.Seq
AGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCTGATTGGAAAT
CATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATTGGTGATTTAATCCAAG
GTGCTAAATAAATTTATTATTATTATAATAATATTATATCTAAAAAAAAAA---------
-AGCAAATCCAAAAAAACGATCTCTCTGCTGACTTCAAAACTGCCATCGCTGATGGAAAT
CATCAAACTACAATGGTTCAGGTGTTGCCGTCGGTTCAATCATGGGATTAATCCAAGGTG
CTAAATAAATT
Length of connected seq. 301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -