VHA579
Library VH
(Link to library)
Clone ID VHA579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15819-1
Original site URL
Representative seq. ID VHA579P
(Link to Original site)
Representative DNA sequence
>VHA579 (VHA579Q) /CSM/VH/VHA5-D/VHA579Q.Seq.d/
AAATTTAGATATGAATTACCACCACATGCATATGCAGTAGCAGATGATATGTATAGAAGT
ATGTATGCTGAAGGTCAATCACAATGTGTTATCATTTCTGGTGAATCAGGTGCAGGTAAA
ACTGAAGCAGCAAAATTAATTATGCAATATATTGCAGCAGTCTCTGGTAAGGGTGCCGAT
GTATCAAGAGTAAAAGATGTAATCTTGGAATCAAATCCATTGTTGGAAGCATTTGGTAAT
GCAAAAACTTTACGTAATAATAATTCATCACGTTTTGGTAAATATATGGAAGTTCAATTC
AATGGTATCGGTGATCCAGAAGGTGGTAGAGTTACCAATTATCTCTTAGAAAAATCACGT
GTTGTCTATCAAACTAAAGGTGAAAGAAATTTTCATATCTTTTATCAATTATTATCTGGT
GCAAATCAACAATTAAAAAGTGAATTAAGATTAGATACACCAGATAAATTTAATTATTTA
TCAGCAAGTGGTTGTTATACTGTTGATGGAGTTGATGATTCAGGTGAATTTCAAGATGTT
TGTAAAGCAATGAAAGTTATTGGATTGACTGATAGTGAACAAAAXXXXXXXXXXGTTCCA
AATTTAACACCNCCAGAATCATTACCAGTNGTTTCAATTNCAATTTATAAACCAGCAATN
AATGCAAANAATGCCCCTNAAAANAATGGTGGCCCTGNTTNAAATGTAAAACCATCCGGT
AAAGCNCTTTACGATTTNGATGGTGAATCCTCAATGGAATTNTTTTTNAAANAGGGTGAT
ATTTTCNCTGTTTTANATCAAANCTTTGGTGATTGGTGGGATGCCGAGTTAAAAGGTNGT
NGTGGTAAAGTTCCTTCAAATTATTTACAATTNATAAANAATGNTGCCCCNCCAAAAGNT
GGTGGTCCNCCAGTTCCAANTGGTAATNGTGCTCCAANTACAANTACAACTTTTGGTGGN
TCAANTNGTGGTGGTTTCAATAATGGCCCATCAACTGNTCCATCAGGTNGTGGTGNTGNT
CCTCCATCATNTNGTGGTGGTATGGCTCCAAAAGGTGGCTCGGTAGCTCCTCCATCATNT
NGTGGTGGTATTGCTCCAAAAGGTGGTATTGCTCCAAAAGGTGGTATGGCNCCAAAAGGT
GGAAAGGCNCCAANAGTTTAAANAATTTTGTTCNCGACATCTTTTTTTTTTTTTAAAAAA
ATAAAAAACAAATTAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
KFRYELPPHAYAVADDMYRSMYAEGQSQCVIISGESGAGKTEAAKLIMQYIAAVSGKGAD
VSRVKDVILESNPLLEAFGNAKTLRNNNSSRFGKYMEVQFNGIGDPEGGRVTNYLLEKSR
VVYQTKGERNFHIFYQLLSGANQQLKSELRLDTPDKFNYLSASGCYTVDGVDDSGEFQDV
CKAMKVIGLTDSEQ---

---VPNLTPPESLPVVSIXIYKPAXNAXNAPXXNGGPXXNVKPSGKALYDXDGESSMEXF
XKXGDIFXVLXQXFGDWWDAELKGXXGKVPSNYLQXIXNXAPPKXGGPPVPXGNXAPXTX
TTFGGSXXGGFNNGPSTXPSGXGXXPPSXXGGMAPKGGSVAPPSXXGGIAPKGGIAPKGG
MAPKGGKAPXV*xilfxtsffffkkiknklk


Translated Amino Acid sequence (All Frames)
Frame A:
KFRYELPPHAYAVADDMYRSMYAEGQSQCVIISGESGAGKTEAAKLIMQYIAAVSGKGAD
VSRVKDVILESNPLLEAFGNAKTLRNNNSSRFGKYMEVQFNGIGDPEGGRVTNYLLEKSR
VVYQTKGERNFHIFYQLLSGANQQLKSELRLDTPDKFNYLSASGCYTVDGVDDSGEFQDV
CKAMKVIGLTDSEQ---

---VPNLTPPESLPVVSIXIYKPAXNAXNAPXXNGGPXXNVKPSGKALYDXDGESSMEXF
XKXGDIFXVLXQXFGDWWDAELKGXXGKVPSNYLQXIXNXAPPKXGGPPVPXGNXAPXTX
TTFGGSXXGGFNNGPSTXPSGXGXXPPSXXGGMAPKGGSVAPPSXXGGIAPKGGIAPKGG
MAPKGGKAPXV*xilfxtsffffkkiknklk

Frame B:
nldmnyhhmhmq*qmicievcmlkvnhnvlsflvnqvqvklkqqn*lcnilqqslvrvpm
yqe*km*swnqihcwkhlvmqklyviiihhvlvniwkfnsmvsviqkvvelpiis*knhv
lsiklkvkeifisfinyylvqinn*kvn*d*ihqinliiyqqvvvillmelmiqvnfkmf
vkq*klld*livnk---

---fqi*hxqnhyqxfqxqfinqqxmqxmplkxmvalxxm*nhpvkxftixmvnpqwnxf
xxrvifslfxikxlviggmps*kvvvvkflqiiynx*xmxpxqkxvvxqfqxvxvlqxqx
qllvxqxvvvsimahqlxhqvvvxxlhhxvvvwlqkvar*llhhxvvvllqkvvllqkvv
wxqkverxqxfkxfcsrhlffflkk*ktn*k

Frame C:
i*i*itttcicssr*yv*kyvc*rsitmcyhfw*ircr*n*sskinyaiycsslw*gcrc
ikskrcnlgiksivgsiw*cknft***fitfw*iygssiqwyr*srrw*syqlslrkitc
clsn*r*kkfsyllsiiiwckstikk*ikirytr*i*lfiskwllyc*ws**fr*isrcl
*snesywid***tk---

---skfntxriitsxfnxnl*tsnxckxcpxkxwwpxxkcktir*sxlrfxw*ilngixf
xxg*yfxcfxsxlw*lvgcrvkrxxw*ssfklftixkxxcpxkxwwsxssxw*xcsxyxy
nfwwxxxwwfq*wpinxsirxwxxssixxwwygskrwlgsssixxwwycskrwycskrwy
gxkrwkgxxslxnfvxdiffff*knkkqik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA579 (VHA579Q) /CSM/VH/VHA5-D/VHA579Q.Seq.d/ 2014 0.0
VHD144 (VHD144Q) /CSM/VH/VHD1-B/VHD144Q.Seq.d/ 1152 0.0
VHM193 (VHM193Q) /CSM/VH/VHM1-D/VHM193Q.Seq.d/ 1057 0.0
VHI239 (VHI239Q) /CSM/VH/VHI2-B/VHI239Q.Seq.d/ 928 0.0
CHP376 (CHP376Q) /CSM/CH/CHP3-D/CHP376Q.Seq.d/ 888 0.0
AHB642 (AHB642Q) /CSM/AH/AHB6-B/AHB642Q.Seq.d/ 817 0.0
VHA480 (VHA480Q) /CSM/VH/VHA4-D/VHA480Q.Seq.d/ 771 0.0
SSK875 (SSK875Q) /CSM/SS/SSK8-D/SSK875Q.Seq.d/ 706 0.0
VHD717 (VHD717Q) /CSM/VH/VHD7-A/VHD717Q.Seq.d/ 632 e-180
AHR329 (AHR329Q) /CSM/AH/AHR3-B/AHR329Q.Seq.d/ 581 e-164

own update 2004.12.24
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 874 0.0 4
L16509|L16509.1 Dictyostelium discoideum mRNA sequence. 866 0.0 4
L06805|L06805.1 Dictyostelium discoideum DMIE gene, complete cds. 119 1e-49 4
L35323|L35323.1 Dictyostelium discoideum myosin IC (myoC) gene, complete cds. 107 4e-46 3
M26037|M26037.1 D.discoideum myosin I heavy chain gene, complete cds. 121 2e-45 4
S73909|S73909.1 abmA=actin-based motor [Dictyostelium, Genomic, 3402 nt]. 100 4e-42 3
EC824684|EC824684.1 SME00003614 esmbsro2 Sawyeria marylandensis cDNA, mRNA sequence. 56 5e-30 5
AF090534|AF090534.1 Dictyostelium discoideum unconventional myosin heavy chain MyoK (myoK) mRNA, complete cds. 68 7e-24 5
AB017909|AB017909.1 Dictyostelium discoideum myoK gene, complete cds. 68 1e-23 5
L35322|L35322.1 Dictyostelium discoideum myosin (myoJ) gene, partial cds. 62 7e-22 4
dna update 2007. 3.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A47106(A47106;B47106)myosin heavy chain ID - slime mold (Dictyos... 389 e-107
AF051353_1(AF051353|pid:none) Acanthamoeba castellanii myosin IC... 291 4e-77
(P10569) RecName: Full=Myosin IC heavy chain; &J02974_1(J02974|... 265 2e-69
(P22467) RecName: Full=Myosin IA heavy chain; AltName: Full=Myos... 261 3e-68
AF248488_1(AF248488|pid:none) Strongylocentrotus purpuratus amoe... 258 2e-67
A33284(A33284) myosin heavy chain IB - slime mold (Dictyostelium... 252 2e-65
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos... 251 3e-65
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel... 249 2e-64
(Q12965) RecName: Full=Myosin-Ie; AltName: Full=Myosin-Ic; &AB2... 244 3e-63
AY893005_1(AY893005|pid:none) Synthetic construct Homo sapiens c... 244 4e-63
protein update 2009. 6.26
PSORT

psg: 0.80 gvh: 0.46 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for VHA579 is nuc

5' end seq. ID VHA579F
5' end seq.
>VHA579F.Seq
AAATTTAGATATGAATTACCACCACATGCATATGCAGTAGCAGATGATATGTATAGAAGT
ATGTATGCTGAAGGTCAATCACAATGTGTTATCATTTCTGGTGAATCAGGTGCAGGTAAA
ACTGAAGCAGCAAAATTAATTATGCAATATATTGCAGCAGTCTCTGGTAAGGGTGCCGAT
GTATCAAGAGTAAAAGATGTAATCTTGGAATCAAATCCATTGTTGGAAGCATTTGGTAAT
GCAAAAACTTTACGTAATAATAATTCATCACGTTTTGGTAAATATATGGAAGTTCAATTC
AATGGTATCGGTGATCCAGAAGGTGGTAGAGTTACCAATTATCTCTTAGAAAAATCACGT
GTTGTCTATCAAACTAAAGGTGAAAGAAATTTTCATATCTTTTATCAATTATTATCTGGT
GCAAATCAACAATTAAAAAGTGAATTAAGATTAGATACACCAGATAAATTTAATTATTTA
TCAGCAAGTGGTTGTTATACTGTTGATGGAGTTGATGATTCAGGTGAATTTCAAGATGTT
TGTAAAGCAATGAAAGTTATTGGATTGACTGATAGTGAACAAAANNNNNNNNNN
Length of 5' end seq. 594
3' end seq. ID VHA579Z
3' end seq.
>VHA579Z.Seq
NNNNNNNNNNGTTCCAAATTTAACACCNCCAGAATCATTACCAGTNGTTTCAATTNCAAT
TTATAAACCAGCAATNAATGCAAANAATGCCCCTNAAAANAATGGTGGCCCTGNTTNAAA
TGTAAAACCATCCGGTAAAGCNCTTTACGATTTNGATGGTGAATCCTCAATGGAATTNTT
TTTNAAANAGGGTGATATTTTCNCTGTTTTANATCAAANCTTTGGTGATTGGTGGGATGC
CGAGTTAAAAGGTNGTNGTGGTAAAGTTCCTTCAAATTATTTACAATTNATAAANAATGN
TGCCCCNCCAAAAGNTGGTGGTCCNCCAGTTCCAANTGGTAATNGTGCTCCAANTACAAN
TACAACTTTTGGTGGNTCAANTNGTGGTGGTTTCAATAATGGCCCATCAACTGNTCCATC
AGGTNGTGGTGNTGNTCCTCCATCATNTNGTGGTGGTATGGCTCCAAAAGGTGGCTCGGT
AGCTCCTCCATCATNTNGTGGTGGTATTGCTCCAAAAGGTGGTATTGCTCCAAAAGGTGG
TATGGCNCCAAAAGGTGGAAAGGCNCCAANAGTTTAAANAATTTTGTTCNCGACATCTTT
TTTTTTTTTTAAAAAAATAAAAAACAAATTAAAAA
Length of 3' end seq. 635
Connected seq. ID VHA579P
Connected seq.
>VHA579P.Seq
AAATTTAGATATGAATTACCACCACATGCATATGCAGTAGCAGATGATATGTATAGAAGT
ATGTATGCTGAAGGTCAATCACAATGTGTTATCATTTCTGGTGAATCAGGTGCAGGTAAA
ACTGAAGCAGCAAAATTAATTATGCAATATATTGCAGCAGTCTCTGGTAAGGGTGCCGAT
GTATCAAGAGTAAAAGATGTAATCTTGGAATCAAATCCATTGTTGGAAGCATTTGGTAAT
GCAAAAACTTTACGTAATAATAATTCATCACGTTTTGGTAAATATATGGAAGTTCAATTC
AATGGTATCGGTGATCCAGAAGGTGGTAGAGTTACCAATTATCTCTTAGAAAAATCACGT
GTTGTCTATCAAACTAAAGGTGAAAGAAATTTTCATATCTTTTATCAATTATTATCTGGT
GCAAATCAACAATTAAAAAGTGAATTAAGATTAGATACACCAGATAAATTTAATTATTTA
TCAGCAAGTGGTTGTTATACTGTTGATGGAGTTGATGATTCAGGTGAATTTCAAGATGTT
TGTAAAGCAATGAAAGTTATTGGATTGACTGATAGTGAACAAAA----------GTTCCA
AATTTAACACCNCCAGAATCATTACCAGTNGTTTCAATTNCAATTTATAAACCAGCAATN
AATGCAAANAATGCCCCTNAAAANAATGGTGGCCCTGNTTNAAATGTAAAACCATCCGGT
AAAGCNCTTTACGATTTNGATGGTGAATCCTCAATGGAATTNTTTTTNAAANAGGGTGAT
ATTTTCNCTGTTTTANATCAAANCTTTGGTGATTGGTGGGATGCCGAGTTAAAAGGTNGT
NGTGGTAAAGTTCCTTCAAATTATTTACAATTNATAAANAATGNTGCCCCNCCAAAAGNT
GGTGGTCCNCCAGTTCCAANTGGTAATNGTGCTCCAANTACAANTACAACTTTTGGTGGN
TCAANTNGTGGTGGTTTCAATAATGGCCCATCAACTGNTCCATCAGGTNGTGGTGNTGNT
CCTCCATCATNTNGTGGTGGTATGGCTCCAAAAGGTGGCTCGGTAGCTCCTCCATCATNT
NGTGGTGGTATTGCTCCAAAAGGTGGTATTGCTCCAAAAGGTGGTATGGCNCCAAAAGGT
GGAAAGGCNCCAANAGTTTAAANAATTTTGTTCNCGACATCTTTTTTTTTTTTTAAAAAA
ATAAAAAACAAATTAAAAA
Length of connected seq. 1209
Full length Seq ID -
Full length Seq. -
Length of full length seq. -