>VHA534 (VHA534Q) /CSM/VH/VHA5-B/VHA534Q.Seq.d/
ATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAA
GAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGA
TATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGA
TATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAA
AAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATT
GGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGC
ATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATAT
CCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATA
TAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGTTAAGAGAGAA
ATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTTGCGAAXXXXX
XXXXX

LKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQMLGFD
ISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEAYLA
LNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREK
LDDPEPSVVSCSVNVIC---

Frame A:
ienv*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpkiniysnvri*
y*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfliiesk*slfs
ielsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisriaktsipkvkre
ig*sraigcimlsqcdlr---


Frame B:
LKMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQMLGFD
ISWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEAYLA
LNCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREK
LDDPEPSVVSCSVNVIC---


Frame C:
*kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpskn*hifkc*dli
lvghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisyhrikvkpi*h
*ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr*dqhsqs*ern
wmipshrlyhaqsm*fa---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1138   0.0
VHA534 (VHA534Q) /CSM/VH/VHA5-B/VHA534Q.Seq.d/                       1138   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1138   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1138   0.0
SHA829 (SHA829Q) /CSM/SH/SHA8-B/SHA829Q.Seq.d/                       1138   0.0
CHE687 (CHE687Q) /CSM/CH/CHE6-D/CHE687Q.Seq.d/                       1138   0.0
AHO519 (AHO519Q) /CSM/AH/AHO5-A/AHO519Q.Seq.d/                       1138   0.0
AHO212 (AHO212Q) /CSM/AH/AHO2-A/AHO212Q.Seq.d/                       1138   0.0
AHI342 (AHI342Q) /CSM/AH/AHI3-B/AHI342Q.Seq.d/                       1138   0.0
AHA181 (AHA181Q) /CSM/AH/AHA1-D/AHA181Q.Seq.d/                       1138   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

DB731624|DB731624.1 Apis mellifera head cDNA, RIKEN full-length enriched library, clone:BH10011L17, 5' end partial sequence.    56   2e-06  2
EE263933|EE263933.1 D05_D05gf3f10_pDNRf_505335 Myzus persicae, line G006, whole female aphid library Myzus persicae cDNA clone D05_D05gf3f10_pDNRf_505335, mRNA sequence.    42   0.063  3
AM428870|AM428870.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X252291.4, clone ENTAV 115.    48   0.28   1
BW712045|BW712045.1 Branchiostoma floridae cDNA, adult clone:bfad010m18, 3' end.    38   0.46   2
AC023003|AC023003.2 Homo sapiens clone RP11-270M20, WORKING DRAFT SEQUENCE, 12 unordered pieces.    46   1.1    1
BH161697|BH161697.1 ENTTA13TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   1.1    1
AZ673430|AZ673430.1 ENTLH29TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   1.1    1
AB261057|AB261057.1 Entamoeba histolytica gene for gamma subunit isoform 2, complete cds.    46   1.1    1
AC019159|AC019159.8 Homo sapiens BAC clone RP11-56O18 from 2, complete sequence.    46   1.1    1
DT615079|ADD_DROME Probable delta-adaptin (Garnet protein) (Delta adaptin subunit of AP-3), mRNA sequence.    28   1.7    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   255   8e-67
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   255   8e-67
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   255   8e-67
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   255   8e-67
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   253   3e-66
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   253   4e-66
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   253   4e-66
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   253   4e-66
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   253   4e-66
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   251   1e-65

 psg: 0.52  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for VHA534 is nuc

>VHA534F.Seq
ATTGAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAA
GAATGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGA
TATGCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGA
TATTAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAA
AAGAATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATT
GGCAACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGC
ATTGAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATAT
CCTAACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATA
TAAGATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGTTAAGAGAGAA
ATTGGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTTGCGAANNNNN
NNNNN